RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 NUP98P52948 1817 aa6.71□□□□□ -1.33
HMGB1-207ENST00000468384 A0A1W2PQ45 241 aaPredicted RBP6.71□□□□□ -1.34
HMGB1-207ENST00000468384 A0A1W2PQY0 241 aa6.71□□□□□ -1.34
HMGB1-207ENST00000468384 TCP10L2B9ZVM9 353 aa6.71□□□□□ -1.34
HMGB1-207ENST00000468384 COL8A1P27658 744 aa6.71□□□□□ -1.34
HMGB1-207ENST00000468384 WDR4P57081 412 aaKnown RBP6.71□□□□□ -1.34
HMGB1-207ENST00000468384 RPS8P62241 208 aaKnown RBP6.71□□□□□ -1.34
HMGB1-207ENST00000468384 DOC2BQ14184 412 aa6.71□□□□□ -1.34
HMGB1-207ENST00000468384 RRP1BQ14684 758 aaKnown RBP6.71□□□□□ -1.34
HMGB1-207ENST00000468384 BRICD5Q6PL45 260 aa6.71□□□□□ -1.34
HMGB1-207ENST00000468384 RNF19BQ6ZMZ0 732 aa6.71□□□□□ -1.34
HMGB1-207ENST00000468384 TTLL7Q6ZT98 887 aa6.71□□□□□ -1.34
HMGB1-207ENST00000468384 ZBTB3Q9H5J0 574 aa6.71□□□□□ -1.34
HMGB1-207ENST00000468384 MTUS1Q9ULD2 1270 aa6.71□□□□□ -1.34
HMGB1-207ENST00000468384 CDC14CA4D256 554 aa6.7□□□□□ -1.34
HMGB1-207ENST00000468384 KIF28PB7ZC32 967 aa6.7□□□□□ -1.34
HMGB1-207ENST00000468384 KCNQ3O43525 872 aa6.7□□□□□ -1.34
HMGB1-207ENST00000468384 RAD21O60216 631 aa6.7□□□□□ -1.34
HMGB1-207ENST00000468384 ARP10275 920 aa6.7□□□□□ -1.34
HMGB1-207ENST00000468384 DLX2Q07687 328 aaPredicted RBP6.7□□□□□ -1.34
HMGB1-207ENST00000468384 NNTQ13423 1086 aa6.7□□□□□ -1.34
HMGB1-207ENST00000468384 CCDC6Q16204 474 aa6.7□□□□□ -1.34
HMGB1-207ENST00000468384 MSS51Q4VC12 460 aa6.7□□□□□ -1.34
HMGB1-207ENST00000468384 TIGD5Q53EQ6 642 aa6.7□□□□□ -1.34
HMGB1-207ENST00000468384 TCEAL5Q5H9L2 206 aa6.7□□□□□ -1.34
HMGB1-207ENST00000468384 LCE4AQ5TA78 99 aa6.7□□□□□ -1.34
HMGB1-207ENST00000468384 KIF6Q6ZMV9 814 aa6.7□□□□□ -1.34
HMGB1-207ENST00000468384 RPAINQ86UA6 219 aa6.7□□□□□ -1.34
HMGB1-207ENST00000468384 TDRD7Q8NHU6 1098 aaKnown RBP6.7□□□□□ -1.34
HMGB1-207ENST00000468384 MRPL38Q96DV4 380 aaKnown RBP6.7□□□□□ -1.34
HMGB1-207ENST00000468384 MFSD1Q9H3U5 465 aa6.7□□□□□ -1.34
HMGB1-207ENST00000468384 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.7□□□□□ -1.34
HMGB1-207ENST00000468384 POLKQ9UBT6 870 aa6.7□□□□□ -1.34
HMGB1-207ENST00000468384 COG6Q9Y2V7 657 aa6.7□□□□□ -1.34
HMGB1-207ENST00000468384 LRRK2Q5S007 2527 aa6.7□□□□□ -1.34
HMGB1-207ENST00000468384 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.69□□□□□ -1.34
HMGB1-207ENST00000468384 RCCD1A6NED2 376 aa6.69□□□□□ -1.34
HMGB1-207ENST00000468384 F8W031 263 aaPredicted RBP6.69□□□□□ -1.34
HMGB1-207ENST00000468384 PI15O43692 258 aa6.69□□□□□ -1.34
HMGB1-207ENST00000468384 CYBAP13498 195 aa6.69□□□□□ -1.34
HMGB1-207ENST00000468384 CYP2C19P33261 490 aa6.69□□□□□ -1.34
HMGB1-207ENST00000468384 TNNI2P48788 182 aa6.69□□□□□ -1.34
HMGB1-207ENST00000468384 CLK2P49760 499 aaKnown RBP6.69□□□□□ -1.34
HMGB1-207ENST00000468384 RBM5P52756 815 aaKnown RBP eCLIP6.69□□□□□ -1.34
HMGB1-207ENST00000468384 ZBTB33Q86T24 672 aa6.69□□□□□ -1.34
HMGB1-207ENST00000468384 HERC6Q8IVU3 1022 aa6.69□□□□□ -1.34
HMGB1-207ENST00000468384 CERS5Q8N5B7 392 aa6.69□□□□□ -1.34
HMGB1-207ENST00000468384 BANK1Q8NDB2 785 aa6.69□□□□□ -1.34
HMGB1-207ENST00000468384 NEDD1Q8NHV4 660 aa6.69□□□□□ -1.34
HMGB1-207ENST00000468384 SECISBP2LQ93073 1101 aaKnown RBP6.69□□□□□ -1.34
HMGB1-207ENST00000468384 ZNF341Q9BYN7 854 aa6.69□□□□□ -1.34
HMGB1-207ENST00000468384 COA1Q9GZY4 146 aa6.69□□□□□ -1.34
HMGB1-207ENST00000468384 TDRD3Q9H7E2 651 aaKnown RBP6.69□□□□□ -1.34
HMGB1-207ENST00000468384 PARD6AQ9NPB6 346 aa6.69□□□□□ -1.34
HMGB1-207ENST00000468384 AGTPBP1Q9UPW5 1226 aa6.69□□□□□ -1.34
HMGB1-207ENST00000468384 RFX7Q2KHR2 1363 aa6.69□□□□□ -1.34
HMGB1-207ENST00000468384 NBPF19A0A087WUL8 3843 aa6.68□□□□□ -1.34
HMGB1-207ENST00000468384 SNRPA1P09661 255 aaKnown RBP6.68□□□□□ -1.34
HMGB1-207ENST00000468384 NCLP19338 710 aaKnown RBP6.68□□□□□ -1.34
HMGB1-207ENST00000468384 ERVK-21P61565 698 aa6.68□□□□□ -1.34
HMGB1-207ENST00000468384 TEFQ10587 303 aa6.68□□□□□ -1.34
HMGB1-207ENST00000468384 TTLL4Q14679 1199 aa6.68□□□□□ -1.34
HMGB1-207ENST00000468384 DCAF15Q66K64 600 aa6.68□□□□□ -1.34
HMGB1-207ENST00000468384 CWF19L1Q69YN2 538 aaKnown RBP6.68□□□□□ -1.34
HMGB1-207ENST00000468384 SULT6B1Q6IMI4 303 aa6.68□□□□□ -1.34
HMGB1-207ENST00000468384 CCDC155Q8N6L0 562 aa6.68□□□□□ -1.34
HMGB1-207ENST00000468384 PHOSPHO2Q8TCD6 241 aa6.68□□□□□ -1.34
HMGB1-207ENST00000468384 RIN2Q8WYP3 895 aaPredicted RBP6.68□□□□□ -1.34
HMGB1-207ENST00000468384 VWCEQ96DN2 955 aa6.68□□□□□ -1.34
HMGB1-207ENST00000468384 HOOK2Q96ED9 719 aa6.68□□□□□ -1.34
HMGB1-207ENST00000468384 CCDC97Q96F63 343 aaPredicted RBP6.68□□□□□ -1.34
HMGB1-207ENST00000468384 SLC9A7Q96T83 725 aa6.68□□□□□ -1.34
HMGB1-207ENST00000468384 SNRKQ9NRH2 765 aa6.68□□□□□ -1.34
HMGB1-207ENST00000468384 MORF4L1Q9UBU8 362 aa6.68□□□□□ -1.34
HMGB1-207ENST00000468384 CTNNA3Q9UI47 895 aa6.68□□□□□ -1.34
HMGB1-207ENST00000468384 CD207Q9UJ71 328 aa6.68□□□□□ -1.34
HMGB1-207ENST00000468384 SERPINA10Q9UK55 444 aa6.68□□□□□ -1.34
HMGB1-207ENST00000468384 ADGRG1Q9Y653 693 aa6.68□□□□□ -1.34
HMGB1-207ENST00000468384 XDHP47989 1333 aa6.68□□□□□ -1.34
HMGB1-207ENST00000468384 MED23Q9ULK4 1368 aa6.68□□□□□ -1.34
HMGB1-207ENST00000468384 NCK2O43639 380 aa6.67□□□□□ -1.34
HMGB1-207ENST00000468384 KINO60870 393 aaKnown RBP6.67□□□□□ -1.34
HMGB1-207ENST00000468384 MAFO75444 373 aaPredicted RBP6.67□□□□□ -1.34
HMGB1-207ENST00000468384 OATP04181 439 aa6.67□□□□□ -1.34
HMGB1-207ENST00000468384 HOXD8P13378 290 aaPredicted RBP6.67□□□□□ -1.34
HMGB1-207ENST00000468384 AOC1P19801 751 aa6.67□□□□□ -1.34
HMGB1-207ENST00000468384 SPINK2P20155 84 aa6.67□□□□□ -1.34
HMGB1-207ENST00000468384 POU3F2P20265 443 aaPredicted RBP6.67□□□□□ -1.34
HMGB1-207ENST00000468384 ATP2B4P23634 1241 aa6.67□□□□□ -1.34
HMGB1-207ENST00000468384 MAPK4P31152 587 aa6.67□□□□□ -1.34
HMGB1-207ENST00000468384 RFC5P40937 340 aa6.67□□□□□ -1.34
HMGB1-207ENST00000468384 ATP2B2Q01814 1243 aa6.67□□□□□ -1.34
HMGB1-207ENST00000468384 SRSF11Q05519 484 aaKnown RBP6.67□□□□□ -1.34
HMGB1-207ENST00000468384 SF3B3Q15393 1217 aaKnown RBP6.67□□□□□ -1.34
HMGB1-207ENST00000468384 PTPROQ16827 1216 aa6.67□□□□□ -1.34
HMGB1-207ENST00000468384 FAM47AQ5JRC9 791 aa6.67□□□□□ -1.34
HMGB1-207ENST00000468384 NOL9Q5SY16 702 aaKnown RBP6.67□□□□□ -1.34
HMGB1-207ENST00000468384 TREML2Q5T2D2 321 aa6.67□□□□□ -1.34
HMGB1-207ENST00000468384 MIGA2Q7L4E1 593 aa6.67□□□□□ -1.34
HMGB1-207ENST00000468384 UBALD2Q8IYN6 164 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms