RNA–Protein interactions for RNA: ENST00000467464.1

PTPRF-211, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 571 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-211ENST00000467464 ZNF213O14771 459 aa14.09□□□□□ -0.15
PTPRF-211ENST00000467464 GJA9P57773 515 aa14.09□□□□□ -0.15
PTPRF-211ENST00000467464 TTC22Q5TAA0 569 aa14.09□□□□□ -0.15
PTPRF-211ENST00000467464 GPR153Q6NV75 609 aa14.09□□□□□ -0.15
PTPRF-211ENST00000467464 MORC4Q8TE76 937 aa14.09□□□□□ -0.15
PTPRF-211ENST00000467464 CLEC4DQ8WXI8 215 aa14.09□□□□□ -0.15
PTPRF-211ENST00000467464 ESR2Q92731 530 aa14.09□□□□□ -0.15
PTPRF-211ENST00000467464 ZKSCAN3Q9BRR0 538 aa14.09□□□□□ -0.15
PTPRF-211ENST00000467464 RNF41Q9H4P4 317 aaPredicted RBP14.09□□□□□ -0.15
PTPRF-211ENST00000467464 GPCPD1Q9NPB8 672 aa14.09□□□□□ -0.15
PTPRF-211ENST00000467464 ZNFX1Q9P2E3 1918 aaKnown RBP14.08□□□□□ -0.16
PTPRF-211ENST00000467464 LAMA2P24043 3122 aaKnown RBP14.08□□□□□ -0.16
PTPRF-211ENST00000467464 KDM4AO75164 1064 aa14.08□□□□□ -0.16
PTPRF-211ENST00000467464 PTGS1P23219 599 aa14.08□□□□□ -0.16
PTPRF-211ENST00000467464 IRX6P78412 446 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-211ENST00000467464 KCNA10Q16322 511 aa14.08□□□□□ -0.16
PTPRF-211ENST00000467464 ANKRD33Q7Z3H0 272 aa14.08□□□□□ -0.16
PTPRF-211ENST00000467464 DGKHQ86XP1 1220 aa14.08□□□□□ -0.16
PTPRF-211ENST00000467464 ANKS1AQ92625 1134 aa14.08□□□□□ -0.16
PTPRF-211ENST00000467464 GNEQ9Y223 722 aaKnown RBP14.08□□□□□ -0.16
PTPRF-211ENST00000467464 LAMA4Q16363 1823 aa14.08□□□□□ -0.16
PTPRF-211ENST00000467464 ASB14A6NK59 587 aa14.07□□□□□ -0.16
PTPRF-211ENST00000467464 B4E1Z4 1266 aa14.07□□□□□ -0.16
PTPRF-211ENST00000467464 NT5C2P49902 561 aa14.07□□□□□ -0.16
PTPRF-211ENST00000467464 TMEM63BQ5T3F8 832 aa14.07□□□□□ -0.16
PTPRF-211ENST00000467464 TAPT1Q6NXT6 567 aa14.07□□□□□ -0.16
PTPRF-211ENST00000467464 NSMFQ6X4W1 530 aa14.07□□□□□ -0.16
PTPRF-211ENST00000467464 ENAHQ8N8S7 591 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-211ENST00000467464 BADQ92934 168 aa14.07□□□□□ -0.16
PTPRF-211ENST00000467464 LBHD1Q9BQE6 289 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-211ENST00000467464 ZSWIM5Q9P217 1185 aa14.07□□□□□ -0.16
PTPRF-211ENST00000467464 WDR19Q8NEZ3 1342 aa14.07□□□□□ -0.16
PTPRF-211ENST00000467464 LCTP09848 1927 aa14.06□□□□□ -0.16
PTPRF-211ENST00000467464 KIAA0355O15063 1070 aa14.06□□□□□ -0.16
PTPRF-211ENST00000467464 ASGR1P07306 291 aa14.06□□□□□ -0.16
PTPRF-211ENST00000467464 CLTBP09497 229 aa14.06□□□□□ -0.16
PTPRF-211ENST00000467464 C6orf222P0C671 652 aaPredicted RBP14.06□□□□□ -0.16
PTPRF-211ENST00000467464 CDK7P50613 346 aa14.06□□□□□ -0.16
PTPRF-211ENST00000467464 FAAP100Q0VG06 881 aa14.06□□□□□ -0.16
PTPRF-211ENST00000467464 BAATQ14032 418 aaPredicted RBP14.06□□□□□ -0.16
PTPRF-211ENST00000467464 C9orf50Q5SZB4 431 aa14.06□□□□□ -0.16
PTPRF-211ENST00000467464 SLC30A10Q6XR72 485 aa14.06□□□□□ -0.16
PTPRF-211ENST00000467464 Q7L0L9 218 aa14.06□□□□□ -0.16
PTPRF-211ENST00000467464 PNMA1Q8ND90 353 aa14.06□□□□□ -0.16
PTPRF-211ENST00000467464 TOX2Q96NM4 488 aa14.06□□□□□ -0.16
PTPRF-211ENST00000467464 CPVLQ9H3G5 476 aa14.06□□□□□ -0.16
PTPRF-211ENST00000467464 PRDM5Q9NQX1 630 aaPredicted RBP14.06□□□□□ -0.16
PTPRF-211ENST00000467464 STARD7Q9NQZ5 370 aa14.06□□□□□ -0.16
PTPRF-211ENST00000467464 PDGFCQ9NRA1 345 aa14.06□□□□□ -0.16
PTPRF-211ENST00000467464 PRKAG2Q9UGJ0 569 aa14.06□□□□□ -0.16
PTPRF-211ENST00000467464 RAD50Q92878 1312 aa14.06□□□□□ -0.16
PTPRF-211ENST00000467464 COL6A3P12111 3177 aa14.06□□□□□ -0.16
PTPRF-211ENST00000467464 PQBP1O60828 265 aaKnown RBP14.05□□□□□ -0.16
PTPRF-211ENST00000467464 GOLGA8HP0CJ92 632 aa14.05□□□□□ -0.16
PTPRF-211ENST00000467464 SMPD1P17405 629 aa14.05□□□□□ -0.16
PTPRF-211ENST00000467464 ALDH5A1P51649 535 aaPredicted RBP14.05□□□□□ -0.16
PTPRF-211ENST00000467464 EPHB4P54760 987 aa14.05□□□□□ -0.16
PTPRF-211ENST00000467464 SHHQ15465 462 aa14.05□□□□□ -0.16
PTPRF-211ENST00000467464 GPATCH4Q5T3I0 446 aaKnown RBP14.05□□□□□ -0.16
PTPRF-211ENST00000467464 FBXO16Q8IX29 292 aaPredicted RBP14.05□□□□□ -0.16
PTPRF-211ENST00000467464 NUP133Q8WUM0 1156 aa14.05□□□□□ -0.16
PTPRF-211ENST00000467464 ZSCAN10Q96SZ4 725 aaPredicted RBP14.05□□□□□ -0.16
PTPRF-211ENST00000467464 TBX21Q9UL17 535 aa14.05□□□□□ -0.16
PTPRF-211ENST00000467464 ELP1O95163 1332 aa14.05□□□□□ -0.16
PTPRF-211ENST00000467464 TNKSO95271 1327 aa14.05□□□□□ -0.16
PTPRF-211ENST00000467464 EDNRBP24530 442 aa14.04□□□□□ -0.16
PTPRF-211ENST00000467464 CHMLP26374 656 aa14.04□□□□□ -0.16
PTPRF-211ENST00000467464 BEX3Q00994 111 aa14.04□□□□□ -0.16
PTPRF-211ENST00000467464 TNFAIP2Q03169 654 aa14.04□□□□□ -0.16
PTPRF-211ENST00000467464 PTH1RQ03431 593 aa14.04□□□□□ -0.16
PTPRF-211ENST00000467464 SEC23AQ15436 765 aa14.04□□□□□ -0.16
PTPRF-211ENST00000467464 IMMTQ16891 758 aaKnown RBP14.04□□□□□ -0.16
PTPRF-211ENST00000467464 TLK2Q86UE8 772 aa14.04□□□□□ -0.16
PTPRF-211ENST00000467464 IQCA1Q86XH1 822 aa14.04□□□□□ -0.16
PTPRF-211ENST00000467464 SLC43A3Q8NBI5 491 aa14.04□□□□□ -0.16
PTPRF-211ENST00000467464 PCSK9Q8NBP7 692 aaKnown RBP14.04□□□□□ -0.16
PTPRF-211ENST00000467464 UBA5Q9GZZ9 404 aa14.04□□□□□ -0.16
PTPRF-211ENST00000467464 VTA1Q9NP79 307 aa14.04□□□□□ -0.16
PTPRF-211ENST00000467464 CTNNA3Q9UI47 895 aa14.04□□□□□ -0.16
PTPRF-211ENST00000467464 TAF6LQ9Y6J9 622 aa14.04□□□□□ -0.16
PTPRF-211ENST00000467464 LOC102724159A0A0B4J2E5 919 aa14.03□□□□□ -0.16
PTPRF-211ENST00000467464 RBM47A0AV96 593 aaKnown RBP14.03□□□□□ -0.16
PTPRF-211ENST00000467464 RPS6P62753 249 aaKnown RBP14.03□□□□□ -0.16
PTPRF-211ENST00000467464 PWP2Q15269 919 aaKnown RBP14.03□□□□□ -0.16
PTPRF-211ENST00000467464 CCDC178Q5BJE1 867 aa14.03□□□□□ -0.16
PTPRF-211ENST00000467464 GNASQ5JWF2 1037 aa14.03□□□□□ -0.16
PTPRF-211ENST00000467464 CYB5R4Q7L1T6 521 aa14.03□□□□□ -0.16
PTPRF-211ENST00000467464 EEPD1Q7L9B9 569 aa14.03□□□□□ -0.16
PTPRF-211ENST00000467464 DEFB123Q8N688 67 aa14.03□□□□□ -0.16
PTPRF-211ENST00000467464 GLT1D1Q96MS3 346 aa14.03□□□□□ -0.16
PTPRF-211ENST00000467464 MTMR10Q9NXD2 777 aa14.03□□□□□ -0.16
PTPRF-211ENST00000467464 GRIN2DO15399 1336 aa14.03□□□□□ -0.16
PTPRF-211ENST00000467464 SMCHD1A6NHR9 2005 aa14.03□□□□□ -0.16
PTPRF-211ENST00000467464 A0A0U1RQG5 324 aaPredicted RBP14.02□□□□□ -0.17
PTPRF-211ENST00000467464 PTPDC1A2A3K4 754 aa14.02□□□□□ -0.17
PTPRF-211ENST00000467464 ARVCFO00192 962 aa14.02□□□□□ -0.17
PTPRF-211ENST00000467464 CYP21A2P08686 494 aa14.02□□□□□ -0.17
PTPRF-211ENST00000467464 IQSEC1Q6DN90 963 aa14.02□□□□□ -0.17
PTPRF-211ENST00000467464 FAM109BQ6ICB4 259 aaPredicted RBP14.02□□□□□ -0.17
PTPRF-211ENST00000467464 FAM126BQ8IXS8 530 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms