RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 SLC16A2P36021 539 aa22.59■■□□□ 1.21
COL9A3-206ENST00000466532 GNASQ5JWF2 1037 aa22.59■■□□□ 1.21
COL9A3-206ENST00000466532 TTBK2Q6IQ55 1244 aa22.59■■□□□ 1.21
COL9A3-206ENST00000466532 VTI1AQ96AJ9 217 aa22.59■■□□□ 1.21
COL9A3-206ENST00000466532 FAM161BQ96MY7 647 aa22.59■■□□□ 1.21
COL9A3-206ENST00000466532 RANBP17Q9H2T7 1088 aaKnown RBP22.59■■□□□ 1.21
COL9A3-206ENST00000466532 TCP11L1Q9NUJ3 509 aa22.59■■□□□ 1.21
COL9A3-206ENST00000466532 CYP39A1Q9NYL5 469 aa22.59■■□□□ 1.21
COL9A3-206ENST00000466532 MROH7Q68CQ1 1323 aa22.58■■□□□ 1.21
COL9A3-206ENST00000466532 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.58■■□□□ 1.21
COL9A3-206ENST00000466532 ICAM1P05362 532 aa22.58■■□□□ 1.21
COL9A3-206ENST00000466532 TNFAIP2Q03169 654 aa22.58■■□□□ 1.21
COL9A3-206ENST00000466532 ZNF697Q5TEC3 545 aa22.58■■□□□ 1.21
COL9A3-206ENST00000466532 NSMFQ6X4W1 530 aa22.58■■□□□ 1.21
COL9A3-206ENST00000466532 NOL8Q76FK4 1167 aaKnown RBP22.58■■□□□ 1.21
COL9A3-206ENST00000466532 GPCPD1Q9NPB8 672 aa22.58■■□□□ 1.21
COL9A3-206ENST00000466532 ASTN1O14525 1302 aa22.57■■□□□ 1.2
COL9A3-206ENST00000466532 FRMPD2Q68DX3 1309 aaPredicted RBP22.57■■□□□ 1.2
COL9A3-206ENST00000466532 SDSP20132 328 aa22.57■■□□□ 1.2
COL9A3-206ENST00000466532 EPHB4P54760 987 aa22.57■■□□□ 1.2
COL9A3-206ENST00000466532 MFAP1P55081 439 aaKnown RBP22.57■■□□□ 1.2
COL9A3-206ENST00000466532 FPGSQ05932 587 aa22.57■■□□□ 1.2
COL9A3-206ENST00000466532 AKNAD1Q5T1N1 836 aa22.57■■□□□ 1.2
COL9A3-206ENST00000466532 SYDE2Q5VT97 1194 aa22.57■■□□□ 1.2
COL9A3-206ENST00000466532 BTNL9Q6UXG8 535 aa22.57■■□□□ 1.2
COL9A3-206ENST00000466532 MFSD6Q6ZSS7 791 aa22.57■■□□□ 1.2
COL9A3-206ENST00000466532 CHD1LQ86WJ1 897 aa22.57■■□□□ 1.2
COL9A3-206ENST00000466532 GUCD1Q96NT3 240 aa22.57■■□□□ 1.2
COL9A3-206ENST00000466532 DDX49Q9Y6V7 483 aaKnown RBP22.57■■□□□ 1.2
COL9A3-206ENST00000466532 A0A0U1RQG5 324 aaPredicted RBP22.56■■□□□ 1.2
COL9A3-206ENST00000466532 CTAGE5O15320 804 aa22.56■■□□□ 1.2
COL9A3-206ENST00000466532 PCP11498 1178 aaKnown RBP22.56■■□□□ 1.2
COL9A3-206ENST00000466532 BEX3Q00994 111 aa22.56■■□□□ 1.2
COL9A3-206ENST00000466532 PLEKHM2Q8IWE5 1019 aa22.56■■□□□ 1.2
COL9A3-206ENST00000466532 IGHDP01880 384 aa22.55■■□□□ 1.2
COL9A3-206ENST00000466532 PDHBP11177 359 aa22.55■■□□□ 1.2
COL9A3-206ENST00000466532 CDK7P50613 346 aa22.55■■□□□ 1.2
COL9A3-206ENST00000466532 NKX3-2P78367 333 aa22.55■■□□□ 1.2
COL9A3-206ENST00000466532 EEPD1Q7L9B9 569 aa22.55■■□□□ 1.2
COL9A3-206ENST00000466532 TLK2Q86UE8 772 aa22.55■■□□□ 1.2
COL9A3-206ENST00000466532 TBC1D10CQ8IV04 446 aa22.55■■□□□ 1.2
COL9A3-206ENST00000466532 FBXO16Q8IX29 292 aaPredicted RBP22.55■■□□□ 1.2
COL9A3-206ENST00000466532 RNPC3Q96LT9 517 aaKnown RBP22.55■■□□□ 1.2
COL9A3-206ENST00000466532 OSBPL3Q9H4L5 887 aa22.55■■□□□ 1.2
COL9A3-206ENST00000466532 TBX21Q9UL17 535 aa22.55■■□□□ 1.2
COL9A3-206ENST00000466532 ARVCFO00192 962 aa22.54■■□□□ 1.2
COL9A3-206ENST00000466532 TIMP1P01033 207 aa22.54■■□□□ 1.2
COL9A3-206ENST00000466532 SMAD3P84022 425 aaKnown RBP22.54■■□□□ 1.2
COL9A3-206ENST00000466532 NUCB1Q02818 461 aa22.54■■□□□ 1.2
COL9A3-206ENST00000466532 TTC14Q96N46 770 aa22.54■■□□□ 1.2
COL9A3-206ENST00000466532 PURBQ96QR8 312 aaKnown RBP22.54■■□□□ 1.2
COL9A3-206ENST00000466532 RNF41Q9H4P4 317 aaPredicted RBP22.54■■□□□ 1.2
COL9A3-206ENST00000466532 PDGFCQ9NRA1 345 aa22.54■■□□□ 1.2
COL9A3-206ENST00000466532 GNEQ9Y223 722 aaKnown RBP22.54■■□□□ 1.2
COL9A3-206ENST00000466532 SMPD1P17405 629 aa22.53■■□□□ 1.2
COL9A3-206ENST00000466532 BAATQ14032 418 aaPredicted RBP22.53■■□□□ 1.2
COL9A3-206ENST00000466532 TAPT1Q6NXT6 567 aa22.53■■□□□ 1.2
COL9A3-206ENST00000466532 EXOC6Q8TAG9 804 aa22.53■■□□□ 1.2
COL9A3-206ENST00000466532 AP5M1Q9H0R1 490 aa22.53■■□□□ 1.2
COL9A3-206ENST00000466532 DIAPH3Q9NSV4 1193 aa22.53■■□□□ 1.2
COL9A3-206ENST00000466532 NEDD4P46934 1319 aa22.53■■□□□ 1.2
COL9A3-206ENST00000466532 NFIBO00712 420 aa22.52■■□□□ 1.2
COL9A3-206ENST00000466532 ZNF213O14771 459 aa22.52■■□□□ 1.2
COL9A3-206ENST00000466532 PTGS1P23219 599 aa22.52■■□□□ 1.2
COL9A3-206ENST00000466532 ZNF543Q08ER8 600 aa22.52■■□□□ 1.2
COL9A3-206ENST00000466532 IQSEC1Q6DN90 963 aa22.52■■□□□ 1.2
COL9A3-206ENST00000466532 CWC27Q6UX04 472 aaKnown RBP22.52■■□□□ 1.2
COL9A3-206ENST00000466532 CXCL17Q6UXB2 119 aa22.52■■□□□ 1.2
COL9A3-206ENST00000466532 FAM126BQ8IXS8 530 aa22.52■■□□□ 1.2
COL9A3-206ENST00000466532 ESR2Q92731 530 aa22.52■■□□□ 1.2
COL9A3-206ENST00000466532 VTA1Q9NP79 307 aa22.52■■□□□ 1.2
COL9A3-206ENST00000466532 ADD3Q9UEY8 706 aaKnown RBP22.52■■□□□ 1.2
COL9A3-206ENST00000466532 GBF1Q92538 1859 aa22.51■■□□□ 1.19
COL9A3-206ENST00000466532 PTPDC1A2A3K4 754 aa22.51■■□□□ 1.19
COL9A3-206ENST00000466532 DLL1O00548 723 aa22.51■■□□□ 1.19
COL9A3-206ENST00000466532 TLR3O15455 904 aaKnown RBP22.51■■□□□ 1.19
COL9A3-206ENST00000466532 DYNC1LI2O43237 492 aaPredicted RBP22.51■■□□□ 1.19
COL9A3-206ENST00000466532 ALDH5A1P51649 535 aaPredicted RBP22.51■■□□□ 1.19
COL9A3-206ENST00000466532 FSCN1Q16658 493 aaKnown RBP22.51■■□□□ 1.19
COL9A3-206ENST00000466532 MFSD5Q6N075 450 aa22.51■■□□□ 1.19
COL9A3-206ENST00000466532 MORC4Q8TE76 937 aa22.51■■□□□ 1.19
COL9A3-206ENST00000466532 ZKSCAN3Q9BRR0 538 aa22.51■■□□□ 1.19
COL9A3-206ENST00000466532 CABYRO75952 493 aa22.5■■□□□ 1.19
COL9A3-206ENST00000466532 SNHG28P0DPA3 235 aa22.5■■□□□ 1.19
COL9A3-206ENST00000466532 TMEM63BQ5T3F8 832 aa22.5■■□□□ 1.19
COL9A3-206ENST00000466532 KIAA1211Q6ZU35 1233 aa22.5■■□□□ 1.19
COL9A3-206ENST00000466532 SEMA6BQ9H3T3 888 aa22.5■■□□□ 1.19
COL9A3-206ENST00000466532 PNMA2Q9UL42 364 aa22.5■■□□□ 1.19
COL9A3-206ENST00000466532 KIAA1217Q5T5P2 1943 aa22.49■■□□□ 1.19
COL9A3-206ENST00000466532 HIP1O00291 1037 aa22.49■■□□□ 1.19
COL9A3-206ENST00000466532 ZEB2O60315 1214 aa22.49■■□□□ 1.19
COL9A3-206ENST00000466532 PPIGQ13427 754 aaKnown RBP eCLIP22.49■■□□□ 1.191e-24■■□□□ 13.5
COL9A3-206ENST00000466532 SLC30A10Q6XR72 485 aa22.49■■□□□ 1.19
COL9A3-206ENST00000466532 CDX2Q99626 313 aaPredicted RBP22.49■■□□□ 1.19
COL9A3-206ENST00000466532 PPP1R12CQ9BZL4 782 aa22.49■■□□□ 1.19
COL9A3-206ENST00000466532 TTYH1Q9H313 450 aaPredicted RBP22.49■■□□□ 1.19
COL9A3-206ENST00000466532 Q9Y3F1 56 aa22.49■■□□□ 1.19
COL9A3-206ENST00000466532 LOC102724159A0A0B4J2E5 919 aa22.48■■□□□ 1.19
COL9A3-206ENST00000466532 CD4P01730 458 aa22.48■■□□□ 1.19
COL9A3-206ENST00000466532 CALML3P27482 149 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms