RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ABHD10Q9NUJ1 306 aa10.06□□□□□ -0.8
SYNE1-217ENST00000466159 MRFAP1Q9Y605 127 aa10.06□□□□□ -0.8
SYNE1-217ENST00000466159 TRIM37O94972 964 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 ABL1P00519 1130 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 TPM1P09493 284 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 SMARCA1P28370 1054 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 CLCN6P51797 869 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 GABPAQ06546 454 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 DPP8Q6V1X1 898 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-217ENST00000466159 POTEDQ86YR6 584 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 SP8Q8IXZ3 490 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 REXO1Q8N1G1 1221 aaKnown RBP10.05□□□□□ -0.8
SYNE1-217ENST00000466159 ACRBPQ8NEB7 543 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 AK8Q96MA6 479 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 PRDM4Q9UKN5 801 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 FOCADQ5VW36 1801 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 KLRG2A4D1S0 409 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-217ENST00000466159 EFCAB8A8MWE9 144 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 MYL1P05976 194 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 FECHP22830 423 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 TXKP42681 527 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 CCDC51Q96ER9 411 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 TRIM47Q96LD4 638 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 MMTAG2Q9BU76 263 aaKnown RBP10.05□□□□□ -0.8
SYNE1-217ENST00000466159 TRIM9Q9C026 710 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 GPCPD1Q9NPB8 672 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 LTBP1Q14766 1721 aa10.05□□□□□ -0.8
SYNE1-217ENST00000466159 PES1O00541 588 aaKnown RBP10.04□□□□□ -0.8
SYNE1-217ENST00000466159 PSMA7O14818 248 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 SLURP2P0DP57 97 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 KRT9P35527 623 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 SCNN1DP51172 638 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 STK4Q13043 487 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 DOK7Q18PE1 504 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 SLC27A3Q5K4L6 730 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 TTI2Q6NXR4 508 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 TRPC5Q9UL62 973 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-217ENST00000466159 TTF2Q9UNY4 1162 aaKnown RBP10.04□□□□□ -0.8
SYNE1-217ENST00000466159 EDIL3O43854 480 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 FCER1AP12319 257 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 PPP2R3AQ06190 1150 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 PDE4DQ08499 809 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 STIM1Q13586 685 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 TMTC1Q8IUR5 882 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 PROM2Q8N271 834 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 MB21D1Q8N884 522 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 HPS3Q969F9 1004 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 CHP1Q99653 195 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 DUSP9Q99956 384 aaKnown RBP10.04□□□□□ -0.8
SYNE1-217ENST00000466159 COA1Q9GZY4 146 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 CUEDC2Q9H467 287 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 ATP6V0A2Q9Y487 856 aa10.04□□□□□ -0.8
SYNE1-217ENST00000466159 TTC26A0AVF1 554 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 ESYT2A0FGR8 921 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 SLC37A4O43826 429 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 ASIC1P78348 528 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 ZNF569Q5MCW4 686 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 ZNF507Q8TCN5 953 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 ZC3H12CQ9C0D7 883 aaKnown RBP10.03□□□□□ -0.8
SYNE1-217ENST00000466159 THAP9Q9H5L6 903 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 USP40Q9NVE5 1235 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 PLIN4Q96Q06 1357 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 LRRC37AA6NMS7 1700 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 IGKV6D-41A0A0C4DH26 115 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 LGALS16A8MUM7 142 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 KIF5CO60282 957 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 TDP2O95551 362 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 SNHG28P0DPA3 235 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 EEF1GP26641 437 aaKnown RBP10.03□□□□□ -0.8
SYNE1-217ENST00000466159 TRIM14Q14142 442 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 ASPRV1Q53RT3 343 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 ANKRD40Q6AI12 368 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 TTBK2Q6IQ55 1244 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 CYP26C1Q6V0L0 522 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 CSGALNACT2Q8N6G5 542 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 MTMR9Q96QG7 549 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 C7orf25Q9BPX7 421 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 EXOC1Q9NV70 894 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 FAM53CQ9NYF3 392 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 SERPINB13Q9UIV8 391 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 B4DLN1 442 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 PPP1R11O60927 126 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-217ENST00000466159 SLC16A2P36021 539 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 ADCY7P51828 1080 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 GRB10Q13322 594 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 CALCRLQ16602 461 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 TEX35Q5T0J7 233 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 P2RX5Q93086 422 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 DHTKD1Q96HY7 919 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-217ENST00000466159 SLF1Q9BQI6 1058 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 ZSWIM4Q9H7M6 989 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 JMJD4Q9H9V9 463 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 MAGEF1Q9HAY2 307 aa10.03□□□□□ -0.8
SYNE1-217ENST00000466159 MAGEC2Q9UBF1 373 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-217ENST00000466159 ANKRD31Q8N7Z5 1873 aa10.02□□□□□ -0.8
SYNE1-217ENST00000466159 ADAMTSL1Q8N6G6 1762 aa10.02□□□□□ -0.8
SYNE1-217ENST00000466159 NKRFO15226 690 aaKnown RBP eCLIP10.02□□□□□ -0.81
SYNE1-217ENST00000466159 TTLL1O95922 423 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 SRGNP10124 158 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 SHMT1P34896 483 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms