RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 HSPA4P34932 840 aa20.72■□□□□ 0.91
COL7A1-205ENST00000465238 IKQ13123 557 aaPredicted RBP20.72■□□□□ 0.91
COL7A1-205ENST00000465238 KRT32Q14532 448 aa20.72■□□□□ 0.91
COL7A1-205ENST00000465238 SART3Q15020 963 aaKnown RBP20.72■□□□□ 0.91
COL7A1-205ENST00000465238 RCSD1Q6JBY9 416 aa20.72■□□□□ 0.91
COL7A1-205ENST00000465238 LENG1Q96BZ8 264 aaPredicted RBP20.72■□□□□ 0.91
COL7A1-205ENST00000465238 ABHD16BQ9H3Z7 469 aa20.72■□□□□ 0.91
COL7A1-205ENST00000465238 TNKSO95271 1327 aa20.72■□□□□ 0.91
COL7A1-205ENST00000465238 SYNRGQ9UMZ2 1314 aa20.72■□□□□ 0.91
COL7A1-205ENST00000465238 DUSP11O75319 330 aaKnown RBP20.71■□□□□ 0.91
COL7A1-205ENST00000465238 MCCP23508 829 aa20.71■□□□□ 0.91
COL7A1-205ENST00000465238 ACVR2BQ13705 512 aa20.71■□□□□ 0.91
COL7A1-205ENST00000465238 TSGA10IPQ3SY00 556 aa20.71■□□□□ 0.91
COL7A1-205ENST00000465238 ANKS1AQ92625 1134 aa20.71■□□□□ 0.91
COL7A1-205ENST00000465238 BADQ92934 168 aa20.71■□□□□ 0.91
COL7A1-205ENST00000465238 USP26Q9BXU7 913 aa20.71■□□□□ 0.91
COL7A1-205ENST00000465238 ACAD9Q9H845 621 aa20.71■□□□□ 0.91
COL7A1-205ENST00000465238 KAT14Q9H8E8 782 aa20.71■□□□□ 0.91
COL7A1-205ENST00000465238 MTMR10Q9NXD2 777 aa20.71■□□□□ 0.91
COL7A1-205ENST00000465238 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.71■□□□□ 0.91
COL7A1-205ENST00000465238 MTMR7Q9Y216 660 aa20.71■□□□□ 0.91
COL7A1-205ENST00000465238 TRIM43BA6NCK2 446 aa20.7■□□□□ 0.9
COL7A1-205ENST00000465238 MOXD2PA6NHM9 499 aa20.7■□□□□ 0.9
COL7A1-205ENST00000465238 IFIT3O14879 490 aaKnown RBP20.7■□□□□ 0.9
COL7A1-205ENST00000465238 MCM5P33992 734 aa20.7■□□□□ 0.9
COL7A1-205ENST00000465238 ACLYP53396 1101 aa20.7■□□□□ 0.9
COL7A1-205ENST00000465238 TKFCQ3LXA3 575 aa20.7■□□□□ 0.9
COL7A1-205ENST00000465238 FAM109BQ6ICB4 259 aaPredicted RBP20.7■□□□□ 0.9
COL7A1-205ENST00000465238 CHST3Q7LGC8 479 aa20.7■□□□□ 0.9
COL7A1-205ENST00000465238 SH3RF1Q7Z6J0 888 aa20.7■□□□□ 0.9
COL7A1-205ENST00000465238 MB21D2Q8IYB1 491 aaPredicted RBP20.7■□□□□ 0.9
COL7A1-205ENST00000465238 RASEFQ8IZ41 740 aa20.7■□□□□ 0.9
COL7A1-205ENST00000465238 ENAHQ8N8S7 591 aaPredicted RBP20.7■□□□□ 0.9
COL7A1-205ENST00000465238 SLC17A8Q8NDX2 589 aa20.7■□□□□ 0.9
COL7A1-205ENST00000465238 KLHDC9Q8NEP7 349 aa20.7■□□□□ 0.9
COL7A1-205ENST00000465238 NUP133Q8WUM0 1156 aa20.7■□□□□ 0.9
COL7A1-205ENST00000465238 TRIM43Q96BQ3 446 aaPredicted RBP20.7■□□□□ 0.9
COL7A1-205ENST00000465238 CHMP4CQ96CF2 233 aa20.7■□□□□ 0.9
COL7A1-205ENST00000465238 FGD4Q96M96 766 aa20.7■□□□□ 0.9
COL7A1-205ENST00000465238 HOMER2Q9NSB8 354 aa20.7■□□□□ 0.9
COL7A1-205ENST00000465238 STXBP5LQ9Y2K9 1186 aa20.7■□□□□ 0.9
COL7A1-205ENST00000465238 A0A0C4DFX4 3053 aa20.69■□□□□ 0.9
COL7A1-205ENST00000465238 CLTBP09497 229 aa20.69■□□□□ 0.9
COL7A1-205ENST00000465238 IFIT1BQ5T764 474 aaKnown RBP20.69■□□□□ 0.9
COL7A1-205ENST00000465238 ARMCX2Q7L311 632 aa20.69■□□□□ 0.9
COL7A1-205ENST00000465238 KCNB2Q92953 911 aa20.69■□□□□ 0.9
COL7A1-205ENST00000465238 NEK1Q96PY6 1258 aa20.69■□□□□ 0.9
COL7A1-205ENST00000465238 STARD7Q9NQZ5 370 aa20.69■□□□□ 0.9
COL7A1-205ENST00000465238 RNF146Q9NTX7 359 aa20.69■□□□□ 0.9
COL7A1-205ENST00000465238 ZNF536O15090 1300 aa20.69■□□□□ 0.9
COL7A1-205ENST00000465238 POTEB2H3BUK9 544 aa20.68■□□□□ 0.9
COL7A1-205ENST00000465238 PRC1O43663 620 aa20.68■□□□□ 0.9
COL7A1-205ENST00000465238 CST5P28325 142 aaPredicted RBP20.68■□□□□ 0.9
COL7A1-205ENST00000465238 SHHQ15465 462 aa20.68■□□□□ 0.9
COL7A1-205ENST00000465238 CCDC144BQ3MJ40 725 aa20.68■□□□□ 0.9
COL7A1-205ENST00000465238 CCSAPQ6IQ19 270 aaPredicted RBP20.68■□□□□ 0.9
COL7A1-205ENST00000465238 KCTD1Q719H9 257 aa20.68■□□□□ 0.9
COL7A1-205ENST00000465238 CCDC144CPQ8IYA2 1237 aa20.68■□□□□ 0.9
COL7A1-205ENST00000465238 FAM133AQ8N9E0 248 aa20.68■□□□□ 0.9
COL7A1-205ENST00000465238 DCAF4Q8WV16 495 aa20.68■□□□□ 0.9
COL7A1-205ENST00000465238 AGBL1Q96MI9 1066 aa20.68■□□□□ 0.9
COL7A1-205ENST00000465238 TOX2Q96NM4 488 aa20.68■□□□□ 0.9
COL7A1-205ENST00000465238 SPC25Q9HBM1 224 aa20.68■□□□□ 0.9
COL7A1-205ENST00000465238 A1CFQ9NQ94 594 aaKnown RBP20.68■□□□□ 0.9
COL7A1-205ENST00000465238 KIAA0355O15063 1070 aa20.67■□□□□ 0.9
COL7A1-205ENST00000465238 PQBP1O60828 265 aaKnown RBP20.67■□□□□ 0.9
COL7A1-205ENST00000465238 ANTXR2P58335 489 aa20.67■□□□□ 0.9
COL7A1-205ENST00000465238 CNTN2Q02246 1040 aa20.67■□□□□ 0.9
COL7A1-205ENST00000465238 WTAPQ15007 396 aa20.67■□□□□ 0.9
COL7A1-205ENST00000465238 SEC23AQ15436 765 aa20.67■□□□□ 0.9
COL7A1-205ENST00000465238 KCNA10Q16322 511 aa20.67■□□□□ 0.9
COL7A1-205ENST00000465238 CCDC96Q2M329 555 aa20.67■□□□□ 0.9
COL7A1-205ENST00000465238 TMEM67Q5HYA8 995 aa20.67■□□□□ 0.9
COL7A1-205ENST00000465238 ANKRD33Q7Z3H0 272 aa20.67■□□□□ 0.9
COL7A1-205ENST00000465238 PCSK9Q8NBP7 692 aaKnown RBP20.67■□□□□ 0.9
COL7A1-205ENST00000465238 PNMA1Q8ND90 353 aa20.67■□□□□ 0.9
COL7A1-205ENST00000465238 TRERF1Q96PN7 1200 aa20.67■□□□□ 0.9
COL7A1-205ENST00000465238 MTA3Q9BTC8 594 aa20.67■□□□□ 0.9
COL7A1-205ENST00000465238 PRR12Q9ULL5 1215 aa20.67■□□□□ 0.9
COL7A1-205ENST00000465238 SNX14Q9Y5W7 946 aa20.67■□□□□ 0.9
COL7A1-205ENST00000465238 DCDC2CA8MYV0 355 aa20.66■□□□□ 0.9
COL7A1-205ENST00000465238 HMGB1P09429 215 aaKnown RBP20.66■□□□□ 0.9
COL7A1-205ENST00000465238 C6orf222P0C671 652 aaPredicted RBP20.66■□□□□ 0.9
COL7A1-205ENST00000465238 ALAS1P13196 640 aa20.66■□□□□ 0.9
COL7A1-205ENST00000465238 GJA9P57773 515 aa20.66■□□□□ 0.9
COL7A1-205ENST00000465238 ADCK5Q3MIX3 580 aa20.66■□□□□ 0.9
COL7A1-205ENST00000465238 C9orf50Q5SZB4 431 aa20.66■□□□□ 0.9
COL7A1-205ENST00000465238 GLT1D1Q96MS3 346 aa20.66■□□□□ 0.9
COL7A1-205ENST00000465238 UPF3AQ9H1J1 476 aaKnown RBP20.66■□□□□ 0.9
COL7A1-205ENST00000465238 ELP1O95163 1332 aa20.66■□□□□ 0.9
COL7A1-205ENST00000465238 ASB14A6NK59 587 aa20.65■□□□□ 0.9
COL7A1-205ENST00000465238 ADCY6O43306 1168 aa20.65■□□□□ 0.9
COL7A1-205ENST00000465238 RAG1P15918 1043 aa20.65■□□□□ 0.9
COL7A1-205ENST00000465238 CCDC174Q6PII3 467 aa20.65■□□□□ 0.9
COL7A1-205ENST00000465238 IGDCC4Q8TDY8 1250 aa20.65■□□□□ 0.9
COL7A1-205ENST00000465238 TMEM87BQ96K49 555 aa20.65■□□□□ 0.9
COL7A1-205ENST00000465238 KATNBL1Q9H079 304 aa20.65■□□□□ 0.9
COL7A1-205ENST00000465238 TMEM39AQ9NV64 488 aa20.65■□□□□ 0.9
COL7A1-205ENST00000465238 MROH7Q68CQ1 1323 aa20.64■□□□□ 0.89
COL7A1-205ENST00000465238 MYADML2A6NDP7 307 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms