RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 DNAJC25-GNG10A0A024R161 153 aa6.12□□□□□ -1.43
VPS41-210ENST00000462429 ESYT3A0FGR9 886 aa6.12□□□□□ -1.43
VPS41-210ENST00000462429 HYAL3O43820 417 aaPredicted RBP6.12□□□□□ -1.43
VPS41-210ENST00000462429 DLX3O60479 287 aa6.12□□□□□ -1.43
VPS41-210ENST00000462429 TBC1D8O95759 1140 aa6.12□□□□□ -1.43
VPS41-210ENST00000462429 THBDP07204 575 aa6.12□□□□□ -1.43
VPS41-210ENST00000462429 PAMP19021 973 aa6.12□□□□□ -1.43
VPS41-210ENST00000462429 RBM10P98175 930 aaKnown RBP6.12□□□□□ -1.43
VPS41-210ENST00000462429 SF1Q15637 639 aaKnown RBP6.12□□□□□ -1.43
VPS41-210ENST00000462429 FAM209AQ5JX71 171 aa6.12□□□□□ -1.43
VPS41-210ENST00000462429 FOXB2Q5VYV0 432 aa6.12□□□□□ -1.43
VPS41-210ENST00000462429 ZPBP2Q6X784 338 aa6.12□□□□□ -1.43
VPS41-210ENST00000462429 NFXL1Q6ZNB6 911 aa6.12□□□□□ -1.43
VPS41-210ENST00000462429 NLGN1Q8N2Q7 840 aa6.12□□□□□ -1.43
VPS41-210ENST00000462429 SYNPOQ8N3V7 929 aa6.12□□□□□ -1.43
VPS41-210ENST00000462429 EXOC2Q96KP1 924 aa6.12□□□□□ -1.43
VPS41-210ENST00000462429 PTCHD1Q96NR3 888 aa6.12□□□□□ -1.43
VPS41-210ENST00000462429 GPRC5CQ9NQ84 441 aa6.12□□□□□ -1.43
VPS41-210ENST00000462429 ERVK13-1Q9NX77 482 aa6.12□□□□□ -1.43
VPS41-210ENST00000462429 TNFRSF10DQ9UBN6 386 aa6.12□□□□□ -1.43
VPS41-210ENST00000462429 TMEM59LQ9UK28 342 aa6.12□□□□□ -1.43
VPS41-210ENST00000462429 MRPS23Q9Y3D9 190 aaKnown RBP6.12□□□□□ -1.43
VPS41-210ENST00000462429 ZGLP1P0C6A0 271 aa6.11□□□□□ -1.43
VPS41-210ENST00000462429 HSD3B2P26439 372 aa6.11□□□□□ -1.43
VPS41-210ENST00000462429 L1CAMP32004 1257 aa6.11□□□□□ -1.43
VPS41-210ENST00000462429 TCEA2Q15560 299 aa6.11□□□□□ -1.43
VPS41-210ENST00000462429 PRSS53Q2L4Q9 553 aa6.11□□□□□ -1.43
VPS41-210ENST00000462429 SLC35F1Q5T1Q4 408 aa6.11□□□□□ -1.43
VPS41-210ENST00000462429 HLA-DQA1Q5Y7H0 255 aa6.11□□□□□ -1.43
VPS41-210ENST00000462429 E4F1Q66K89 784 aaPredicted RBP6.11□□□□□ -1.43
VPS41-210ENST00000462429 IQCEQ6IPM2 695 aa6.11□□□□□ -1.43
VPS41-210ENST00000462429 C16orf86Q6ZW13 317 aa6.11□□□□□ -1.43
VPS41-210ENST00000462429 ANKS4BQ8N8V4 417 aa6.11□□□□□ -1.43
VPS41-210ENST00000462429 NPLOC4Q8TAT6 608 aa6.11□□□□□ -1.43
VPS41-210ENST00000462429 KISS1RQ969F8 398 aaPredicted RBP6.11□□□□□ -1.43
VPS41-210ENST00000462429 MAP6Q96JE9 813 aa6.11□□□□□ -1.43
VPS41-210ENST00000462429 ADAMTS10Q9H324 1103 aa6.11□□□□□ -1.43
VPS41-210ENST00000462429 CLEC1BQ9P126 229 aa6.11□□□□□ -1.43
VPS41-210ENST00000462429 NPHP3-ACAD11A0A0J9YXS1 232 aa6.1□□□□□ -1.43
VPS41-210ENST00000462429 MEFVO15553 781 aaPredicted RBP6.1□□□□□ -1.43
VPS41-210ENST00000462429 ASMTLO95671 621 aa6.1□□□□□ -1.43
VPS41-210ENST00000462429 PLS3P13797 630 aa6.1□□□□□ -1.43
VPS41-210ENST00000462429 KIR2DL1P43626 348 aaPredicted RBP6.1□□□□□ -1.43
VPS41-210ENST00000462429 KIR2DL2P43627 348 aaPredicted RBP6.1□□□□□ -1.43
VPS41-210ENST00000462429 CYP4F3Q08477 520 aa6.1□□□□□ -1.43
VPS41-210ENST00000462429 KCNAB2Q13303 367 aa6.1□□□□□ -1.43
VPS41-210ENST00000462429 TAF7LQ5H9L4 462 aa6.1□□□□□ -1.43
VPS41-210ENST00000462429 RALGPS1Q5JS13 557 aa6.1□□□□□ -1.43
VPS41-210ENST00000462429 ARTNQ5T4W7 220 aa6.1□□□□□ -1.43
VPS41-210ENST00000462429 ACBD5Q5T8D3 534 aaPredicted RBP6.1□□□□□ -1.43
VPS41-210ENST00000462429 USP53Q70EK8 1073 aa6.1□□□□□ -1.43
VPS41-210ENST00000462429 SPPL2CQ8IUH8 684 aa6.1□□□□□ -1.43
VPS41-210ENST00000462429 PPIL6Q8IXY8 311 aa6.1□□□□□ -1.43
VPS41-210ENST00000462429 OXR1Q8N573 874 aa6.1□□□□□ -1.43
VPS41-210ENST00000462429 FRS2Q8WU20 508 aa6.1□□□□□ -1.43
VPS41-210ENST00000462429 LINC01599Q8WXQ3 324 aa6.1□□□□□ -1.43
VPS41-210ENST00000462429 C1orf159Q96HA4 380 aa6.1□□□□□ -1.43
VPS41-210ENST00000462429 PRDM7Q9NQW5 492 aa6.1□□□□□ -1.43
VPS41-210ENST00000462429 CADPSQ9ULU8 1353 aa6.09□□□□□ -1.43
VPS41-210ENST00000462429 ADAMTS4O75173 837 aa6.09□□□□□ -1.43
VPS41-210ENST00000462429 CANXP27824 592 aaKnown RBP6.09□□□□□ -1.43
VPS41-210ENST00000462429 HK2P52789 917 aa6.09□□□□□ -1.43
VPS41-210ENST00000462429 CHRNEQ04844 493 aa6.09□□□□□ -1.43
VPS41-210ENST00000462429 LAPTM5Q13571 262 aa6.09□□□□□ -1.43
VPS41-210ENST00000462429 TESK1Q15569 626 aa6.09□□□□□ -1.43
VPS41-210ENST00000462429 JAMLQ86YT9 394 aa6.09□□□□□ -1.43
VPS41-210ENST00000462429 KREMEN2Q8NCW0 462 aa6.09□□□□□ -1.43
VPS41-210ENST00000462429 PDZD8Q8NEN9 1154 aa6.09□□□□□ -1.43
VPS41-210ENST00000462429 DCAF4Q8WV16 495 aa6.09□□□□□ -1.43
VPS41-210ENST00000462429 MMP19Q99542 508 aa6.09□□□□□ -1.43
VPS41-210ENST00000462429 G6PC3Q9BUM1 346 aa6.09□□□□□ -1.43
VPS41-210ENST00000462429 ZFP64Q9NPA5 681 aa6.09□□□□□ -1.43
VPS41-210ENST00000462429 A0A1W2PQ45 241 aaPredicted RBP6.08□□□□□ -1.44
VPS41-210ENST00000462429 A0A1W2PQY0 241 aa6.08□□□□□ -1.44
VPS41-210ENST00000462429 FITM1A5D6W6 292 aa6.08□□□□□ -1.44
VPS41-210ENST00000462429 FADS2P1A8MWK0 482 aa6.08□□□□□ -1.44
VPS41-210ENST00000462429 RAC2P15153 192 aa6.08□□□□□ -1.44
VPS41-210ENST00000462429 LTBRP36941 435 aa6.08□□□□□ -1.44
VPS41-210ENST00000462429 GDNFP39905 211 aa6.08□□□□□ -1.44
VPS41-210ENST00000462429 GABREP78334 506 aa6.08□□□□□ -1.44
VPS41-210ENST00000462429 SLC14A2Q15849 920 aa6.08□□□□□ -1.44
VPS41-210ENST00000462429 ZNF792Q3KQV3 632 aa6.08□□□□□ -1.44
VPS41-210ENST00000462429 PLEKHG4Q58EX7 1191 aa6.08□□□□□ -1.44
VPS41-210ENST00000462429 MAMDC2Q7Z304 686 aaPredicted RBP6.08□□□□□ -1.44
VPS41-210ENST00000462429 TMEM52Q8NDY8 209 aa6.08□□□□□ -1.44
VPS41-210ENST00000462429 DIO2Q92813 273 aa6.08□□□□□ -1.44
VPS41-210ENST00000462429 PTPRN2Q92932 1015 aa6.08□□□□□ -1.44
VPS41-210ENST00000462429 HHIPL1Q96JK4 782 aa6.08□□□□□ -1.44
VPS41-210ENST00000462429 FEZ1Q99689 392 aa6.08□□□□□ -1.44
VPS41-210ENST00000462429 MRPL4Q9BYD3 311 aaKnown RBP6.08□□□□□ -1.44
VPS41-210ENST00000462429 NCOA5Q9HCD5 579 aaKnown RBP6.08□□□□□ -1.44
VPS41-210ENST00000462429 MBNL3Q9NUK0 354 aaKnown RBP6.08□□□□□ -1.44
VPS41-210ENST00000462429 PLD2O14939 933 aa6.07□□□□□ -1.44
VPS41-210ENST00000462429 MYO1BO43795 1136 aa6.07□□□□□ -1.44
VPS41-210ENST00000462429 USP2O75604 605 aaPredicted RBP6.07□□□□□ -1.44
VPS41-210ENST00000462429 APPP05067 770 aa6.07□□□□□ -1.44
VPS41-210ENST00000462429 RNASE1P07998 156 aaKnown RBP6.07□□□□□ -1.44
VPS41-210ENST00000462429 GP2P55259 537 aaKnown RBP6.07□□□□□ -1.44
VPS41-210ENST00000462429 NTRK3Q16288 839 aa6.07□□□□□ -1.44
VPS41-210ENST00000462429 DENND5AQ6IQ26 1287 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms