RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 PCDH11XQ9BZA7 1347 aa5.86□□□□□ -1.47
CSMD3-205ENST00000462254 PCDH11YQ9BZA8 1340 aa5.86□□□□□ -1.47
CSMD3-205ENST00000462254 FANCIQ9NVI1 1328 aa5.86□□□□□ -1.47
CSMD3-205ENST00000462254 RNMTO43148 476 aaKnown RBP5.86□□□□□ -1.47
CSMD3-205ENST00000462254 HTATSF1O43719 755 aaKnown RBP5.86□□□□□ -1.47
CSMD3-205ENST00000462254 ZNF853P0CG23 659 aa5.86□□□□□ -1.47
CSMD3-205ENST00000462254 BMP6P22004 513 aa5.86□□□□□ -1.47
CSMD3-205ENST00000462254 ETFBP38117 255 aa5.86□□□□□ -1.47
CSMD3-205ENST00000462254 PREPP48147 710 aa5.86□□□□□ -1.47
CSMD3-205ENST00000462254 NASPP49321 788 aaPredicted RBP5.86□□□□□ -1.47
CSMD3-205ENST00000462254 AP3B2Q13367 1082 aa5.86□□□□□ -1.47
CSMD3-205ENST00000462254 C1orf141Q5JVX7 400 aa5.86□□□□□ -1.47
CSMD3-205ENST00000462254 NKAPLQ5M9Q1 402 aa5.86□□□□□ -1.47
CSMD3-205ENST00000462254 KIAA0825Q8IV33 1275 aa5.86□□□□□ -1.47
CSMD3-205ENST00000462254 SULF2Q8IWU5 870 aa5.86□□□□□ -1.47
CSMD3-205ENST00000462254 GRIN3AQ8TCU5 1115 aa5.86□□□□□ -1.47
CSMD3-205ENST00000462254 SH3TC2Q8TF17 1288 aa5.86□□□□□ -1.47
CSMD3-205ENST00000462254 TSR2Q969E8 191 aaKnown RBP5.86□□□□□ -1.47
CSMD3-205ENST00000462254 FAM46AQ96IP4 442 aaKnown RBP5.86□□□□□ -1.47
CSMD3-205ENST00000462254 THRAP3Q9Y2W1 955 aaKnown RBP5.86□□□□□ -1.47
CSMD3-205ENST00000462254 TNS1Q9HBL0 1735 aaKnown RBP5.85□□□□□ -1.47
CSMD3-205ENST00000462254 PRC1O43663 620 aa5.85□□□□□ -1.47
CSMD3-205ENST00000462254 ZNF862O60290 1169 aa5.85□□□□□ -1.47
CSMD3-205ENST00000462254 TIAF1O95411 115 aa5.85□□□□□ -1.47
CSMD3-205ENST00000462254 GSTP1P09211 210 aaKnown RBP5.85□□□□□ -1.47
CSMD3-205ENST00000462254 NME2P22392 152 aa5.85□□□□□ -1.47
CSMD3-205ENST00000462254 ARNTP27540 789 aa5.85□□□□□ -1.47
CSMD3-205ENST00000462254 GYS2P54840 703 aa5.85□□□□□ -1.47
CSMD3-205ENST00000462254 RSPO4Q2I0M5 234 aaPredicted RBP5.85□□□□□ -1.47
CSMD3-205ENST00000462254 ODR4Q5SWX8 454 aa5.85□□□□□ -1.47
CSMD3-205ENST00000462254 ANKRD34AQ69YU3 496 aa5.85□□□□□ -1.47
CSMD3-205ENST00000462254 FDX2Q6P4F2 183 aa5.85□□□□□ -1.47
CSMD3-205ENST00000462254 HOMER1Q86YM7 354 aa5.85□□□□□ -1.47
CSMD3-205ENST00000462254 IFNL2Q8IZJ0 200 aa5.85□□□□□ -1.47
CSMD3-205ENST00000462254 ARMC10Q8N2F6 343 aa5.85□□□□□ -1.47
CSMD3-205ENST00000462254 C12orf50Q8NA57 414 aaPredicted RBP5.85□□□□□ -1.47
CSMD3-205ENST00000462254 PRPF38AQ8NAV1 312 aaKnown RBP5.85□□□□□ -1.47
CSMD3-205ENST00000462254 SMG8Q8ND04 991 aaKnown RBP5.85□□□□□ -1.47
CSMD3-205ENST00000462254 RTF1Q92541 710 aaKnown RBP5.85□□□□□ -1.47
CSMD3-205ENST00000462254 RELTQ969Z4 430 aa5.85□□□□□ -1.47
CSMD3-205ENST00000462254 C8orf48Q96LL4 319 aa5.85□□□□□ -1.47
CSMD3-205ENST00000462254 CEP41Q9BYV8 373 aa5.85□□□□□ -1.47
CSMD3-205ENST00000462254 CEP44Q9C0F1 390 aa5.85□□□□□ -1.47
CSMD3-205ENST00000462254 UBA5Q9GZZ9 404 aa5.85□□□□□ -1.47
CSMD3-205ENST00000462254 COPRSQ9NQ92 184 aa5.85□□□□□ -1.47
CSMD3-205ENST00000462254 MYH14Q7Z406 1995 aaKnown RBP5.85□□□□□ -1.47
CSMD3-205ENST00000462254 AFDNP55196 1824 aaKnown RBP5.85□□□□□ -1.47
CSMD3-205ENST00000462254 ZNF831Q5JPB2 1677 aa5.85□□□□□ -1.47
CSMD3-205ENST00000462254 KCPQ6ZWJ8 1503 aa5.84□□□□□ -1.47
CSMD3-205ENST00000462254 FAM221BA6H8Z2 402 aa5.84□□□□□ -1.47
CSMD3-205ENST00000462254 CHL1O00533 1208 aa5.84□□□□□ -1.47
CSMD3-205ENST00000462254 CREB3O43889 395 aa5.84□□□□□ -1.47
CSMD3-205ENST00000462254 EIF4EBP3O60516 100 aaPredicted RBP5.84□□□□□ -1.47
CSMD3-205ENST00000462254 LIG1P18858 919 aa5.84□□□□□ -1.47
CSMD3-205ENST00000462254 SOX9P48436 509 aa5.84□□□□□ -1.47
CSMD3-205ENST00000462254 GNAI1P63096 354 aa5.84□□□□□ -1.47
CSMD3-205ENST00000462254 ZNF252P-AS1Q0IIN9 211 aa5.84□□□□□ -1.47
CSMD3-205ENST00000462254 COL9A2Q14055 689 aaPredicted RBP5.84□□□□□ -1.47
CSMD3-205ENST00000462254 PDE3AQ14432 1141 aa5.84□□□□□ -1.47
CSMD3-205ENST00000462254 CCDC85BQ15834 202 aaPredicted RBP5.84□□□□□ -1.47
CSMD3-205ENST00000462254 MAP1SQ66K74 1059 aaPredicted RBP5.84□□□□□ -1.47
CSMD3-205ENST00000462254 RSRP1Q9BUV0 290 aa5.84□□□□□ -1.47
CSMD3-205ENST00000462254 WDR18Q9BV38 432 aa5.84□□□□□ -1.47
CSMD3-205ENST00000462254 NOC4LQ9BVI4 516 aaKnown RBP5.84□□□□□ -1.47
CSMD3-205ENST00000462254 SUGCTQ9HAC7 445 aa5.84□□□□□ -1.47
CSMD3-205ENST00000462254 CBX8Q9HC52 389 aa5.84□□□□□ -1.47
CSMD3-205ENST00000462254 CYP4F12Q9HCS2 524 aa5.84□□□□□ -1.47
CSMD3-205ENST00000462254 KBTBD4Q9NVX7 518 aa5.84□□□□□ -1.47
CSMD3-205ENST00000462254 TRPC5Q9UL62 973 aaPredicted RBP5.84□□□□□ -1.47
CSMD3-205ENST00000462254 LAS1LQ9Y4W2 734 aaKnown RBP5.84□□□□□ -1.47
CSMD3-205ENST00000462254 ARFGEF2Q9Y6D5 1785 aa5.84□□□□□ -1.47
CSMD3-205ENST00000462254 RREB1Q92766 1687 aa5.84□□□□□ -1.47
CSMD3-205ENST00000462254 ANKRD36CQ5JPF3 1778 aa5.83□□□□□ -1.48
CSMD3-205ENST00000462254 CASZ1Q86V15 1759 aa5.83□□□□□ -1.48
CSMD3-205ENST00000462254 NUP188Q5SRE5 1749 aa5.83□□□□□ -1.48
CSMD3-205ENST00000462254 HMGB1P1B2RPK0 211 aaPredicted RBP5.83□□□□□ -1.48
CSMD3-205ENST00000462254 EXOC5O00471 708 aa5.83□□□□□ -1.48
CSMD3-205ENST00000462254 AOC2O75106 756 aa5.83□□□□□ -1.48
CSMD3-205ENST00000462254 VIL1P09327 827 aaKnown RBP5.83□□□□□ -1.48
CSMD3-205ENST00000462254 ADH5P11766 374 aa5.83□□□□□ -1.48
CSMD3-205ENST00000462254 RHBDL3P58872 404 aa5.83□□□□□ -1.48
CSMD3-205ENST00000462254 CALD1Q05682 793 aaKnown RBP5.83□□□□□ -1.48
CSMD3-205ENST00000462254 EXOSC9Q06265 439 aaKnown RBP5.83□□□□□ -1.48
CSMD3-205ENST00000462254 SOX4Q06945 474 aaPredicted RBP5.83□□□□□ -1.48
CSMD3-205ENST00000462254 PWP1Q13610 501 aa5.83□□□□□ -1.48
CSMD3-205ENST00000462254 DDB1Q16531 1140 aa5.83□□□□□ -1.48
CSMD3-205ENST00000462254 MAP3K11Q16584 847 aa5.83□□□□□ -1.48
CSMD3-205ENST00000462254 KRT24Q2M2I5 525 aa5.83□□□□□ -1.48
CSMD3-205ENST00000462254 PCNX4Q63HM2 1172 aa5.83□□□□□ -1.48
CSMD3-205ENST00000462254 SV2BQ7L1I2 683 aa5.83□□□□□ -1.48
CSMD3-205ENST00000462254 APBB1IPQ7Z5R6 666 aaPredicted RBP5.83□□□□□ -1.48
CSMD3-205ENST00000462254 FERMT3Q86UX7 667 aa5.83□□□□□ -1.48
CSMD3-205ENST00000462254 C2CD4AQ8NCU7 369 aaPredicted RBP5.83□□□□□ -1.48
CSMD3-205ENST00000462254 HNRNPLLQ8WVV9 542 aaKnown RBP5.83□□□□□ -1.48
CSMD3-205ENST00000462254 UTP4Q969X6 686 aaKnown RBP5.83□□□□□ -1.48
CSMD3-205ENST00000462254 CEP89Q96ST8 783 aa5.83□□□□□ -1.48
CSMD3-205ENST00000462254 FEZ1Q99689 392 aa5.83□□□□□ -1.48
CSMD3-205ENST00000462254 IER2Q9BTL4 223 aa5.83□□□□□ -1.48
CSMD3-205ENST00000462254 CCDC113Q9H0I3 377 aa5.83□□□□□ -1.48
CSMD3-205ENST00000462254 KANSL2Q9H9L4 492 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms