RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 ALG1Q9BT22 464 aa11.74□□□□□ -0.53
UPF2-204ENST00000460569 CFHR5Q9BXR6 569 aa11.74□□□□□ -0.53
UPF2-204ENST00000460569 MOV10L1Q9BXT6 1211 aaKnown RBP11.74□□□□□ -0.53
UPF2-204ENST00000460569 CWC22Q9HCG8 908 aaKnown RBP11.74□□□□□ -0.53
UPF2-204ENST00000460569 RNF146Q9NTX7 359 aa11.74□□□□□ -0.53
UPF2-204ENST00000460569 KIF3AQ9Y496 699 aa11.74□□□□□ -0.53
UPF2-204ENST00000460569 PCDHA1Q9Y5I3 950 aa11.74□□□□□ -0.53
UPF2-204ENST00000460569 STXBP3O00186 592 aa11.73□□□□□ -0.53
UPF2-204ENST00000460569 ECM2O94769 699 aaPredicted RBP11.73□□□□□ -0.53
UPF2-204ENST00000460569 SLC25A27O95847 323 aa11.73□□□□□ -0.53
UPF2-204ENST00000460569 FDPSP14324 419 aaKnown RBP11.73□□□□□ -0.53
UPF2-204ENST00000460569 NAPAP54920 295 aa11.73□□□□□ -0.53
UPF2-204ENST00000460569 Q3C1V9 767 aa11.73□□□□□ -0.53
UPF2-204ENST00000460569 TKFCQ3LXA3 575 aa11.73□□□□□ -0.53
UPF2-204ENST00000460569 PPP1R18Q6NYC8 613 aa11.73□□□□□ -0.53
UPF2-204ENST00000460569 NCAPG2Q86XI2 1143 aa11.73□□□□□ -0.53
UPF2-204ENST00000460569 SPRYD3Q8NCJ5 442 aa11.73□□□□□ -0.53
UPF2-204ENST00000460569 TRERF1Q96PN7 1200 aa11.73□□□□□ -0.53
UPF2-204ENST00000460569 PORCNQ9H237 461 aa11.73□□□□□ -0.53
UPF2-204ENST00000460569 BARHL2Q9NY43 387 aa11.73□□□□□ -0.53
UPF2-204ENST00000460569 VPS54Q9P1Q0 977 aa11.73□□□□□ -0.53
UPF2-204ENST00000460569 TSKSQ9UJT2 592 aa11.73□□□□□ -0.53
UPF2-204ENST00000460569 MRPL11Q9Y3B7 192 aaKnown RBP11.73□□□□□ -0.53
UPF2-204ENST00000460569 RIPK3Q9Y572 518 aa11.73□□□□□ -0.53
UPF2-204ENST00000460569 ZNF236Q9UL36 1845 aa11.72□□□□□ -0.53
UPF2-204ENST00000460569 XBP1P17861 261 aa11.72□□□□□ -0.53
UPF2-204ENST00000460569 ERCC3P19447 782 aa11.72□□□□□ -0.53
UPF2-204ENST00000460569 MUM1L1Q5H9M0 696 aa11.72□□□□□ -0.53
UPF2-204ENST00000460569 SHCBP1Q8NEM2 672 aa11.72□□□□□ -0.53
UPF2-204ENST00000460569 CHST13Q8NET6 341 aa11.72□□□□□ -0.53
UPF2-204ENST00000460569 CCDC148Q8NFR7 591 aa11.72□□□□□ -0.53
UPF2-204ENST00000460569 CCDC12Q8WUD4 166 aaPredicted RBP11.72□□□□□ -0.53
UPF2-204ENST00000460569 MROH8Q9H579 483 aa11.72□□□□□ -0.53
UPF2-204ENST00000460569 ACAD9Q9H845 621 aa11.72□□□□□ -0.53
UPF2-204ENST00000460569 EFCC1Q9HA90 598 aa11.72□□□□□ -0.53
UPF2-204ENST00000460569 WBP1LQ9NX94 342 aa11.72□□□□□ -0.53
UPF2-204ENST00000460569 DAXXQ9UER7 740 aaPredicted RBP11.72□□□□□ -0.53
UPF2-204ENST00000460569 LCTP09848 1927 aa11.72□□□□□ -0.53
UPF2-204ENST00000460569 ZNFX1Q9P2E3 1918 aaKnown RBP11.71□□□□□ -0.53
UPF2-204ENST00000460569 GPR25O00155 361 aa11.71□□□□□ -0.53
UPF2-204ENST00000460569 NFIBO00712 420 aa11.71□□□□□ -0.53
UPF2-204ENST00000460569 MAPK4P31152 587 aa11.71□□□□□ -0.53
UPF2-204ENST00000460569 TRIM29Q14134 588 aa11.71□□□□□ -0.53
UPF2-204ENST00000460569 TYW1BQ6NUM6 668 aa11.71□□□□□ -0.53
UPF2-204ENST00000460569 JMYQ8N9B5 988 aa11.71□□□□□ -0.53
UPF2-204ENST00000460569 C8orf76Q96K31 380 aa11.71□□□□□ -0.53
UPF2-204ENST00000460569 SH3GLB2Q9NR46 395 aa11.71□□□□□ -0.53
UPF2-204ENST00000460569 FBXO40Q9UH90 709 aa11.71□□□□□ -0.53
UPF2-204ENST00000460569 IVNS1ABPQ9Y6Y0 642 aa11.71□□□□□ -0.53
UPF2-204ENST00000460569 PLXNA1Q9UIW2 1896 aa11.71□□□□□ -0.53
UPF2-204ENST00000460569 SMCO2A6NFE2 343 aa11.7□□□□□ -0.54
UPF2-204ENST00000460569 CFBP00751 764 aa11.7□□□□□ -0.54
UPF2-204ENST00000460569 ADCY7P51828 1080 aa11.7□□□□□ -0.54
UPF2-204ENST00000460569 NLRP5P59047 1200 aa11.7□□□□□ -0.54
UPF2-204ENST00000460569 LACTBP83111 547 aaPredicted RBP11.7□□□□□ -0.54
UPF2-204ENST00000460569 SP3Q02447 781 aa11.7□□□□□ -0.54
UPF2-204ENST00000460569 KIF22Q14807 665 aa11.7□□□□□ -0.54
UPF2-204ENST00000460569 NSMFQ6X4W1 530 aa11.7□□□□□ -0.54
UPF2-204ENST00000460569 GPR142Q7Z601 462 aa11.7□□□□□ -0.54
UPF2-204ENST00000460569 PLEKHH3Q7Z736 793 aa11.7□□□□□ -0.54
UPF2-204ENST00000460569 MCF2L2Q86YR7 1114 aa11.7□□□□□ -0.54
UPF2-204ENST00000460569 CLEC4DQ8WXI8 215 aa11.7□□□□□ -0.54
UPF2-204ENST00000460569 CUL5Q93034 780 aa11.7□□□□□ -0.54
UPF2-204ENST00000460569 SHISA4Q96DD7 197 aa11.7□□□□□ -0.54
UPF2-204ENST00000460569 MMP19Q99542 508 aa11.7□□□□□ -0.54
UPF2-204ENST00000460569 GJB4Q9NTQ9 266 aa11.7□□□□□ -0.54
UPF2-204ENST00000460569 KCNJ14Q9UNX9 436 aa11.7□□□□□ -0.54
UPF2-204ENST00000460569 PFASO15067 1338 aa11.69□□□□□ -0.54
UPF2-204ENST00000460569 ESYT2A0FGR8 921 aa11.69□□□□□ -0.54
UPF2-204ENST00000460569 TNPO2O14787 897 aaKnown RBP11.69□□□□□ -0.54
UPF2-204ENST00000460569 OPLAHO14841 1288 aa11.69□□□□□ -0.54
UPF2-204ENST00000460569 FKTNO75072 461 aa11.69□□□□□ -0.54
UPF2-204ENST00000460569 FCER1AP12319 257 aa11.69□□□□□ -0.54
UPF2-204ENST00000460569 CALML3P27482 149 aa11.69□□□□□ -0.54
UPF2-204ENST00000460569 FCGRTP55899 365 aa11.69□□□□□ -0.54
UPF2-204ENST00000460569 GUCY1B3Q02153 619 aa11.69□□□□□ -0.54
UPF2-204ENST00000460569 KCTD2Q14681 263 aa11.69□□□□□ -0.54
UPF2-204ENST00000460569 UBE2SQ16763 222 aa11.69□□□□□ -0.54
UPF2-204ENST00000460569 KRT40Q6A162 431 aa11.69□□□□□ -0.54
UPF2-204ENST00000460569 SLC30A10Q6XR72 485 aa11.69□□□□□ -0.54
UPF2-204ENST00000460569 RNF207Q6ZRF8 634 aa11.69□□□□□ -0.54
UPF2-204ENST00000460569 FAM177A1Q8N128 213 aaPredicted RBP11.69□□□□□ -0.54
UPF2-204ENST00000460569 ANKRD35Q8N283 1001 aa11.69□□□□□ -0.54
UPF2-204ENST00000460569 ARHGAP39Q9C0H5 1083 aa11.69□□□□□ -0.54
UPF2-204ENST00000460569 PSTPIP2Q9H939 334 aa11.69□□□□□ -0.54
UPF2-204ENST00000460569 C6orf50Q9HD87 102 aa11.69□□□□□ -0.54
UPF2-204ENST00000460569 A1CFQ9NQ94 594 aaKnown RBP11.69□□□□□ -0.54
UPF2-204ENST00000460569 DOCK3Q8IZD9 2030 aa11.69□□□□□ -0.54
UPF2-204ENST00000460569 H3BQV1 296 aa11.68□□□□□ -0.54
UPF2-204ENST00000460569 GCOM1H8Y6P7 765 aaPredicted RBP11.68□□□□□ -0.54
UPF2-204ENST00000460569 POLR2MP0CAP2 368 aa11.68□□□□□ -0.54
UPF2-204ENST00000460569 HSPA1AP0DMV8 641 aaKnown RBP11.68□□□□□ -0.54
UPF2-204ENST00000460569 HSPA1BP0DMV9 641 aaKnown RBP11.68□□□□□ -0.54
UPF2-204ENST00000460569 PDCP20941 246 aa11.68□□□□□ -0.54
UPF2-204ENST00000460569 GNA11P29992 359 aa11.68□□□□□ -0.54
UPF2-204ENST00000460569 PSMC4P43686 418 aa11.68□□□□□ -0.54
UPF2-204ENST00000460569 MRPL12P52815 198 aaKnown RBP11.68□□□□□ -0.54
UPF2-204ENST00000460569 NOM1Q5C9Z4 860 aaKnown RBP11.68□□□□□ -0.54
UPF2-204ENST00000460569 IFFO2Q5TF58 517 aa11.68□□□□□ -0.54
UPF2-204ENST00000460569 LARP1BQ659C4 914 aaKnown RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms