RNA–Protein interactions for RNA: ENST00000458530.1

VPS50-207, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 667 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-207ENST00000458530 POLR3EQ9NVU0 708 aa10.27□□□□□ -0.77
VPS50-207ENST00000458530 NOL7Q9UMY1 257 aaKnown RBP10.27□□□□□ -0.77
VPS50-207ENST00000458530 CEP131Q9UPN4 1083 aa10.27□□□□□ -0.77
VPS50-207ENST00000458530 COL6A3P12111 3177 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 DTNBO60941 627 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 USP2O75604 605 aaPredicted RBP10.26□□□□□ -0.77
VPS50-207ENST00000458530 BMP15O95972 392 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 ASNSP08243 561 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 SNHG28P0DPA3 235 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 NLRP5P59047 1200 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 FOXK1P85037 733 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 ZNF543Q08ER8 600 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 TRAF1Q13077 416 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 RASA3Q14644 834 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 STK38Q15208 465 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 SF3A1Q15459 793 aaKnown RBP10.26□□□□□ -0.77
VPS50-207ENST00000458530 RILPL1Q5EBL4 403 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 NOSTRINQ8IVI9 506 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 DIS3L2Q8IYB7 885 aaKnown RBP10.26□□□□□ -0.77
VPS50-207ENST00000458530 CMTR1Q8N1G2 835 aaKnown RBP10.26□□□□□ -0.77
VPS50-207ENST00000458530 LRRC47Q8N1G4 583 aaKnown RBP10.26□□□□□ -0.77
VPS50-207ENST00000458530 GMCL1P1Q8NEA9 526 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 LEO1Q8WVC0 666 aaPredicted RBP10.26□□□□□ -0.77
VPS50-207ENST00000458530 AIFM3Q96NN9 605 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 PHF20Q9BVI0 1012 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 TMEM39BQ9GZU3 492 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 GOPCQ9HD26 462 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 RYDENQ9NUL5 291 aaKnown RBP10.26□□□□□ -0.77
VPS50-207ENST00000458530 RTEL1Q9NZ71 1219 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 MTMR7Q9Y216 660 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 PTCH2Q9Y6C5 1203 aa10.26□□□□□ -0.77
VPS50-207ENST00000458530 FAM196BA6NMK8 535 aa10.25□□□□□ -0.77
VPS50-207ENST00000458530 DLL1O00548 723 aa10.25□□□□□ -0.77
VPS50-207ENST00000458530 PPP1R12BO60237 982 aaPredicted RBP10.25□□□□□ -0.77
VPS50-207ENST00000458530 LETM1O95202 739 aaPredicted RBP10.25□□□□□ -0.77
VPS50-207ENST00000458530 GDF11O95390 407 aa10.25□□□□□ -0.77
VPS50-207ENST00000458530 GH2P01242 217 aa10.25□□□□□ -0.77
VPS50-207ENST00000458530 EEF2P13639 858 aaKnown RBP10.25□□□□□ -0.77
VPS50-207ENST00000458530 GUCY1A2P33402 732 aa10.25□□□□□ -0.77
VPS50-207ENST00000458530 MAP3K10Q02779 954 aa10.25□□□□□ -0.77
VPS50-207ENST00000458530 SEPT2Q15019 361 aa10.25□□□□□ -0.77
VPS50-207ENST00000458530 PKN1Q16512 942 aa10.25□□□□□ -0.77
VPS50-207ENST00000458530 OTUD7BQ6GQQ9 843 aa10.25□□□□□ -0.77
VPS50-207ENST00000458530 PPP1R18Q6NYC8 613 aa10.25□□□□□ -0.77
VPS50-207ENST00000458530 BICD2Q8TD16 824 aa10.25□□□□□ -0.77
VPS50-207ENST00000458530 SHISA4Q96DD7 197 aa10.25□□□□□ -0.77
VPS50-207ENST00000458530 GLT8D2Q9H1C3 349 aa10.25□□□□□ -0.77
VPS50-207ENST00000458530 GDPD2Q9HCC8 539 aa10.25□□□□□ -0.77
VPS50-207ENST00000458530 VPS54Q9P1Q0 977 aa10.25□□□□□ -0.77
VPS50-207ENST00000458530 ZBTB21Q9ULJ3 1066 aa10.25□□□□□ -0.77
VPS50-207ENST00000458530 OTOFQ9HC10 1997 aa10.25□□□□□ -0.77
VPS50-207ENST00000458530 USP17L5A8MUK1 530 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 GNA11P29992 359 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 CAP2P40123 477 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 SLC1A4P43007 532 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 TRAPPC10P48553 1259 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 NASPP49321 788 aaPredicted RBP10.24□□□□□ -0.77
VPS50-207ENST00000458530 SUPT20HL1Q3ZLR7 823 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 SLC9C1Q4G0N8 1177 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 NBPF12Q5TAG4 269 aaPredicted RBP10.24□□□□□ -0.77
VPS50-207ENST00000458530 ANO1Q5XXA6 986 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 SLFN13Q68D06 897 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 CAVIN1Q6NZI2 390 aaKnown RBP10.24□□□□□ -0.77
VPS50-207ENST00000458530 USP17L2Q6R6M4 530 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 HEATR3Q7Z4Q2 680 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 ANKRD13AQ8IZ07 590 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 STAG2Q8N3U4 1231 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 DAGLBQ8NCG7 672 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 BRI3BPQ8WY22 251 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 GMCL1Q96IK5 515 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 ZNF341Q9BYN7 854 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 RIOX1Q9H6W3 641 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 C6orf50Q9HD87 102 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 BARHL2Q9NY43 387 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 TFIP11Q9UBB9 837 aaKnown RBP10.24□□□□□ -0.77
VPS50-207ENST00000458530 RCOR1Q9UKL0 485 aa10.24□□□□□ -0.77
VPS50-207ENST00000458530 ESYT2A0FGR8 921 aa10.23□□□□□ -0.77
VPS50-207ENST00000458530 KIF28PB7ZC32 967 aa10.23□□□□□ -0.77
VPS50-207ENST00000458530 SPTLC2O15270 562 aa10.23□□□□□ -0.77
VPS50-207ENST00000458530 RAD21O60216 631 aa10.23□□□□□ -0.77
VPS50-207ENST00000458530 CTNND1O60716 968 aaKnown RBP10.23□□□□□ -0.77
VPS50-207ENST00000458530 GOLGA8HP0CJ92 632 aa10.23□□□□□ -0.77
VPS50-207ENST00000458530 ME1P48163 572 aa10.23□□□□□ -0.77
VPS50-207ENST00000458530 IREB2P48200 963 aaKnown RBP10.23□□□□□ -0.77
VPS50-207ENST00000458530 NAPAP54920 295 aa10.23□□□□□ -0.77
VPS50-207ENST00000458530 CCDC183Q5T5S1 534 aa10.23□□□□□ -0.77
VPS50-207ENST00000458530 FAM173BQ6P4H8 233 aa10.23□□□□□ -0.77
VPS50-207ENST00000458530 CCDC73Q6ZRK6 1079 aa10.23□□□□□ -0.77
VPS50-207ENST00000458530 TEX2Q8IWB9 1127 aa10.23□□□□□ -0.77
VPS50-207ENST00000458530 GPT2Q8TD30 523 aa10.23□□□□□ -0.77
VPS50-207ENST00000458530 USP28Q96RU2 1077 aa10.23□□□□□ -0.77
VPS50-207ENST00000458530 DDX19AQ9NUU7 478 aaKnown RBP10.23□□□□□ -0.77
VPS50-207ENST00000458530 PCDHA4Q9UN74 947 aa10.23□□□□□ -0.77
VPS50-207ENST00000458530 KCNJ14Q9UNX9 436 aa10.23□□□□□ -0.77
VPS50-207ENST00000458530 LHX6Q9UPM6 363 aa10.23□□□□□ -0.77
VPS50-207ENST00000458530 MORC2Q9Y6X9 1032 aaPredicted RBP10.23□□□□□ -0.77
VPS50-207ENST00000458530 FRMPD2Q68DX3 1309 aaPredicted RBP10.23□□□□□ -0.77
VPS50-207ENST00000458530 PNMA6FA0A0J9YX94 578 aa10.22□□□□□ -0.77
VPS50-207ENST00000458530 CCDC194A0A1B0GVG4 234 aa10.22□□□□□ -0.77
VPS50-207ENST00000458530 A0A1W2PPC1 479 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms