RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 ZNF543Q08ER8 600 aa16.95■□□□□ 0.3
LDLR-202ENST00000455727 CDC42EP5Q6NZY7 148 aa16.95■□□□□ 0.3
LDLR-202ENST00000455727 CCDC47Q96A33 483 aaKnown RBP16.95■□□□□ 0.3
LDLR-202ENST00000455727 DHTKD1Q96HY7 919 aaPredicted RBP16.95■□□□□ 0.3
LDLR-202ENST00000455727 MTMR9Q96QG7 549 aa16.95■□□□□ 0.3
LDLR-202ENST00000455727 THAP9Q9H5L6 903 aa16.95■□□□□ 0.3
LDLR-202ENST00000455727 BIN2Q9UBW5 565 aaPredicted RBP16.95■□□□□ 0.3
LDLR-202ENST00000455727 FRMPD2Q68DX3 1309 aaPredicted RBP16.94■□□□□ 0.3
LDLR-202ENST00000455727 PNMA6FA0A0J9YX94 578 aa16.94■□□□□ 0.3
LDLR-202ENST00000455727 HLA-DOAP06340 250 aa16.94■□□□□ 0.3
LDLR-202ENST00000455727 EEF1GP26641 437 aaKnown RBP16.94■□□□□ 0.3
LDLR-202ENST00000455727 CCT6AP40227 531 aaKnown RBP16.94■□□□□ 0.3
LDLR-202ENST00000455727 AMPD3Q01432 767 aa16.94■□□□□ 0.3
LDLR-202ENST00000455727 GPATCH4Q5T3I0 446 aaKnown RBP16.94■□□□□ 0.3
LDLR-202ENST00000455727 APOBEC3HQ6NTF7 200 aaKnown RBP16.94■□□□□ 0.3
LDLR-202ENST00000455727 PODNQ7Z5L7 613 aa16.94■□□□□ 0.3
LDLR-202ENST00000455727 IRF2BP1Q8IU81 584 aa16.94■□□□□ 0.3
LDLR-202ENST00000455727 LRRC47Q8N1G4 583 aaKnown RBP16.94■□□□□ 0.3
LDLR-202ENST00000455727 LRRC15Q8TF66 581 aa16.94■□□□□ 0.3
LDLR-202ENST00000455727 NOC3LQ8WTT2 800 aaKnown RBP16.94■□□□□ 0.3
LDLR-202ENST00000455727 ZMYND15Q9H091 742 aa16.94■□□□□ 0.3
LDLR-202ENST00000455727 CASP14P31944 242 aa16.93■□□□□ 0.3
LDLR-202ENST00000455727 FXR2P51116 673 aaKnown RBP eCLIP16.93■□□□□ 0.31e-6■□□□□ 10.3
LDLR-202ENST00000455727 DOK7Q18PE1 504 aa16.93■□□□□ 0.3
LDLR-202ENST00000455727 JAKMIP3Q5VZ66 844 aa16.93■□□□□ 0.3
LDLR-202ENST00000455727 ZNF397Q8NF99 534 aaPredicted RBP16.93■□□□□ 0.3
LDLR-202ENST00000455727 CCDC17Q96LX7 622 aa16.93■□□□□ 0.3
LDLR-202ENST00000455727 TRIM9Q9C026 710 aa16.93■□□□□ 0.3
LDLR-202ENST00000455727 FANCGO15287 622 aa16.93■□□□□ 0.3
LDLR-202ENST00000455727 TECP42680 631 aa16.93■□□□□ 0.3
LDLR-202ENST00000455727 FKBP1AP62942 108 aaKnown RBP16.93■□□□□ 0.3
LDLR-202ENST00000455727 COBLL1Q53SF7 1204 aa16.93■□□□□ 0.3
LDLR-202ENST00000455727 CALML4Q96GE6 196 aa16.93■□□□□ 0.3
LDLR-202ENST00000455727 VPS16Q9H269 839 aa16.93■□□□□ 0.3
LDLR-202ENST00000455727 JMJD4Q9H9V9 463 aa16.93■□□□□ 0.3
LDLR-202ENST00000455727 RIC8AQ9NPQ8 531 aa16.93■□□□□ 0.3
LDLR-202ENST00000455727 MAPK8IP1Q9UQF2 711 aa16.93■□□□□ 0.3
LDLR-202ENST00000455727 ADGRG1Q9Y653 693 aa16.93■□□□□ 0.3
LDLR-202ENST00000455727 PARP3Q9Y6F1 533 aa16.93■□□□□ 0.3
LDLR-202ENST00000455727 SOWAHDA6NJG2 315 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 COBLO75128 1261 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 FXR1P51114 621 aaKnown RBP eCLIP16.92■□□□□ 0.3
LDLR-202ENST00000455727 PDIA5Q14554 519 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 TMTC1Q8IUR5 882 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 CPLX3Q8WVH0 158 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 COA7Q96BR5 231 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 ZDHHC15Q96MV8 337 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 PLIN2Q99541 437 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 MMTAG2Q9BU76 263 aaKnown RBP16.92■□□□□ 0.3
LDLR-202ENST00000455727 TMEM260Q9NX78 707 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 ADAMTSL1Q8N6G6 1762 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 G3V3G9 751 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 CASQ1P31415 396 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 SCNN1DP51172 638 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 GNG11P61952 73 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 CALCRLQ16602 461 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 DCAF8Q5TAQ9 597 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 TTI2Q6NXR4 508 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 RAD9BQ6WBX8 426 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 POTEDQ86YR6 584 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 ADGRF4Q8IZF3 695 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 MTMR8Q96EF0 704 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 MXD3Q9BW11 206 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 GPCPD1Q9NPB8 672 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 TAB2Q9NYJ8 693 aa16.92■□□□□ 0.3
LDLR-202ENST00000455727 A0A1W2PQC6 194 aa16.91■□□□□ 0.3
LDLR-202ENST00000455727 MTF1Q14872 753 aa16.91■□□□□ 0.3
LDLR-202ENST00000455727 ELF2Q15723 593 aa16.91■□□□□ 0.3
LDLR-202ENST00000455727 RAB34Q9BZG1 259 aa16.91■□□□□ 0.3
LDLR-202ENST00000455727 STK17AQ9UEE5 414 aa16.91■□□□□ 0.3
LDLR-202ENST00000455727 BICDL2A1A5D9 508 aa16.91■□□□□ 0.3
LDLR-202ENST00000455727 URI1O94763 535 aaPredicted RBP16.91■□□□□ 0.3
LDLR-202ENST00000455727 CLK2P49760 499 aaKnown RBP16.91■□□□□ 0.3
LDLR-202ENST00000455727 PMS1P54277 932 aaKnown RBP16.91■□□□□ 0.3
LDLR-202ENST00000455727 MAP3K9P80192 1104 aa16.91■□□□□ 0.3
LDLR-202ENST00000455727 HDLBPQ00341 1268 aaKnown RBP16.91■□□□□ 0.3
LDLR-202ENST00000455727 TMEM266Q2M3C6 531 aa16.91■□□□□ 0.3
LDLR-202ENST00000455727 PPP4R3AQ6IN85 833 aa16.91■□□□□ 0.3
LDLR-202ENST00000455727 DESI2Q9BSY9 194 aa16.91■□□□□ 0.3
LDLR-202ENST00000455727 DHX36Q9H2U1 1008 aaKnown RBP16.91■□□□□ 0.3
LDLR-202ENST00000455727 ABHD10Q9NUJ1 306 aa16.91■□□□□ 0.3
LDLR-202ENST00000455727 TRIM49BA6NDI0 452 aa16.9■□□□□ 0.3
LDLR-202ENST00000455727 LGALS16A8MUM7 142 aa16.9■□□□□ 0.3
LDLR-202ENST00000455727 EDIL3O43854 480 aa16.9■□□□□ 0.3
LDLR-202ENST00000455727 MMP10P09238 476 aa16.9■□□□□ 0.3
LDLR-202ENST00000455727 HOXA7P31268 230 aaPredicted RBP16.9■□□□□ 0.3
LDLR-202ENST00000455727 TXKP42681 527 aa16.9■□□□□ 0.3
LDLR-202ENST00000455727 CRKP46108 304 aa16.9■□□□□ 0.3
LDLR-202ENST00000455727 EIF6P56537 245 aaKnown RBP16.9■□□□□ 0.3
LDLR-202ENST00000455727 WDR24Q96S15 920 aa16.9■□□□□ 0.3
LDLR-202ENST00000455727 EXOC1Q9NV70 894 aa16.9■□□□□ 0.3
LDLR-202ENST00000455727 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.9■□□□□ 0.3
LDLR-202ENST00000455727 V9GYY5 206 aaPredicted RBP16.9■□□□□ 0.3
LDLR-202ENST00000455727 NPM3O75607 178 aaKnown RBP16.9■□□□□ 0.3
LDLR-202ENST00000455727 CCNE1P24864 410 aa16.9■□□□□ 0.3
LDLR-202ENST00000455727 MRPL12P52815 198 aaKnown RBP16.9■□□□□ 0.3
LDLR-202ENST00000455727 UBXN1Q04323 297 aa16.9■□□□□ 0.3
LDLR-202ENST00000455727 PDE4DQ08499 809 aa16.9■□□□□ 0.3
LDLR-202ENST00000455727 MB21D1Q8N884 522 aa16.9■□□□□ 0.3
LDLR-202ENST00000455727 ZNF507Q8TCN5 953 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms