RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 TMCO3Q6UWJ1 677 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 HHIPL2Q6UWX4 724 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 RABGAP1Q9Y3P9 1069 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 F5H6K3 240 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 RPN1P04843 607 aaKnown RBP8.23□□□□□ -1.09
SYNE1-213ENST00000448038 KLRC3Q07444 240 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 SPP2Q13103 211 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 TRPC3Q13507 836 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 PFKFB3Q16875 520 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-213ENST00000448038 RCSD1Q6JBY9 416 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 SEPT14Q6ZU15 432 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 TRIML1Q8N9V2 468 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 IWS1Q96ST2 819 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 PLVAPQ9BX97 442 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 KNDC1Q76NI1 1749 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 USP17L10C9JJH3 530 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 PSMD14O00487 310 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 GRM4Q14833 912 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 MAP9Q49MG5 647 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 CDC42EP5Q6NZY7 148 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 SGMS1Q86VZ5 419 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 FAM178BQ8IXR5 827 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 RDH13Q8NBN7 331 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 CRACR2AQ9BSW2 395 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 LZTFL1Q9NQ48 299 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 LARSQ9P2J5 1176 aaKnown RBP8.23□□□□□ -1.09
SYNE1-213ENST00000448038 GUCA1BQ9UMX6 200 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 PAXBP1Q9Y5B6 917 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 COL4A3BPQ9Y5P4 624 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 STK36Q9NRP7 1315 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 MCM3P25205 808 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 TAF3Q5VWG9 929 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 CCDC102AQ96A19 550 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 SLC4A9Q96Q91 983 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 ANO3Q9BYT9 981 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 WDR11Q9BZH6 1224 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 ABT1Q9ULW3 272 aaKnown RBP8.23□□□□□ -1.09
SYNE1-213ENST00000448038 M0QZ92 97 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 SBK1Q52WX2 424 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 C2orf69Q8N8R5 385 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 LARP4BQ92615 738 aaKnown RBP8.22□□□□□ -1.09
SYNE1-213ENST00000448038 SLF1Q9BQI6 1058 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 SUGCTQ9HAC7 445 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 SLC39A2Q9NP94 309 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 GSTTP1A0A1W2PQM5 241 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 CDC25AP30304 524 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 RASA3Q14644 834 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 FAM47CQ5HY64 1035 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 FAM26FQ5R3K3 315 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 LMBR1Q8WVP7 490 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 NUP58Q9BVL2 599 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 POLLQ9UGP5 575 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 PCDHA5Q9Y5H7 936 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 CCND2P30279 289 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 CASP7P55210 303 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 HLTFQ14527 1009 aaKnown RBP eCLIP8.22□□□□□ -1.09
SYNE1-213ENST00000448038 VWA3BQ502W6 1294 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 CUEDC2Q9H467 287 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 MAGEF1Q9HAY2 307 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 NRBP2Q9NSY0 501 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 FEM1BQ9UK73 627 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 TMEM110-MUSTN1A8MSY1 372 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 K7ENM7 598 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 SRGNP10124 158 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 EIF2AK2P19525 551 aaKnown RBP8.22□□□□□ -1.09
SYNE1-213ENST00000448038 PRPHP41219 470 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 MAP3K9P80192 1104 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 EXOSC10Q01780 885 aaKnown RBP8.22□□□□□ -1.09
SYNE1-213ENST00000448038 HS1BP3Q53T59 392 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 FAM160B1Q5W0V3 765 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 CCDC125Q86Z20 511 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 ALDH8A1Q9H2A2 487 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-213ENST00000448038 CYP2J2P51589 502 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 POLGP54098 1239 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-213ENST00000448038 MSANTD4Q8NCY6 345 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 CDHR1Q96JP9 859 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 PNMA3Q9UL41 463 aa8.22□□□□□ -1.09
SYNE1-213ENST00000448038 SRPRBQ9Y5M8 271 aaKnown RBP8.22□□□□□ -1.09
SYNE1-213ENST00000448038 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.22□□□□□ -1.09
SYNE1-213ENST00000448038 MORC3Q14149 939 aa8.21□□□□□ -1.09
SYNE1-213ENST00000448038 RNF207Q6ZRF8 634 aa8.21□□□□□ -1.09
SYNE1-213ENST00000448038 KIFAP3Q92845 792 aa8.21□□□□□ -1.09
SYNE1-213ENST00000448038 ATP6V0A1Q93050 837 aa8.21□□□□□ -1.09
SYNE1-213ENST00000448038 SELENOOQ9BVL4 669 aa8.21□□□□□ -1.09
SYNE1-213ENST00000448038 EPB41L4AQ9HCS5 686 aaPredicted RBP8.21□□□□□ -1.09
SYNE1-213ENST00000448038 HOXC10Q9NYD6 342 aa8.21□□□□□ -1.09
SYNE1-213ENST00000448038 CTAGE9A4FU28 777 aa8.21□□□□□ -1.1
SYNE1-213ENST00000448038 IQCA1LA6NCM1 817 aa8.21□□□□□ -1.1
SYNE1-213ENST00000448038 GNA14O95837 355 aa8.21□□□□□ -1.1
SYNE1-213ENST00000448038 EEPD1Q7L9B9 569 aa8.21□□□□□ -1.1
SYNE1-213ENST00000448038 ZBTB8OSQ8IWT0 167 aa8.21□□□□□ -1.1
SYNE1-213ENST00000448038 PDCL2Q8N4E4 241 aa8.21□□□□□ -1.1
SYNE1-213ENST00000448038 MTFR1LQ9H019 292 aa8.21□□□□□ -1.1
SYNE1-213ENST00000448038 ZNF70Q9UC06 446 aaPredicted RBP8.21□□□□□ -1.1
SYNE1-213ENST00000448038 ENTPD3O75355 529 aa8.21□□□□□ -1.1
SYNE1-213ENST00000448038 KRT9P35527 623 aa8.21□□□□□ -1.1
SYNE1-213ENST00000448038 GJC1P36383 396 aa8.21□□□□□ -1.1
SYNE1-213ENST00000448038 CKAP4Q07065 602 aaKnown RBP8.21□□□□□ -1.1
SYNE1-213ENST00000448038 C3orf67Q6ZVT6 689 aa8.21□□□□□ -1.1
SYNE1-213ENST00000448038 CCDC84Q86UT8 332 aaPredicted RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms