RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 KCNA10Q16322 511 aa24.39■■□□□ 1.49
SDC1-205ENST00000447124 NSMFQ6X4W1 530 aa24.39■■□□□ 1.49
SDC1-205ENST00000447124 CTNNA3Q9UI47 895 aa24.39■■□□□ 1.49
SDC1-205ENST00000447124 TRIM43BA6NCK2 446 aa24.38■■□□□ 1.49
SDC1-205ENST00000447124 GOLGA8HP0CJ92 632 aa24.38■■□□□ 1.49
SDC1-205ENST00000447124 ACLYP53396 1101 aa24.38■■□□□ 1.49
SDC1-205ENST00000447124 BAATQ14032 418 aaPredicted RBP24.38■■□□□ 1.49
SDC1-205ENST00000447124 IMMTQ16891 758 aaKnown RBP24.38■■□□□ 1.49
SDC1-205ENST00000447124 LRIT3Q3SXY7 679 aa24.38■■□□□ 1.49
SDC1-205ENST00000447124 CLEC4DQ8WXI8 215 aa24.38■■□□□ 1.49
SDC1-205ENST00000447124 TRIM43Q96BQ3 446 aaPredicted RBP24.38■■□□□ 1.49
SDC1-205ENST00000447124 UBA5Q9GZZ9 404 aa24.38■■□□□ 1.49
SDC1-205ENST00000447124 CPVLQ9H3G5 476 aa24.38■■□□□ 1.49
SDC1-205ENST00000447124 PDLIM7Q9NR12 457 aa24.38■■□□□ 1.49
SDC1-205ENST00000447124 C11orf97A0A1B0GVM6 126 aaPredicted RBP24.37■■□□□ 1.49
SDC1-205ENST00000447124 ASB14A6NK59 587 aa24.37■■□□□ 1.49
SDC1-205ENST00000447124 NFIBO00712 420 aa24.37■■□□□ 1.49
SDC1-205ENST00000447124 CTAGE5O15320 804 aa24.37■■□□□ 1.49
SDC1-205ENST00000447124 GJA9P57773 515 aa24.37■■□□□ 1.49
SDC1-205ENST00000447124 LBHD1Q9BQE6 289 aaPredicted RBP24.37■■□□□ 1.49
SDC1-205ENST00000447124 UPF3AQ9H1J1 476 aaKnown RBP24.37■■□□□ 1.49
SDC1-205ENST00000447124 PTGS1P23219 599 aa24.36■■□□□ 1.49
SDC1-205ENST00000447124 CHMLP26374 656 aa24.36■■□□□ 1.49
SDC1-205ENST00000447124 NT5C2P49902 561 aa24.36■■□□□ 1.49
SDC1-205ENST00000447124 ZSCAN10Q96SZ4 725 aaPredicted RBP24.36■■□□□ 1.49
SDC1-205ENST00000447124 PRDM5Q9NQX1 630 aaPredicted RBP24.36■■□□□ 1.49
SDC1-205ENST00000447124 PDGFCQ9NRA1 345 aa24.36■■□□□ 1.49
SDC1-205ENST00000447124 PRKAG2Q9UGJ0 569 aa24.36■■□□□ 1.49
SDC1-205ENST00000447124 C6orf222P0C671 652 aaPredicted RBP24.35■■□□□ 1.49
SDC1-205ENST00000447124 ITGB8P26012 769 aa24.35■■□□□ 1.49
SDC1-205ENST00000447124 CST5P28325 142 aaPredicted RBP24.35■■□□□ 1.49
SDC1-205ENST00000447124 PTH1RQ03431 593 aa24.35■■□□□ 1.49
SDC1-205ENST00000447124 CCDC178Q5BJE1 867 aa24.35■■□□□ 1.49
SDC1-205ENST00000447124 TMEM63BQ5T3F8 832 aa24.35■■□□□ 1.49
SDC1-205ENST00000447124 TAPT1Q6NXT6 567 aa24.35■■□□□ 1.49
SDC1-205ENST00000447124 IQCA1Q86XH1 822 aa24.35■■□□□ 1.49
SDC1-205ENST00000447124 ENAHQ8N8S7 591 aaPredicted RBP24.35■■□□□ 1.49
SDC1-205ENST00000447124 PNMA1Q8ND90 353 aa24.35■■□□□ 1.49
SDC1-205ENST00000447124 GNEQ9Y223 722 aaKnown RBP24.35■■□□□ 1.49
SDC1-205ENST00000447124 MOXD2PA6NHM9 499 aa24.34■■□□□ 1.49
SDC1-205ENST00000447124 NKX3-2P78367 333 aa24.34■■□□□ 1.49
SDC1-205ENST00000447124 TNFAIP2Q03169 654 aa24.34■■□□□ 1.49
SDC1-205ENST00000447124 EEPD1Q7L9B9 569 aa24.34■■□□□ 1.49
SDC1-205ENST00000447124 MORC4Q8TE76 937 aa24.34■■□□□ 1.49
SDC1-205ENST00000447124 BADQ92934 168 aa24.34■■□□□ 1.49
SDC1-205ENST00000447124 STARD7Q9NQZ5 370 aa24.34■■□□□ 1.49
SDC1-205ENST00000447124 ASGR1P07306 291 aa24.33■■□□□ 1.49
SDC1-205ENST00000447124 SMPD1P17405 629 aa24.33■■□□□ 1.49
SDC1-205ENST00000447124 GNASQ5JWF2 1037 aa24.33■■□□□ 1.49
SDC1-205ENST00000447124 GPATCH4Q5T3I0 446 aaKnown RBP24.33■■□□□ 1.49
SDC1-205ENST00000447124 KRT23Q9C075 422 aa24.33■■□□□ 1.49
SDC1-205ENST00000447124 KAT14Q9H8E8 782 aa24.33■■□□□ 1.49
SDC1-205ENST00000447124 PQBP1O60828 265 aaKnown RBP24.32■■□□□ 1.48
SDC1-205ENST00000447124 BEX3Q00994 111 aa24.32■■□□□ 1.48
SDC1-205ENST00000447124 CYB5R4Q7L1T6 521 aa24.32■■□□□ 1.48
SDC1-205ENST00000447124 FBXO16Q8IX29 292 aaPredicted RBP24.32■■□□□ 1.48
SDC1-205ENST00000447124 NUP133Q8WUM0 1156 aa24.32■■□□□ 1.48
SDC1-205ENST00000447124 TNKSO95271 1327 aa24.32■■□□□ 1.48
SDC1-205ENST00000447124 CLTBP09497 229 aa24.31■■□□□ 1.48
SDC1-205ENST00000447124 CDK7P50613 346 aa24.31■■□□□ 1.48
SDC1-205ENST00000447124 FAAP100Q0VG06 881 aa24.31■■□□□ 1.48
SDC1-205ENST00000447124 SEC23AQ15436 765 aa24.31■■□□□ 1.48
SDC1-205ENST00000447124 IQSEC1Q6DN90 963 aa24.31■■□□□ 1.48
SDC1-205ENST00000447124 SLC30A10Q6XR72 485 aa24.31■■□□□ 1.48
SDC1-205ENST00000447124 NOL8Q76FK4 1167 aaKnown RBP24.31■■□□□ 1.48
SDC1-205ENST00000447124 ANKRD33Q7Z3H0 272 aa24.31■■□□□ 1.48
SDC1-205ENST00000447124 PCSK9Q8NBP7 692 aaKnown RBP24.31■■□□□ 1.48
SDC1-205ENST00000447124 TOX2Q96NM4 488 aa24.31■■□□□ 1.48
SDC1-205ENST00000447124 SPC25Q9HBM1 224 aa24.31■■□□□ 1.48
SDC1-205ENST00000447124 WDR19Q8NEZ3 1342 aa24.31■■□□□ 1.48
SDC1-205ENST00000447124 RAD50Q92878 1312 aa24.31■■□□□ 1.48
SDC1-205ENST00000447124 LCTP09848 1927 aa24.3■■□□□ 1.48
SDC1-205ENST00000447124 PTPDC1A2A3K4 754 aa24.3■■□□□ 1.48
SDC1-205ENST00000447124 KIAA0355O15063 1070 aa24.3■■□□□ 1.48
SDC1-205ENST00000447124 DYNC1LI2O43237 492 aaPredicted RBP24.3■■□□□ 1.48
SDC1-205ENST00000447124 CYP21A2P08686 494 aa24.3■■□□□ 1.48
SDC1-205ENST00000447124 ALDH5A1P51649 535 aaPredicted RBP24.3■■□□□ 1.48
SDC1-205ENST00000447124 RNF207Q6ZRF8 634 aa24.3■■□□□ 1.48
SDC1-205ENST00000447124 ADGRF4Q8IZF3 695 aa24.3■■□□□ 1.48
SDC1-205ENST00000447124 TBC1D5Q92609 795 aa24.3■■□□□ 1.48
SDC1-205ENST00000447124 CNNM2Q9H8M5 875 aa24.3■■□□□ 1.48
SDC1-205ENST00000447124 PNMA2Q9UL42 364 aa24.3■■□□□ 1.48
SDC1-205ENST00000447124 TAF6LQ9Y6J9 622 aa24.3■■□□□ 1.48
SDC1-205ENST00000447124 LAMA4Q16363 1823 aa24.3■■□□□ 1.48
SDC1-205ENST00000447124 ELP1O95163 1332 aa24.3■■□□□ 1.48
SDC1-205ENST00000447124 CALML3P27482 149 aa24.29■■□□□ 1.48
SDC1-205ENST00000447124 RPS6P62753 249 aaKnown RBP24.29■■□□□ 1.48
SDC1-205ENST00000447124 SHHQ15465 462 aa24.29■■□□□ 1.48
SDC1-205ENST00000447124 C9orf50Q5SZB4 431 aa24.29■■□□□ 1.48
SDC1-205ENST00000447124 RUFY2Q8WXA3 655 aa24.29■■□□□ 1.48
SDC1-205ENST00000447124 GLT1D1Q96MS3 346 aa24.29■■□□□ 1.48
SDC1-205ENST00000447124 SGSM2O43147 1006 aa24.28■■□□□ 1.48
SDC1-205ENST00000447124 USH1GQ495M9 461 aa24.28■■□□□ 1.48
SDC1-205ENST00000447124 GPR153Q6NV75 609 aa24.28■■□□□ 1.48
SDC1-205ENST00000447124 KIAA1211Q6ZU35 1233 aa24.28■■□□□ 1.48
SDC1-205ENST00000447124 VTI1AQ96AJ9 217 aa24.28■■□□□ 1.48
SDC1-205ENST00000447124 VTA1Q9NP79 307 aa24.28■■□□□ 1.48
SDC1-205ENST00000447124 TMEM39AQ9NV64 488 aa24.28■■□□□ 1.48
SDC1-205ENST00000447124 ADD3Q9UEY8 706 aaKnown RBP24.28■■□□□ 1.48
SDC1-205ENST00000447124 LTBP2Q14767 1821 aa24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms