RNA–Protein interactions for RNA: ENST00000442054.5

CDC42BPA-208, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-208ENST00000442054 RIOK1Q9BRS2 568 aaKnown RBP8.42□□□□□ -1.06
CDC42BPA-208ENST00000442054 TEX13BQ9BXU2 312 aa8.42□□□□□ -1.06
CDC42BPA-208ENST00000442054 FTOQ9C0B1 505 aaKnown RBP eCLIP8.42□□□□□ -1.06
CDC42BPA-208ENST00000442054 NID2Q14112 1375 aa8.42□□□□□ -1.06
CDC42BPA-208ENST00000442054 MLLT1Q03111 559 aaPredicted RBP8.42□□□□□ -1.06
CDC42BPA-208ENST00000442054 FMR1NBQ8N0W7 255 aaPredicted RBP8.42□□□□□ -1.06
CDC42BPA-208ENST00000442054 CCDC94Q9BW85 323 aaPredicted RBP8.42□□□□□ -1.06
CDC42BPA-208ENST00000442054 NUP62CLQ9H1M0 184 aa8.42□□□□□ -1.06
CDC42BPA-208ENST00000442054 SPDYE3A6NKU9 549 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 HMGB1P09429 215 aaKnown RBP8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 PTGS1P23219 599 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 COPB2P35606 906 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 PRMT2P55345 433 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 ANTXR2P58335 489 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 SNAP25P60880 206 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 CCZ1BP86790 482 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 CCZ1P86791 482 aaPredicted RBP8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 LRMPQ12912 555 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 HEATR3Q7Z4Q2 680 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 EHD4Q9H223 541 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 FBXO28Q9NVF7 368 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 KIAA1551Q9HCM1 1747 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 FAM237AA0A1B0GTK4 181 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 NDUFB10O96000 172 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 PDIA3P30101 505 aaKnown RBP8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 ATN1P54259 1190 aaPredicted RBP8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 GPATCH4Q5T3I0 446 aaKnown RBP8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 CACTINQ8WUQ7 758 aaKnown RBP8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 ZNF274Q96GC6 653 aaPredicted RBP8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 SCLT1Q96NL6 688 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 ZSCAN16Q9H4T2 348 aaPredicted RBP8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 RNF146Q9NTX7 359 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 SAGE1Q9NXZ1 904 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 FEM1BQ9UK73 627 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 E7EWF7 191 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 NOP56O00567 594 aaKnown RBP8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 RIOK3O14730 519 aaKnown RBP8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 SLC25A27O95847 323 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 ERCC3P19447 782 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 RXRAP19793 462 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 ERVK-9P63128 1117 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 ERVK-24P63145 666 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 MTERF4Q7Z6M4 381 aaKnown RBP8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 DHX37Q8IY37 1157 aaKnown RBP8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 SOCS4Q8WXH5 440 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 TEPSINQ96N21 525 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 KIAA1683Q9H0B3 1180 aa8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 TFIP11Q9UBB9 837 aaKnown RBP8.41□□□□□ -1.06
CDC42BPA-208ENST00000442054 TNKSO95271 1327 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 VPS37CA5D8V6 355 aaPredicted RBP8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 ZBTB43O43298 467 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 PCP11498 1178 aaKnown RBP8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 TM4SF4P48230 202 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 CAMK4Q16566 473 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 TREML2Q5T2D2 321 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 C16orf86Q6ZW13 317 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 DHX32Q7L7V1 743 aaKnown RBP8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 FBXO11Q86XK2 927 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 MB21D2Q8IYB1 491 aaPredicted RBP8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 NEDD1Q8NHV4 660 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 MRFAP1L1Q96HT8 127 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 MRPL11Q9Y3B7 192 aaKnown RBP8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 ZNF831Q5JPB2 1677 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 PPFIA3O75145 1194 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 TPM3P06753 285 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 LACTBP83111 547 aaPredicted RBP8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 NCBP1Q09161 790 aaKnown RBP8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 NCAPHQ15003 741 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 FAM110CQ1W6H9 321 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 SYDE2Q5VT97 1194 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 ARHGEF16Q5VV41 709 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 OTOP1Q7RTM1 612 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 SMAP1Q8IYB5 467 aaPredicted RBP8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 SPATA32Q96LK8 384 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 ZSCAN10Q96SZ4 725 aaPredicted RBP8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 BPIFA3Q9BQP9 254 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 WDR18Q9BV38 432 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 INCENPQ9NQS7 918 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 SRRDQ9UH36 339 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 SAMM50Q9Y512 469 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 PTCH2Q9Y6C5 1203 aa8.4□□□□□ -1.06
CDC42BPA-208ENST00000442054 KLF18A0A0U1RQI7 1052 aa8.4□□□□□ -1.07
CDC42BPA-208ENST00000442054 KLRF2D3W0D1 207 aa8.4□□□□□ -1.07
CDC42BPA-208ENST00000442054 ZEB2O60315 1214 aa8.4□□□□□ -1.07
CDC42BPA-208ENST00000442054 CLSTN1O94985 981 aa8.4□□□□□ -1.07
CDC42BPA-208ENST00000442054 NAPAP54920 295 aa8.4□□□□□ -1.07
CDC42BPA-208ENST00000442054 PRKCZQ05513 592 aa8.4□□□□□ -1.07
CDC42BPA-208ENST00000442054 ATL3Q6DD88 541 aa8.4□□□□□ -1.07
CDC42BPA-208ENST00000442054 SH3BP5LQ7L8J4 393 aa8.4□□□□□ -1.07
CDC42BPA-208ENST00000442054 CKAP2LQ8IYA6 745 aa8.4□□□□□ -1.07
CDC42BPA-208ENST00000442054 USP28Q96RU2 1077 aa8.4□□□□□ -1.07
CDC42BPA-208ENST00000442054 H3BQV1 296 aa8.39□□□□□ -1.07
CDC42BPA-208ENST00000442054 FANCGO15287 622 aa8.39□□□□□ -1.07
CDC42BPA-208ENST00000442054 C6orf222P0C671 652 aaPredicted RBP8.39□□□□□ -1.07
CDC42BPA-208ENST00000442054 CALM1P0DP23 149 aa8.39□□□□□ -1.07
CDC42BPA-208ENST00000442054 CALM2P0DP24 149 aa8.39□□□□□ -1.07
CDC42BPA-208ENST00000442054 CALM3P0DP25 149 aa8.39□□□□□ -1.07
CDC42BPA-208ENST00000442054 FDX1P10109 184 aa8.39□□□□□ -1.07
CDC42BPA-208ENST00000442054 RARBP10826 455 aa8.39□□□□□ -1.07
CDC42BPA-208ENST00000442054 RTN1Q16799 776 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms