RNA–Protein interactions for RNA: ENST00000439886.5

SMPD4-209, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 3,371 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-209ENST00000439886 PACSIN2Q9UNF0 486 aaPredicted RBP12.97□□□□□ -0.33
SMPD4-209ENST00000439886 CAPN6Q9Y6Q1 641 aa12.97□□□□□ -0.33
SMPD4-209ENST00000439886 CHD2O14647 1828 aaKnown RBP12.97□□□□□ -0.33
SMPD4-209ENST00000439886 TPD52L2O43399 206 aaKnown RBP12.97□□□□□ -0.33
SMPD4-209ENST00000439886 PDHBP11177 359 aa12.97□□□□□ -0.33
SMPD4-209ENST00000439886 LSP1P33241 339 aa12.97□□□□□ -0.33
SMPD4-209ENST00000439886 CCNHP51946 323 aaPredicted RBP12.97□□□□□ -0.33
SMPD4-209ENST00000439886 EPHB4P54760 987 aa12.97□□□□□ -0.33
SMPD4-209ENST00000439886 SNX1Q13596 522 aa12.97□□□□□ -0.33
SMPD4-209ENST00000439886 KLHL23Q8NBE8 558 aa12.97□□□□□ -0.33
SMPD4-209ENST00000439886 CCDC47Q96A33 483 aaKnown RBP12.97□□□□□ -0.33
SMPD4-209ENST00000439886 CCDC113Q9H0I3 377 aa12.97□□□□□ -0.33
SMPD4-209ENST00000439886 CHUKO15111 745 aa12.97□□□□□ -0.33
SMPD4-209ENST00000439886 PLEKHA8P1O95397 391 aa12.97□□□□□ -0.33
SMPD4-209ENST00000439886 FTCDO95954 541 aa12.97□□□□□ -0.33
SMPD4-209ENST00000439886 ADCY2Q08462 1091 aa12.97□□□□□ -0.33
SMPD4-209ENST00000439886 UBLCP1Q8WVY7 318 aaPredicted RBP12.97□□□□□ -0.33
SMPD4-209ENST00000439886 RMND1Q9NWS8 449 aa12.97□□□□□ -0.33
SMPD4-209ENST00000439886 AATFQ9NY61 560 aaKnown RBP eCLIP12.97□□□□□ -0.33
SMPD4-209ENST00000439886 STIM2Q9P246 746 aa12.97□□□□□ -0.33
SMPD4-209ENST00000439886 RWDD2AQ9UIY3 292 aa12.97□□□□□ -0.33
SMPD4-209ENST00000439886 CYP2D7A0A087X1C5 515 aa12.96□□□□□ -0.33
SMPD4-209ENST00000439886 ASIC1P78348 528 aa12.96□□□□□ -0.33
SMPD4-209ENST00000439886 IFIT1BQ5T764 474 aaKnown RBP12.96□□□□□ -0.33
SMPD4-209ENST00000439886 NAA35Q5VZE5 725 aa12.96□□□□□ -0.33
SMPD4-209ENST00000439886 CATIPQ7Z7H3 387 aa12.96□□□□□ -0.33
SMPD4-209ENST00000439886 TAX1BP1Q86VP1 789 aa12.96□□□□□ -0.33
SMPD4-209ENST00000439886 IQCA1Q86XH1 822 aa12.96□□□□□ -0.33
SMPD4-209ENST00000439886 ARMC2Q8NEN0 867 aa12.96□□□□□ -0.33
SMPD4-209ENST00000439886 ZNF473Q8WTR7 871 aaKnown RBP12.96□□□□□ -0.33
SMPD4-209ENST00000439886 CCT8L2Q96SF2 557 aa12.96□□□□□ -0.33
SMPD4-209ENST00000439886 TRIM31Q9BZY9 425 aa12.96□□□□□ -0.33
SMPD4-209ENST00000439886 EXOC1Q9NV70 894 aa12.96□□□□□ -0.33
SMPD4-209ENST00000439886 TLDC2A0PJX2 215 aa12.96□□□□□ -0.34
SMPD4-209ENST00000439886 ITGA6P23229 1130 aa12.96□□□□□ -0.34
SMPD4-209ENST00000439886 PBX1P40424 430 aa12.96□□□□□ -0.34
SMPD4-209ENST00000439886 IFT20Q8IY31 132 aa12.96□□□□□ -0.34
SMPD4-209ENST00000439886 TMTC2Q8N394 836 aa12.96□□□□□ -0.34
SMPD4-209ENST00000439886 HPS3Q969F9 1004 aa12.96□□□□□ -0.34
SMPD4-209ENST00000439886 HAUS2Q9NVX0 235 aa12.96□□□□□ -0.34
SMPD4-209ENST00000439886 LIMA1Q9UHB6 759 aaKnown RBP12.96□□□□□ -0.34
SMPD4-209ENST00000439886 XDHP47989 1333 aa12.96□□□□□ -0.34
SMPD4-209ENST00000439886 FAM237AA0A1B0GTK4 181 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 NBPF26B4DH59 902 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 SMIM22K7EJ46 135 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 CPP00450 1065 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 FAM153BP0C7A2 387 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 PHKG2P15735 406 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 EIF4A3P38919 411 aaKnown RBP12.95□□□□□ -0.34
SMPD4-209ENST00000439886 PMS1P54277 932 aaKnown RBP12.95□□□□□ -0.34
SMPD4-209ENST00000439886 RWDD2BP57060 319 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 FAM153CQ494X1 144 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 NT5DC1Q5TFE4 455 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 NBPF15Q8N660 670 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 RBM12Q9NTZ6 932 aaKnown RBP12.95□□□□□ -0.34
SMPD4-209ENST00000439886 FAM153AQ9UHL3 310 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 RIPOR2Q9Y4F9 1068 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 TARSL2A2RTX5 802 aaKnown RBP12.95□□□□□ -0.34
SMPD4-209ENST00000439886 H7C1D1 291 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 TMOD1P28289 359 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 IFFO1Q0D2I5 559 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 NLRP14Q86W24 1093 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 TRIM58Q8NG06 486 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 ZBTB10Q96DT7 871 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 OSBPL9Q96SU4 736 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 CNNM2Q9H8M5 875 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 RMI1Q9H9A7 625 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 GPR108Q9NPR9 543 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 ABCC6O95255 1503 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 TNKSO95271 1327 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 SETD1AO15047 1707 aaKnown RBP12.95□□□□□ -0.34
SMPD4-209ENST00000439886 TMCO5BA8MYB1 307 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 GTPBP6O43824 516 aaPredicted RBP12.95□□□□□ -0.34
SMPD4-209ENST00000439886 PDE4DQ08499 809 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 SNCBQ16143 134 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 C1QTNF12Q5T7M4 302 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 MSL1Q68DK7 614 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 ZNF579Q8NAF0 562 aaKnown RBP12.95□□□□□ -0.34
SMPD4-209ENST00000439886 CCDC26Q8TAB7 109 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 FERMT2Q96AC1 680 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 STRBPQ96SI9 672 aaKnown RBP12.95□□□□□ -0.34
SMPD4-209ENST00000439886 SNX12Q9UMY4 172 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 HYOU1Q9Y4L1 999 aa12.95□□□□□ -0.34
SMPD4-209ENST00000439886 TRAF1Q13077 416 aa12.94□□□□□ -0.34
SMPD4-209ENST00000439886 PPP1R7Q15435 360 aa12.94□□□□□ -0.34
SMPD4-209ENST00000439886 ZNF658Q5TYW1 1059 aaPredicted RBP12.94□□□□□ -0.34
SMPD4-209ENST00000439886 CCDC13Q8IYE1 715 aa12.94□□□□□ -0.34
SMPD4-209ENST00000439886 UIMC1Q96RL1 719 aa12.94□□□□□ -0.34
SMPD4-209ENST00000439886 TACO1Q9BSH4 297 aaKnown RBP12.94□□□□□ -0.34
SMPD4-209ENST00000439886 KIF9Q9HAQ2 790 aa12.94□□□□□ -0.34
SMPD4-209ENST00000439886 ANKRD18BA2A2Z9 1011 aa12.94□□□□□ -0.34
SMPD4-209ENST00000439886 LGALS16A8MUM7 142 aa12.94□□□□□ -0.34
SMPD4-209ENST00000439886 CLTAP09496 248 aa12.94□□□□□ -0.34
SMPD4-209ENST00000439886 GCFC2P16383 781 aaKnown RBP12.94□□□□□ -0.34
SMPD4-209ENST00000439886 ABCD1P33897 745 aa12.94□□□□□ -0.34
SMPD4-209ENST00000439886 DNM2P50570 870 aa12.94□□□□□ -0.34
SMPD4-209ENST00000439886 EHHADHQ08426 723 aa12.94□□□□□ -0.34
SMPD4-209ENST00000439886 PAPD7Q5XG87 772 aaKnown RBP12.94□□□□□ -0.34
SMPD4-209ENST00000439886 WDR59Q6PJI9 974 aa12.94□□□□□ -0.34
SMPD4-209ENST00000439886 TCP11Q8WWU5 503 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms