RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 DCAF4Q8WV16 495 aa17.13■□□□□ 0.33
SDC1-204ENST00000429035 MYLIPQ8WY64 445 aa17.13■□□□□ 0.33
SDC1-204ENST00000429035 TOX2Q96NM4 488 aa17.13■□□□□ 0.33
SDC1-204ENST00000429035 CDX2Q99626 313 aaPredicted RBP17.13■□□□□ 0.33
SDC1-204ENST00000429035 KATNBL1Q9H079 304 aa17.13■□□□□ 0.33
SDC1-204ENST00000429035 GPCPD1Q9NPB8 672 aa17.13■□□□□ 0.33
SDC1-204ENST00000429035 ELP1O95163 1332 aa17.13■□□□□ 0.33
SDC1-204ENST00000429035 ORC4O43929 436 aa17.12■□□□□ 0.33
SDC1-204ENST00000429035 NMIQ13287 307 aaPredicted RBP17.12■□□□□ 0.33
SDC1-204ENST00000429035 MCMDC2Q4G0Z9 681 aa17.12■□□□□ 0.33
SDC1-204ENST00000429035 TTBK2Q6IQ55 1244 aa17.12■□□□□ 0.33
SDC1-204ENST00000429035 ZNF589Q86UQ0 364 aaPredicted RBP17.12■□□□□ 0.33
SDC1-204ENST00000429035 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.12■□□□□ 0.33
SDC1-204ENST00000429035 AP5M1Q9H0R1 490 aa17.12■□□□□ 0.33
SDC1-204ENST00000429035 SEMA6BQ9H3T3 888 aa17.12■□□□□ 0.33
SDC1-204ENST00000429035 ANAPC4Q9UJX5 808 aa17.12■□□□□ 0.33
SDC1-204ENST00000429035 ARVCFO00192 962 aa17.11■□□□□ 0.33
SDC1-204ENST00000429035 PLA2G6O60733 806 aa17.11■□□□□ 0.33
SDC1-204ENST00000429035 TIMP1P01033 207 aa17.11■□□□□ 0.33
SDC1-204ENST00000429035 FOSL2P15408 326 aa17.11■□□□□ 0.33
SDC1-204ENST00000429035 SYDE2Q5VT97 1194 aa17.11■□□□□ 0.33
SDC1-204ENST00000429035 B4GALNT3Q6L9W6 998 aa17.11■□□□□ 0.33
SDC1-204ENST00000429035 CXCL17Q6UXB2 119 aa17.11■□□□□ 0.33
SDC1-204ENST00000429035 MAFAQ8NHW3 353 aaPredicted RBP17.11■□□□□ 0.33
SDC1-204ENST00000429035 PURBQ96QR8 312 aaKnown RBP17.11■□□□□ 0.33
SDC1-204ENST00000429035 TTYH1Q9H313 450 aaPredicted RBP17.11■□□□□ 0.33
SDC1-204ENST00000429035 CYP39A1Q9NYL5 469 aa17.11■□□□□ 0.33
SDC1-204ENST00000429035 TBX21Q9UL17 535 aa17.11■□□□□ 0.33
SDC1-204ENST00000429035 CCDC171Q6TFL3 1326 aa17.11■□□□□ 0.33
SDC1-204ENST00000429035 MYH6P13533 1939 aa17.11■□□□□ 0.33
SDC1-204ENST00000429035 PTPDC1A2A3K4 754 aa17.1■□□□□ 0.33
SDC1-204ENST00000429035 DYNC1LI2O43237 492 aaPredicted RBP17.1■□□□□ 0.33
SDC1-204ENST00000429035 FGAP02671 866 aa17.1■□□□□ 0.33
SDC1-204ENST00000429035 ICAM1P05362 532 aa17.1■□□□□ 0.33
SDC1-204ENST00000429035 TOP1P11387 765 aaKnown RBP17.1■□□□□ 0.33
SDC1-204ENST00000429035 PPIGQ13427 754 aaKnown RBP eCLIP17.1■□□□□ 0.33
SDC1-204ENST00000429035 HDAC1Q13547 482 aaPredicted RBP17.1■□□□□ 0.33
SDC1-204ENST00000429035 FSCN1Q16658 493 aaKnown RBP17.1■□□□□ 0.33
SDC1-204ENST00000429035 TMEM47Q9BQJ4 181 aa17.1■□□□□ 0.33
SDC1-204ENST00000429035 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.1■□□□□ 0.33
SDC1-204ENST00000429035 RANBP17Q9H2T7 1088 aaKnown RBP17.1■□□□□ 0.33
SDC1-204ENST00000429035 PDGFCQ9NRA1 345 aa17.1■□□□□ 0.33
SDC1-204ENST00000429035 ASTN1O14525 1302 aa17.1■□□□□ 0.33
SDC1-204ENST00000429035 GBF1Q92538 1859 aa17.1■□□□□ 0.33
SDC1-204ENST00000429035 ZEB2O60315 1214 aa17.09■□□□□ 0.33
SDC1-204ENST00000429035 HSPD1P10809 573 aaKnown RBP17.09■□□□□ 0.33
SDC1-204ENST00000429035 SMPD1P17405 629 aa17.09■□□□□ 0.33
SDC1-204ENST00000429035 DNAJB2P25686 324 aa17.09■□□□□ 0.33
SDC1-204ENST00000429035 ALX1Q15699 326 aa17.09■□□□□ 0.33
SDC1-204ENST00000429035 MFSD5Q6N075 450 aa17.09■□□□□ 0.33
SDC1-204ENST00000429035 FAM126BQ8IXS8 530 aa17.09■□□□□ 0.33
SDC1-204ENST00000429035 TMEM199Q8N511 208 aa17.09■□□□□ 0.33
SDC1-204ENST00000429035 NFIBO00712 420 aa17.08■□□□□ 0.32
SDC1-204ENST00000429035 CTAGE5O15320 804 aa17.08■□□□□ 0.32
SDC1-204ENST00000429035 ACRP10323 421 aa17.08■□□□□ 0.32
SDC1-204ENST00000429035 CSF2RAP15509 400 aa17.08■□□□□ 0.32
SDC1-204ENST00000429035 CALML3P27482 149 aa17.08■□□□□ 0.32
SDC1-204ENST00000429035 CDK7P50613 346 aa17.08■□□□□ 0.32
SDC1-204ENST00000429035 ALDH5A1P51649 535 aaPredicted RBP17.08■□□□□ 0.32
SDC1-204ENST00000429035 BAATQ14032 418 aaPredicted RBP17.08■□□□□ 0.32
SDC1-204ENST00000429035 SLC30A10Q6XR72 485 aa17.08■□□□□ 0.32
SDC1-204ENST00000429035 KIAA1211Q6ZU35 1233 aa17.08■□□□□ 0.32
SDC1-204ENST00000429035 TBC1D10CQ8IV04 446 aa17.08■□□□□ 0.32
SDC1-204ENST00000429035 VTA1Q9NP79 307 aa17.08■□□□□ 0.32
SDC1-204ENST00000429035 GNEQ9Y223 722 aaKnown RBP17.08■□□□□ 0.32
SDC1-204ENST00000429035 MYO9BQ13459 2157 aa17.08■□□□□ 0.32
SDC1-204ENST00000429035 ZMYM6O95789 1325 aa17.07■□□□□ 0.32
SDC1-204ENST00000429035 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.07■□□□□ 0.32
SDC1-204ENST00000429035 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.07■□□□□ 0.32
SDC1-204ENST00000429035 PDHBP11177 359 aa17.07■□□□□ 0.32
SDC1-204ENST00000429035 CYP2C18P33260 490 aa17.07■□□□□ 0.32
SDC1-204ENST00000429035 PSMC6P62333 389 aa17.07■□□□□ 0.32
SDC1-204ENST00000429035 ITGA7Q13683 1181 aa17.07■□□□□ 0.32
SDC1-204ENST00000429035 MFSD6Q6ZSS7 791 aa17.07■□□□□ 0.32
SDC1-204ENST00000429035 ZKSCAN3Q9BRR0 538 aa17.07■□□□□ 0.32
SDC1-204ENST00000429035 ADD3Q9UEY8 706 aaKnown RBP17.07■□□□□ 0.32
SDC1-204ENST00000429035 CDH23Q9H251 3354 aa17.07■□□□□ 0.32
SDC1-204ENST00000429035 UNC80Q8N2C7 3258 aa17.06■□□□□ 0.32
SDC1-204ENST00000429035 NEDD4P46934 1319 aa17.06■□□□□ 0.32
SDC1-204ENST00000429035 CABYRO75952 493 aa17.06■□□□□ 0.32
SDC1-204ENST00000429035 NOVP48745 357 aa17.06■□□□□ 0.32
SDC1-204ENST00000429035 AKNAD1Q5T1N1 836 aa17.06■□□□□ 0.32
SDC1-204ENST00000429035 TMEM63BQ5T3F8 832 aa17.06■□□□□ 0.32
SDC1-204ENST00000429035 TAPT1Q6NXT6 567 aa17.06■□□□□ 0.32
SDC1-204ENST00000429035 PSRC1Q6PGN9 363 aaPredicted RBP17.06■□□□□ 0.32
SDC1-204ENST00000429035 TIFAQ96CG3 184 aa17.06■□□□□ 0.32
SDC1-204ENST00000429035 HIPK3Q9H422 1215 aa17.06■□□□□ 0.32
SDC1-204ENST00000429035 CUL9Q8IWT3 2517 aa17.05■□□□□ 0.32
SDC1-204ENST00000429035 UMODL1Q5DID0 1318 aa17.05■□□□□ 0.32
SDC1-204ENST00000429035 TMEM265A0A087WTH1 108 aa17.05■□□□□ 0.32
SDC1-204ENST00000429035 FGRP09769 529 aa17.05■□□□□ 0.32
SDC1-204ENST00000429035 MFAP1P55081 439 aaKnown RBP17.05■□□□□ 0.32
SDC1-204ENST00000429035 USH1GQ495M9 461 aa17.05■□□□□ 0.32
SDC1-204ENST00000429035 TMEM240Q5SV17 173 aa17.05■□□□□ 0.32
SDC1-204ENST00000429035 IQSEC1Q6DN90 963 aa17.05■□□□□ 0.32
SDC1-204ENST00000429035 BTNL9Q6UXG8 535 aa17.05■□□□□ 0.32
SDC1-204ENST00000429035 RNF207Q6ZRF8 634 aa17.05■□□□□ 0.32
SDC1-204ENST00000429035 COL25A1Q9BXS0 654 aaPredicted RBP17.05■□□□□ 0.32
SDC1-204ENST00000429035 RNF41Q9H4P4 317 aaPredicted RBP17.05■□□□□ 0.32
SDC1-204ENST00000429035 DIAPH3Q9NSV4 1193 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms