RNA–Protein interactions for RNA: ENST00000425413.5

UBR4-207, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 2,954 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-207ENST00000425413 ZSCAN12O43309 604 aa13.01□□□□□ -0.33
UBR4-207ENST00000425413 PPP1R11O60927 126 aaPredicted RBP13.01□□□□□ -0.33
UBR4-207ENST00000425413 FCER1AP12319 257 aa13.01□□□□□ -0.33
UBR4-207ENST00000425413 TAL1P17542 331 aaPredicted RBP13.01□□□□□ -0.33
UBR4-207ENST00000425413 ALDH1B1P30837 517 aa13.01□□□□□ -0.33
UBR4-207ENST00000425413 COPB1P53618 953 aaKnown RBP13.01□□□□□ -0.33
UBR4-207ENST00000425413 RAD9BQ6WBX8 426 aa13.01□□□□□ -0.33
UBR4-207ENST00000425413 DYMQ7RTS9 669 aa13.01□□□□□ -0.33
UBR4-207ENST00000425413 NUP88Q99567 741 aaPredicted RBP13.01□□□□□ -0.33
UBR4-207ENST00000425413 SRRTQ9BXP5 876 aaKnown RBP13.01□□□□□ -0.33
UBR4-207ENST00000425413 MRPL44Q9H9J2 332 aaKnown RBP13.01□□□□□ -0.33
UBR4-207ENST00000425413 JMJD4Q9H9V9 463 aa13.01□□□□□ -0.33
UBR4-207ENST00000425413 KCND1Q9NSA2 647 aa13.01□□□□□ -0.33
UBR4-207ENST00000425413 STX10O60499 249 aa13.01□□□□□ -0.33
UBR4-207ENST00000425413 GYPCP04921 128 aa13.01□□□□□ -0.33
UBR4-207ENST00000425413 UBXN1Q04323 297 aa13.01□□□□□ -0.33
UBR4-207ENST00000425413 PDE4DQ08499 809 aa13.01□□□□□ -0.33
UBR4-207ENST00000425413 TCP11X2Q5H9J9 407 aa13.01□□□□□ -0.33
UBR4-207ENST00000425413 GPIHBP1Q8IV16 184 aa13.01□□□□□ -0.33
UBR4-207ENST00000425413 PYM1Q9BRP8 204 aaKnown RBP13.01□□□□□ -0.33
UBR4-207ENST00000425413 DDTLA6NHG4 134 aaPredicted RBP13□□□□□ -0.33
UBR4-207ENST00000425413 MARCH6O60337 910 aa13□□□□□ -0.33
UBR4-207ENST00000425413 GDF11O95390 407 aa13□□□□□ -0.33
UBR4-207ENST00000425413 HLA-DOAP06340 250 aa13□□□□□ -0.33
UBR4-207ENST00000425413 PDE6BP35913 854 aa13□□□□□ -0.33
UBR4-207ENST00000425413 CALCRLQ16602 461 aa13□□□□□ -0.33
UBR4-207ENST00000425413 MASTLQ96GX5 879 aa13□□□□□ -0.33
UBR4-207ENST00000425413 CTAGE1Q96RT6 745 aa13□□□□□ -0.33
UBR4-207ENST00000425413 RIOX1Q9H6W3 641 aa13□□□□□ -0.33
UBR4-207ENST00000425413 KLRC4O43908 158 aa13□□□□□ -0.33
UBR4-207ENST00000425413 ZNF543Q08ER8 600 aa13□□□□□ -0.33
UBR4-207ENST00000425413 STK4Q13043 487 aa13□□□□□ -0.33
UBR4-207ENST00000425413 ADSSL1Q8N142 457 aa13□□□□□ -0.33
UBR4-207ENST00000425413 DNAJC18Q9H819 358 aa13□□□□□ -0.33
UBR4-207ENST00000425413 LRWD1Q9UFC0 647 aa13□□□□□ -0.33
UBR4-207ENST00000425413 KCNJ6P48051 423 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 AOC3Q16853 763 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 SAMD1Q6SPF0 538 aaPredicted RBP12.99□□□□□ -0.33
UBR4-207ENST00000425413 TMC4Q7Z404 712 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 ANKRD20A12PQ8NF67 263 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 PKNOX2Q96KN3 472 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 NUDT12Q9BQG2 462 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 CCSER1Q9C0I3 900 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 SLC39A2Q9NP94 309 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 USP17L15C9J2P7 530 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 USP17L13C9JLJ4 530 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 USP17L11C9JVI0 530 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 USP17L18D6R9N7 530 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 USP17L22D6RA61 530 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 USP17L17D6RBQ6 530 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 USP17L19D6RCP7 530 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 USP17L20D6RJB6 530 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 CCP110O43303 1012 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 IGSF3O75054 1194 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 MFAP3LO75121 409 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 IDEP14735 1019 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 USP17L24Q0WX57 530 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 IKQ13123 557 aaPredicted RBP12.99□□□□□ -0.33
UBR4-207ENST00000425413 MCM6Q14566 821 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 ASPRV1Q53RT3 343 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 USP17L6PQ6QN14 398 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 IRF2BP1Q8IU81 584 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 ACRBPQ8NEB7 543 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 AKT1S1Q96B36 256 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 CDK5RAP3Q96JB5 506 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 MMTAG2Q9BU76 263 aaKnown RBP12.99□□□□□ -0.33
UBR4-207ENST00000425413 CARD6Q9BX69 1037 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 TRIM34Q9BYJ4 488 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 EPC1Q9H2F5 836 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 EXOC1Q9NV70 894 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 KBTBD4Q9NVX7 518 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.99□□□□□ -0.332e-8■■□□□ 13.2
UBR4-207ENST00000425413 MYH1P12882 1939 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 ZBTB22O15209 634 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 SSBP05455 408 aaKnown RBP eCLIP12.99□□□□□ -0.33
UBR4-207ENST00000425413 ERO1AQ96HE7 468 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 TRIM9Q9C026 710 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 ZSWIM4Q9H7M6 989 aa12.99□□□□□ -0.33
UBR4-207ENST00000425413 PSMA7O14818 248 aa12.98□□□□□ -0.33
UBR4-207ENST00000425413 NKRFO15226 690 aaKnown RBP eCLIP12.98□□□□□ -0.33
UBR4-207ENST00000425413 ECE2O60344 883 aa12.98□□□□□ -0.33
UBR4-207ENST00000425413 EEF2P13639 858 aaKnown RBP12.98□□□□□ -0.33
UBR4-207ENST00000425413 PBX1P40424 430 aa12.98□□□□□ -0.33
UBR4-207ENST00000425413 TDRD3Q9H7E2 651 aaKnown RBP12.98□□□□□ -0.33
UBR4-207ENST00000425413 EDIL3O43854 480 aa12.98□□□□□ -0.33
UBR4-207ENST00000425413 ABL1P00519 1130 aa12.98□□□□□ -0.33
UBR4-207ENST00000425413 CASQ1P31415 396 aa12.98□□□□□ -0.33
UBR4-207ENST00000425413 PRPHP41219 470 aa12.98□□□□□ -0.33
UBR4-207ENST00000425413 STIM1Q13586 685 aa12.98□□□□□ -0.33
UBR4-207ENST00000425413 SEPT2Q15019 361 aa12.98□□□□□ -0.33
UBR4-207ENST00000425413 CSGALNACT2Q8N6G5 542 aa12.98□□□□□ -0.33
UBR4-207ENST00000425413 MNS1Q8NEH6 495 aa12.98□□□□□ -0.33
UBR4-207ENST00000425413 CALML4Q96GE6 196 aa12.98□□□□□ -0.33
UBR4-207ENST00000425413 LIMA1Q9UHB6 759 aaKnown RBP12.98□□□□□ -0.33
UBR4-207ENST00000425413 IGKV6D-41A0A0C4DH26 115 aa12.97□□□□□ -0.33
UBR4-207ENST00000425413 PNMA6FA0A0J9YX94 578 aa12.97□□□□□ -0.33
UBR4-207ENST00000425413 LAD1O00515 517 aa12.97□□□□□ -0.33
UBR4-207ENST00000425413 TPM1P09493 284 aa12.97□□□□□ -0.33
UBR4-207ENST00000425413 KRT9P35527 623 aa12.97□□□□□ -0.33
UBR4-207ENST00000425413 NT5C2P49902 561 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms