RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 MYH8P13535 1937 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 ZFYP08048 801 aaPredicted RBP9.63□□□□□ -0.87
VIM-202ENST00000421459 GNAT2P19087 354 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 SLC16A2P36021 539 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 SLC1A4P43007 532 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 STAT2P52630 851 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 PPIGQ13427 754 aaKnown RBP eCLIP9.63□□□□□ -0.87
VIM-202ENST00000421459 ZMYM1Q5SVZ6 1142 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 VPS53Q5VIR6 699 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 TTBK2Q6IQ55 1244 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 TAPT1Q6NXT6 567 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 TLK2Q86UE8 772 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 FBXO16Q8IX29 292 aaPredicted RBP9.63□□□□□ -0.87
VIM-202ENST00000421459 TMEM199Q8N511 208 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 STAG1Q8WVM7 1258 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 GPATCH3Q96I76 525 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 FSD1Q9BTV5 496 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 NAPBQ9H115 298 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 NKX2-4Q9H2Z4 354 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 CHMP4BQ9H444 224 aaKnown RBP9.63□□□□□ -0.87
VIM-202ENST00000421459 SPC25Q9HBM1 224 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 PRR12Q9ULL5 1215 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 STX8Q9UNK0 236 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 YBX2Q9Y2T7 364 aaKnown RBP9.63□□□□□ -0.87
VIM-202ENST00000421459 CUL9Q8IWT3 2517 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 PLXNA1Q9UIW2 1896 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 CHD7Q9P2D1 2997 aa9.63□□□□□ -0.87
VIM-202ENST00000421459 TMEM265A0A087WTH1 108 aa9.62□□□□□ -0.87
VIM-202ENST00000421459 MYOGP15173 224 aa9.62□□□□□ -0.87
VIM-202ENST00000421459 RABGGTBP53611 331 aa9.62□□□□□ -0.87
VIM-202ENST00000421459 OAZ1P54368 228 aa9.62□□□□□ -0.87
VIM-202ENST00000421459 PDE4BQ07343 736 aa9.62□□□□□ -0.87
VIM-202ENST00000421459 ITGA7Q13683 1181 aa9.62□□□□□ -0.87
VIM-202ENST00000421459 FSCN1Q16658 493 aaKnown RBP9.62□□□□□ -0.87
VIM-202ENST00000421459 RCSD1Q6JBY9 416 aa9.62□□□□□ -0.87
VIM-202ENST00000421459 NSMFQ6X4W1 530 aa9.62□□□□□ -0.87
VIM-202ENST00000421459 OTOP2Q7RTS6 562 aa9.62□□□□□ -0.87
VIM-202ENST00000421459 SLC43A3Q8NBI5 491 aa9.62□□□□□ -0.87
VIM-202ENST00000421459 CHURC1Q8WUH1 139 aa9.62□□□□□ -0.87
VIM-202ENST00000421459 VWCEQ96DN2 955 aa9.62□□□□□ -0.87
VIM-202ENST00000421459 SCLYQ96I15 445 aa9.62□□□□□ -0.87
VIM-202ENST00000421459 GMCL1Q96IK5 515 aa9.62□□□□□ -0.87
VIM-202ENST00000421459 HIPK3Q9H422 1215 aa9.62□□□□□ -0.87
VIM-202ENST00000421459 ZNF287Q9HBT7 754 aa9.62□□□□□ -0.87
VIM-202ENST00000421459 IL23AQ9NPF7 189 aa9.62□□□□□ -0.87
VIM-202ENST00000421459 CYP39A1Q9NYL5 469 aa9.62□□□□□ -0.87
VIM-202ENST00000421459 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.62□□□□□ -0.87
VIM-202ENST00000421459 PLIN4Q96Q06 1357 aa9.62□□□□□ -0.87
VIM-202ENST00000421459 MROH7Q68CQ1 1323 aa9.61□□□□□ -0.87
VIM-202ENST00000421459 TSPY2A6NKD2 308 aa9.61□□□□□ -0.87
VIM-202ENST00000421459 TLR3O15455 904 aaKnown RBP9.61□□□□□ -0.87
VIM-202ENST00000421459 B4GALT4O60513 344 aa9.61□□□□□ -0.87
VIM-202ENST00000421459 FGBP02675 491 aa9.61□□□□□ -0.87
VIM-202ENST00000421459 IGFBP4P22692 258 aa9.61□□□□□ -0.87
VIM-202ENST00000421459 NKX3-2P78367 333 aa9.61□□□□□ -0.87
VIM-202ENST00000421459 BAATQ14032 418 aaPredicted RBP9.61□□□□□ -0.87
VIM-202ENST00000421459 KIAA1211Q6ZU35 1233 aa9.61□□□□□ -0.87
VIM-202ENST00000421459 FAM160B2Q86V87 743 aa9.61□□□□□ -0.87
VIM-202ENST00000421459 NACAP1Q9BZK3 213 aa9.61□□□□□ -0.87
VIM-202ENST00000421459 AP5M1Q9H0R1 490 aa9.61□□□□□ -0.87
VIM-202ENST00000421459 WNT8AQ9H1J5 351 aa9.61□□□□□ -0.87
VIM-202ENST00000421459 GPCPD1Q9NPB8 672 aa9.61□□□□□ -0.87
VIM-202ENST00000421459 RAPGEFL1Q9UHV5 662 aa9.61□□□□□ -0.87
VIM-202ENST00000421459 FRMPD2Q68DX3 1309 aaPredicted RBP9.6□□□□□ -0.87
VIM-202ENST00000421459 ASB14A6NK59 587 aa9.6□□□□□ -0.87
VIM-202ENST00000421459 RFXAPO00287 272 aa9.6□□□□□ -0.87
VIM-202ENST00000421459 NFIBO00712 420 aa9.6□□□□□ -0.87
VIM-202ENST00000421459 RANBP6O60518 1105 aaKnown RBP9.6□□□□□ -0.87
VIM-202ENST00000421459 CYP2C9P11712 490 aa9.6□□□□□ -0.87
VIM-202ENST00000421459 CCDC96Q2M329 555 aa9.6□□□□□ -0.87
VIM-202ENST00000421459 TJAP1Q5JTD0 557 aa9.6□□□□□ -0.87
VIM-202ENST00000421459 HERVK_113Q902F9 699 aa9.6□□□□□ -0.87
VIM-202ENST00000421459 GAS2L1Q99501 681 aaPredicted RBP9.6□□□□□ -0.87
VIM-202ENST00000421459 NOC4LQ9BVI4 516 aaKnown RBP9.6□□□□□ -0.87
VIM-202ENST00000421459 TRMT13Q9NUP7 481 aaKnown RBP9.6□□□□□ -0.87
VIM-202ENST00000421459 CCPG1Q9ULG6 757 aa9.6□□□□□ -0.87
VIM-202ENST00000421459 SYNPO2Q9UMS6 1093 aa9.6□□□□□ -0.87
VIM-202ENST00000421459 MYH7P12883 1935 aa9.6□□□□□ -0.87
VIM-202ENST00000421459 TTC41PQ6P2S7 1318 aa9.59□□□□□ -0.87
VIM-202ENST00000421459 SLC3A2P08195 630 aaKnown RBP9.59□□□□□ -0.87
VIM-202ENST00000421459 FDX1P10109 184 aa9.59□□□□□ -0.87
VIM-202ENST00000421459 MX1P20591 662 aa9.59□□□□□ -0.87
VIM-202ENST00000421459 TKFCQ3LXA3 575 aa9.59□□□□□ -0.87
VIM-202ENST00000421459 RRP12Q5JTH9 1297 aaKnown RBP9.59□□□□□ -0.87
VIM-202ENST00000421459 IQSEC1Q6DN90 963 aa9.59□□□□□ -0.87
VIM-202ENST00000421459 PSRC1Q6PGN9 363 aaPredicted RBP9.59□□□□□ -0.87
VIM-202ENST00000421459 SLC30A10Q6XR72 485 aa9.59□□□□□ -0.87
VIM-202ENST00000421459 COPS5Q92905 334 aa9.59□□□□□ -0.87
VIM-202ENST00000421459 FAM227BQ96M60 508 aa9.59□□□□□ -0.87
VIM-202ENST00000421459 CERS4Q9HA82 394 aa9.59□□□□□ -0.87
VIM-202ENST00000421459 TOMM22Q9NS69 142 aa9.59□□□□□ -0.87
VIM-202ENST00000421459 MSRAQ9UJ68 235 aa9.59□□□□□ -0.87
VIM-202ENST00000421459 SALL3Q9BXA9 1300 aa9.58□□□□□ -0.88
VIM-202ENST00000421459 PTPDC1A2A3K4 754 aa9.58□□□□□ -0.88
VIM-202ENST00000421459 ZBBXA8MT70 800 aa9.58□□□□□ -0.88
VIM-202ENST00000421459 ERC2O15083 957 aa9.58□□□□□ -0.88
VIM-202ENST00000421459 PLA2G6O60733 806 aa9.58□□□□□ -0.88
VIM-202ENST00000421459 CABYRO75952 493 aa9.58□□□□□ -0.88
VIM-202ENST00000421459 ICAM1P05362 532 aa9.58□□□□□ -0.88
VIM-202ENST00000421459 MYL3P08590 195 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms