RNA–Protein interactions for RNA: ENST00000419974.2

SHMT1P1-201, Transcript of serine hydroxymethyltransferase 1 (soluble) pseudogene 1, humanhuman

BASIC

Gene SHMT1P1, Length 1,312 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P1-201ENST00000419974 SAGE1Q9NXZ1 904 aa16.35■□□□□ 0.21
SHMT1P1-201ENST00000419974 MAP3K20Q9NYL2 800 aaKnown RBP16.35■□□□□ 0.21
SHMT1P1-201ENST00000419974 PCDHA1Q9Y5I3 950 aa16.35■□□□□ 0.21
SHMT1P1-201ENST00000419974 MYH6P13533 1939 aa16.35■□□□□ 0.21
SHMT1P1-201ENST00000419974 ABCB11O95342 1321 aa16.34■□□□□ 0.21
SHMT1P1-201ENST00000419974 DSG3P32926 999 aa16.34■□□□□ 0.21
SHMT1P1-201ENST00000419974 GNL2Q13823 731 aaKnown RBP16.34■□□□□ 0.21
SHMT1P1-201ENST00000419974 FOXD4L5Q5VV16 416 aaPredicted RBP16.34■□□□□ 0.21
SHMT1P1-201ENST00000419974 MOB2Q70IA6 237 aa16.34■□□□□ 0.21
SHMT1P1-201ENST00000419974 RASAL3Q86YV0 1011 aa16.34■□□□□ 0.21
SHMT1P1-201ENST00000419974 MB21D1Q8N884 522 aa16.34■□□□□ 0.21
SHMT1P1-201ENST00000419974 OXER1Q8TDS5 423 aa16.34■□□□□ 0.21
SHMT1P1-201ENST00000419974 FOXD4L4Q8WXT5 416 aaPredicted RBP16.34■□□□□ 0.21
SHMT1P1-201ENST00000419974 CUL5Q93034 780 aa16.34■□□□□ 0.21
SHMT1P1-201ENST00000419974 OPTNQ96CV9 577 aa16.34■□□□□ 0.21
SHMT1P1-201ENST00000419974 LMBRD1Q9NUN5 540 aa16.34■□□□□ 0.21
SHMT1P1-201ENST00000419974 PCDHA6Q9UN73 950 aa16.34■□□□□ 0.21
SHMT1P1-201ENST00000419974 PCDHA8Q9Y5H6 950 aa16.34■□□□□ 0.21
SHMT1P1-201ENST00000419974 ZNF536O15090 1300 aa16.33■□□□□ 0.21
SHMT1P1-201ENST00000419974 LOC285556D6RIA3 1793 aa16.33■□□□□ 0.21
SHMT1P1-201ENST00000419974 VWA5AO00534 786 aa16.33■□□□□ 0.2
SHMT1P1-201ENST00000419974 FLOT1O75955 427 aa16.33■□□□□ 0.2
SHMT1P1-201ENST00000419974 BMP15O95972 392 aa16.33■□□□□ 0.2
SHMT1P1-201ENST00000419974 ADCY7P51828 1080 aa16.33■□□□□ 0.2
SHMT1P1-201ENST00000419974 NR5A1Q13285 461 aa16.33■□□□□ 0.2
SHMT1P1-201ENST00000419974 AP3B2Q13367 1082 aa16.33■□□□□ 0.2
SHMT1P1-201ENST00000419974 SNAPC2Q13487 334 aa16.33■□□□□ 0.2
SHMT1P1-201ENST00000419974 KRT25Q7Z3Z0 450 aa16.33■□□□□ 0.2
SHMT1P1-201ENST00000419974 REPS2Q8NFH8 660 aa16.33■□□□□ 0.2
SHMT1P1-201ENST00000419974 KIFC2Q96AC6 838 aa16.33■□□□□ 0.2
SHMT1P1-201ENST00000419974 COA7Q96BR5 231 aa16.33■□□□□ 0.2
SHMT1P1-201ENST00000419974 OTUD5Q96G74 571 aa16.33■□□□□ 0.2
SHMT1P1-201ENST00000419974 PSTPIP2Q9H939 334 aa16.33■□□□□ 0.2
SHMT1P1-201ENST00000419974 FBXO28Q9NVF7 368 aa16.33■□□□□ 0.2
SHMT1P1-201ENST00000419974 AGTPBP1Q9UPW5 1226 aa16.33■□□□□ 0.2
SHMT1P1-201ENST00000419974 MRPL11Q9Y3B7 192 aaKnown RBP16.33■□□□□ 0.2
SHMT1P1-201ENST00000419974 ZBED4O75132 1171 aa16.32■□□□□ 0.2
SHMT1P1-201ENST00000419974 PPP6R2O75170 966 aa16.32■□□□□ 0.2
SHMT1P1-201ENST00000419974 FOSP01100 380 aaPredicted RBP16.32■□□□□ 0.2
SHMT1P1-201ENST00000419974 TOB1P50616 345 aaPredicted RBP16.32■□□□□ 0.2
SHMT1P1-201ENST00000419974 PABPC4Q13310 644 aaKnown RBP eCLIP16.32■□□□□ 0.2
SHMT1P1-201ENST00000419974 SKOR2Q2VWA4 1001 aaPredicted RBP16.32■□□□□ 0.2
SHMT1P1-201ENST00000419974 FAM173BQ6P4H8 233 aa16.32■□□□□ 0.2
SHMT1P1-201ENST00000419974 REXO1Q8N1G1 1221 aaKnown RBP16.32■□□□□ 0.2
SHMT1P1-201ENST00000419974 LINC00301Q8NCQ3 95 aa16.32■□□□□ 0.2
SHMT1P1-201ENST00000419974 KCNG4Q8TDN1 519 aa16.32■□□□□ 0.2
SHMT1P1-201ENST00000419974 LEO1Q8WVC0 666 aaPredicted RBP16.32■□□□□ 0.2
SHMT1P1-201ENST00000419974 CNKSR2Q8WXI2 1034 aa16.32■□□□□ 0.2
SHMT1P1-201ENST00000419974 PIBF1Q8WXW3 757 aa16.32■□□□□ 0.2
SHMT1P1-201ENST00000419974 USP28Q96RU2 1077 aa16.32■□□□□ 0.2
SHMT1P1-201ENST00000419974 TANGO6Q9C0B7 1094 aa16.32■□□□□ 0.2
SHMT1P1-201ENST00000419974 NOL7Q9UMY1 257 aaKnown RBP16.32■□□□□ 0.2
SHMT1P1-201ENST00000419974 OPLAHO14841 1288 aa16.31■□□□□ 0.2
SHMT1P1-201ENST00000419974 GJA5P36382 358 aa16.31■□□□□ 0.2
SHMT1P1-201ENST00000419974 GTF2A2P52657 109 aa16.31■□□□□ 0.2
SHMT1P1-201ENST00000419974 FOSBP53539 338 aa16.31■□□□□ 0.2
SHMT1P1-201ENST00000419974 SLC39A14Q15043 492 aa16.31■□□□□ 0.2
SHMT1P1-201ENST00000419974 TKFCQ3LXA3 575 aa16.31■□□□□ 0.2
SHMT1P1-201ENST00000419974 ANO1Q5XXA6 986 aa16.31■□□□□ 0.2
SHMT1P1-201ENST00000419974 GTF3C2Q8WUA4 911 aaPredicted RBP16.31■□□□□ 0.2
SHMT1P1-201ENST00000419974 WNK4Q96J92 1243 aa16.31■□□□□ 0.2
SHMT1P1-201ENST00000419974 MS4A4AQ96JQ5 239 aa16.31■□□□□ 0.2
SHMT1P1-201ENST00000419974 ISY1Q9ULR0 285 aaKnown RBP16.31■□□□□ 0.2
SHMT1P1-201ENST00000419974 CEP131Q9UPN4 1083 aa16.31■□□□□ 0.2
SHMT1P1-201ENST00000419974 CNPY2Q9Y2B0 182 aa16.31■□□□□ 0.2
SHMT1P1-201ENST00000419974 PTPRFP10586 1907 aa16.3■□□□□ 0.2
SHMT1P1-201ENST00000419974 RLFQ13129 1914 aa16.3■□□□□ 0.2
SHMT1P1-201ENST00000419974 BAZ2BQ9UIF8 2168 aaKnown RBP16.3■□□□□ 0.2
SHMT1P1-201ENST00000419974 TESPA1A2RU30 521 aaPredicted RBP16.3■□□□□ 0.2
SHMT1P1-201ENST00000419974 MEIS2O14770 477 aa16.3■□□□□ 0.2
SHMT1P1-201ENST00000419974 CETPP11597 493 aa16.3■□□□□ 0.2
SHMT1P1-201ENST00000419974 UBE2HP62256 183 aa16.3■□□□□ 0.2
SHMT1P1-201ENST00000419974 PTPAQ15257 358 aa16.3■□□□□ 0.2
SHMT1P1-201ENST00000419974 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.3■□□□□ 0.2
SHMT1P1-201ENST00000419974 SPATA32Q96LK8 384 aa16.3■□□□□ 0.2
SHMT1P1-201ENST00000419974 ZCCHC17Q9NP64 241 aaKnown RBP16.3■□□□□ 0.2
SHMT1P1-201ENST00000419974 RNF186Q9NXI6 227 aa16.3■□□□□ 0.2
SHMT1P1-201ENST00000419974 CCDC194A0A1B0GVG4 234 aa16.29■□□□□ 0.2
SHMT1P1-201ENST00000419974 SPDYE16A6NNV3 312 aaPredicted RBP16.29■□□□□ 0.2
SHMT1P1-201ENST00000419974 TM4SF4P48230 202 aa16.29■□□□□ 0.2
SHMT1P1-201ENST00000419974 DGKZQ13574 1117 aa16.29■□□□□ 0.2
SHMT1P1-201ENST00000419974 NONOQ15233 471 aaKnown RBP eCLIP16.29■□□□□ 0.2
SHMT1P1-201ENST00000419974 EARS2Q5JPH6 523 aaKnown RBP16.29■□□□□ 0.2
SHMT1P1-201ENST00000419974 SPRYD7Q5W111 196 aa16.29■□□□□ 0.2
SHMT1P1-201ENST00000419974 GPAT2Q6NUI2 795 aa16.29■□□□□ 0.2
SHMT1P1-201ENST00000419974 MOXD1Q6UVY6 613 aa16.29■□□□□ 0.2
SHMT1P1-201ENST00000419974 MCF2L2Q86YR7 1114 aa16.29■□□□□ 0.2
SHMT1P1-201ENST00000419974 CRYGNQ8WXF5 182 aa16.29■□□□□ 0.2
SHMT1P1-201ENST00000419974 NAP1L4Q99733 375 aaKnown RBP16.29■□□□□ 0.2
SHMT1P1-201ENST00000419974 ZNF214Q9UL59 606 aaPredicted RBP16.29■□□□□ 0.2
SHMT1P1-201ENST00000419974 PARP14Q460N5 1801 aa16.28■□□□□ 0.2
SHMT1P1-201ENST00000419974 LAD1O00515 517 aa16.28■□□□□ 0.2
SHMT1P1-201ENST00000419974 HSD17B4P51659 736 aa16.28■□□□□ 0.2
SHMT1P1-201ENST00000419974 USP11P51784 963 aa16.28■□□□□ 0.2
SHMT1P1-201ENST00000419974 TREML2Q5T2D2 321 aa16.28■□□□□ 0.2
SHMT1P1-201ENST00000419974 PPP4R3AQ6IN85 833 aa16.28■□□□□ 0.2
SHMT1P1-201ENST00000419974 PIK3AP1Q6ZUJ8 805 aa16.28■□□□□ 0.2
SHMT1P1-201ENST00000419974 CLEC4DQ8WXI8 215 aa16.28■□□□□ 0.2
SHMT1P1-201ENST00000419974 ATG4CQ96DT6 458 aa16.28■□□□□ 0.2
SHMT1P1-201ENST00000419974 TFIP11Q9UBB9 837 aaKnown RBP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms