RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 HDLBPQ00341 1268 aaKnown RBP5.57□□□□□ -1.52
HMGB3P20-201ENST00000417997 COL9A2Q14055 689 aaPredicted RBP5.57□□□□□ -1.52
HMGB3P20-201ENST00000417997 KCNA10Q16322 511 aa5.57□□□□□ -1.52
HMGB3P20-201ENST00000417997 METTL16Q86W50 562 aaKnown RBP5.57□□□□□ -1.52
HMGB3P20-201ENST00000417997 TAB3Q8N5C8 712 aaPredicted RBP5.57□□□□□ -1.52
HMGB3P20-201ENST00000417997 SMARCC1Q92922 1105 aaPredicted RBP5.57□□□□□ -1.52
HMGB3P20-201ENST00000417997 MCOLN1Q9GZU1 580 aa5.57□□□□□ -1.52
HMGB3P20-201ENST00000417997 AP5S1Q9NUS5 200 aa5.57□□□□□ -1.52
HMGB3P20-201ENST00000417997 TNFRSF10DQ9UBN6 386 aa5.57□□□□□ -1.52
HMGB3P20-201ENST00000417997 ARHGEF11O15085 1522 aa5.57□□□□□ -1.52
HMGB3P20-201ENST00000417997 TROQ12816 1431 aaPredicted RBP5.57□□□□□ -1.52
HMGB3P20-201ENST00000417997 FGD6Q6ZV73 1430 aa5.57□□□□□ -1.52
HMGB3P20-201ENST00000417997 UACAQ9BZF9 1416 aa5.57□□□□□ -1.52
HMGB3P20-201ENST00000417997 CROCC2H7BZ55 1655 aa5.56□□□□□ -1.52
HMGB3P20-201ENST00000417997 GCC2Q8IWJ2 1684 aa5.56□□□□□ -1.52
HMGB3P20-201ENST00000417997 H0Y8X5 98 aa5.56□□□□□ -1.52
HMGB3P20-201ENST00000417997 ZNF205O95201 554 aa5.56□□□□□ -1.52
HMGB3P20-201ENST00000417997 KRT1P04264 644 aa5.56□□□□□ -1.52
HMGB3P20-201ENST00000417997 PPP2R5EQ16537 467 aa5.56□□□□□ -1.52
HMGB3P20-201ENST00000417997 GALNT18Q6P9A2 607 aa5.56□□□□□ -1.52
HMGB3P20-201ENST00000417997 CPLX3Q8WVH0 158 aa5.56□□□□□ -1.52
HMGB3P20-201ENST00000417997 SPATA32Q96LK8 384 aa5.56□□□□□ -1.52
HMGB3P20-201ENST00000417997 PLCD4Q9BRC7 762 aa5.56□□□□□ -1.52
HMGB3P20-201ENST00000417997 SGPP1Q9BX95 441 aa5.56□□□□□ -1.52
HMGB3P20-201ENST00000417997 ZNF552Q9H707 407 aaPredicted RBP5.56□□□□□ -1.52
HMGB3P20-201ENST00000417997 GP6Q9HCN6 339 aa5.56□□□□□ -1.52
HMGB3P20-201ENST00000417997 ERVK13-1Q9NX77 482 aa5.56□□□□□ -1.52
HMGB3P20-201ENST00000417997 SMG5Q9UPR3 1016 aaKnown RBP5.56□□□□□ -1.52
HMGB3P20-201ENST00000417997 CDK11AQ9UQ88 783 aaPredicted RBP5.56□□□□□ -1.52
HMGB3P20-201ENST00000417997 PREX2Q70Z35 1606 aa5.56□□□□□ -1.52
HMGB3P20-201ENST00000417997 MYOCOSA0A1B0GUC4 107 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 A0A1W2PQ27 194 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 A0A1W2PQ64 194 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 A0A1W2PQC6 194 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 A0A1W2PQD8 194 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 WTIPA6NIX2 430 aaPredicted RBP5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 FADS2P1A8MWK0 482 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 SHOXO15266 292 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 NUAK1O60285 661 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 ZSCAN22P10073 491 aaPredicted RBP5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 ITGA4P13612 1032 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 GLDCP23378 1020 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 NASPP49321 788 aaPredicted RBP5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 ZNF445P59923 1031 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 DLG4P78352 724 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 FAM50AQ14320 339 aaKnown RBP5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 PPP2R5DQ14738 602 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 KIR3DS1Q14943 382 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 TCEAL1Q15170 157 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 GNPTABQ3T906 1256 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 HSF5Q4G112 596 aaPredicted RBP5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 CIAPIN1Q6FI81 312 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 FIBCD1Q8N539 461 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 RBBP8NLQ8NC74 664 aaPredicted RBP5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 NUP43Q8NFH3 380 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 ZDHHC15Q96MV8 337 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 SRRTQ9BXP5 876 aaKnown RBP5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 NOL6Q9H6R4 1146 aaKnown RBP5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 CD320Q9NPF0 282 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 CRTAC1Q9NQ79 661 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 PRR13Q9NZ81 148 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 KIAA1522Q9P206 1035 aaPredicted RBP5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 ZNF451Q9Y4E5 1061 aa5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 DNMT1P26358 1616 aaKnown RBP5.55□□□□□ -1.52
HMGB3P20-201ENST00000417997 UHRF1BP1LA0JNW5 1464 aa5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 ATP10BO94823 1461 aa5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 UNCXA6NJT0 531 aa5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 PEX10O60683 326 aa5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 MED14OSP0DP75 135 aa5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 PNLIPP16233 465 aa5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 PRKCAP17252 672 aa5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 CD247P20963 164 aa5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 ARL4AP40617 200 aa5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 SOX9P48436 509 aa5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 LINC00310P59036 64 aa5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 SRSF3P84103 164 aaKnown RBP5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 JAMLQ86YT9 394 aa5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 CILP2Q8IUL8 1156 aa5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 ADCY4Q8NFM4 1077 aa5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 CCSER2Q9H7U1 834 aa5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 SIRT5Q9NXA8 310 aa5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 ZNF214Q9UL59 606 aaPredicted RBP5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 PCDHB10Q9UN67 800 aa5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 SF3B6Q9Y3B4 125 aaKnown RBP5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 FHOD1Q9Y613 1164 aa5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.54□□□□□ -1.52
HMGB3P20-201ENST00000417997 LTBP3Q9NS15 1303 aa5.53□□□□□ -1.52
HMGB3P20-201ENST00000417997 TCOF1Q13428 1488 aaKnown RBP5.53□□□□□ -1.52
HMGB3P20-201ENST00000417997 TEX51A0A1B0GUA7 166 aa5.53□□□□□ -1.52
HMGB3P20-201ENST00000417997 SEMA7AO75326 666 aa5.53□□□□□ -1.52
HMGB3P20-201ENST00000417997 CD3EP07766 207 aa5.53□□□□□ -1.52
HMGB3P20-201ENST00000417997 ZEB1P37275 1124 aaPredicted RBP5.53□□□□□ -1.52
HMGB3P20-201ENST00000417997 CYP4F8P98187 520 aa5.53□□□□□ -1.52
HMGB3P20-201ENST00000417997 RTP2Q5QGT7 225 aa5.53□□□□□ -1.52
HMGB3P20-201ENST00000417997 HEATR6Q6AI08 1181 aaKnown RBP5.53□□□□□ -1.52
HMGB3P20-201ENST00000417997 SPOCD1Q6ZMY3 1216 aa5.53□□□□□ -1.52
HMGB3P20-201ENST00000417997 ADAT2Q7Z6V5 191 aaKnown RBP5.53□□□□□ -1.52
HMGB3P20-201ENST00000417997 SLCO6A1Q86UG4 719 aa5.53□□□□□ -1.52
HMGB3P20-201ENST00000417997 SLC12A9Q9BXP2 914 aa5.53□□□□□ -1.52
HMGB3P20-201ENST00000417997 IRF2BPLQ9H1B7 796 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms