RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 CCPG1Q9ULG6 757 aa16.37■□□□□ 0.21
SF3B1-204ENST00000414963 CTDP1Q9Y5B0 961 aaPredicted RBP16.37■□□□□ 0.21
SF3B1-204ENST00000414963 ATP6V1DQ9Y5K8 247 aa16.37■□□□□ 0.21
SF3B1-204ENST00000414963 PARP14Q460N5 1801 aa16.37■□□□□ 0.21
SF3B1-204ENST00000414963 TM4SF4P48230 202 aa16.36■□□□□ 0.21
SF3B1-204ENST00000414963 ADCY7P51828 1080 aa16.36■□□□□ 0.21
SF3B1-204ENST00000414963 GHRHRQ02643 423 aa16.36■□□□□ 0.21
SF3B1-204ENST00000414963 DEFB115Q30KQ5 88 aa16.36■□□□□ 0.21
SF3B1-204ENST00000414963 TKFCQ3LXA3 575 aa16.36■□□□□ 0.21
SF3B1-204ENST00000414963 MCTP2Q6DN12 878 aa16.36■□□□□ 0.21
SF3B1-204ENST00000414963 MCTP1Q6DN14 999 aa16.36■□□□□ 0.21
SF3B1-204ENST00000414963 SAMD1Q6SPF0 538 aaPredicted RBP16.36■□□□□ 0.21
SF3B1-204ENST00000414963 NOSTRINQ8IVI9 506 aa16.36■□□□□ 0.21
SF3B1-204ENST00000414963 FAM43AQ8N2R8 423 aa16.36■□□□□ 0.21
SF3B1-204ENST00000414963 SAMD3Q8N6K7 520 aa16.36■□□□□ 0.21
SF3B1-204ENST00000414963 OXER1Q8TDS5 423 aa16.36■□□□□ 0.21
SF3B1-204ENST00000414963 TNPO1Q92973 898 aaKnown RBP16.36■□□□□ 0.21
SF3B1-204ENST00000414963 CUL5Q93034 780 aa16.36■□□□□ 0.21
SF3B1-204ENST00000414963 TEX13BQ9BXU2 312 aa16.36■□□□□ 0.21
SF3B1-204ENST00000414963 RBPJLQ9UBG7 517 aa16.36■□□□□ 0.21
SF3B1-204ENST00000414963 RABGAP1Q9Y3P9 1069 aa16.36■□□□□ 0.21
SF3B1-204ENST00000414963 KIF28PB7ZC32 967 aa16.35■□□□□ 0.21
SF3B1-204ENST00000414963 PIK3CDO00329 1044 aa16.35■□□□□ 0.21
SF3B1-204ENST00000414963 OPLAHO14841 1288 aa16.35■□□□□ 0.21
SF3B1-204ENST00000414963 STAT3P40763 770 aa16.35■□□□□ 0.21
SF3B1-204ENST00000414963 GCLCP48506 637 aaPredicted RBP16.35■□□□□ 0.21
SF3B1-204ENST00000414963 SREBF2Q12772 1141 aa16.35■□□□□ 0.21
SF3B1-204ENST00000414963 NOGQ13253 232 aa16.35■□□□□ 0.21
SF3B1-204ENST00000414963 USH1GQ495M9 461 aa16.35■□□□□ 0.21
SF3B1-204ENST00000414963 FOXD4L5Q5VV16 416 aaPredicted RBP16.35■□□□□ 0.21
SF3B1-204ENST00000414963 FERMT3Q86UX7 667 aa16.35■□□□□ 0.21
SF3B1-204ENST00000414963 REM2Q8IYK8 340 aaPredicted RBP16.35■□□□□ 0.21
SF3B1-204ENST00000414963 CPXCR1Q8N123 301 aa16.35■□□□□ 0.21
SF3B1-204ENST00000414963 CLEC4DQ8WXI8 215 aa16.35■□□□□ 0.21
SF3B1-204ENST00000414963 FOXD4L4Q8WXT5 416 aaPredicted RBP16.35■□□□□ 0.21
SF3B1-204ENST00000414963 MAP3K20Q9NYL2 800 aaKnown RBP16.35■□□□□ 0.21
SF3B1-204ENST00000414963 BTBD7Q9P203 1132 aa16.35■□□□□ 0.21
SF3B1-204ENST00000414963 ADAMTS3O15072 1205 aa16.34■□□□□ 0.21
SF3B1-204ENST00000414963 CNMDO75829 334 aa16.34■□□□□ 0.21
SF3B1-204ENST00000414963 CLK2P49760 499 aaKnown RBP16.34■□□□□ 0.21
SF3B1-204ENST00000414963 NR5A1Q13285 461 aa16.34■□□□□ 0.21
SF3B1-204ENST00000414963 ATL3Q6DD88 541 aa16.34■□□□□ 0.21
SF3B1-204ENST00000414963 CYP4F22Q6NT55 531 aa16.34■□□□□ 0.21
SF3B1-204ENST00000414963 IFNL1Q8IU54 200 aa16.34■□□□□ 0.21
SF3B1-204ENST00000414963 RIOX2Q8IUF8 465 aa16.34■□□□□ 0.21
SF3B1-204ENST00000414963 PARK7Q99497 189 aaKnown RBP16.34■□□□□ 0.21
SF3B1-204ENST00000414963 PCDHA6Q9UN73 950 aa16.34■□□□□ 0.21
SF3B1-204ENST00000414963 PCDHA8Q9Y5H6 950 aa16.34■□□□□ 0.21
SF3B1-204ENST00000414963 A0A0G2JMZ2 1700 aa16.33■□□□□ 0.21
SF3B1-204ENST00000414963 IGF2BP3O00425 579 aaKnown RBP eCLIP16.33■□□□□ 0.2
SF3B1-204ENST00000414963 MEIS2O14770 477 aa16.33■□□□□ 0.2
SF3B1-204ENST00000414963 CYP2C8P10632 490 aa16.33■□□□□ 0.2
SF3B1-204ENST00000414963 COPB2P35606 906 aa16.33■□□□□ 0.2
SF3B1-204ENST00000414963 GNL2Q13823 731 aaKnown RBP16.33■□□□□ 0.2
SF3B1-204ENST00000414963 SNRNP48Q6IEG0 339 aaKnown RBP16.33■□□□□ 0.2
SF3B1-204ENST00000414963 KRT25Q7Z3Z0 450 aa16.33■□□□□ 0.2
SF3B1-204ENST00000414963 MCF2L2Q86YR7 1114 aa16.33■□□□□ 0.2
SF3B1-204ENST00000414963 REXO1Q8N1G1 1221 aaKnown RBP16.33■□□□□ 0.2
SF3B1-204ENST00000414963 TRERF1Q96PN7 1200 aa16.33■□□□□ 0.2
SF3B1-204ENST00000414963 SPATC1LQ9H0A9 340 aa16.33■□□□□ 0.2
SF3B1-204ENST00000414963 MORF4L1Q9UBU8 362 aa16.33■□□□□ 0.2
SF3B1-204ENST00000414963 RIPK3Q9Y572 518 aa16.33■□□□□ 0.2
SF3B1-204ENST00000414963 SLC25A27O95847 323 aa16.32■□□□□ 0.2
SF3B1-204ENST00000414963 ALAS1P13196 640 aa16.32■□□□□ 0.2
SF3B1-204ENST00000414963 HSD17B4P51659 736 aa16.32■□□□□ 0.2
SF3B1-204ENST00000414963 MYSM1Q5VVJ2 828 aa16.32■□□□□ 0.2
SF3B1-204ENST00000414963 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.32■□□□□ 0.2
SF3B1-204ENST00000414963 CHST13Q8NET6 341 aa16.32■□□□□ 0.2
SF3B1-204ENST00000414963 CAPNS2Q96L46 248 aa16.32■□□□□ 0.2
SF3B1-204ENST00000414963 TXNRD2Q9NNW7 524 aa16.32■□□□□ 0.2
SF3B1-204ENST00000414963 ADGRA2Q96PE1 1338 aa16.31■□□□□ 0.2
SF3B1-204ENST00000414963 GCOM1H8Y6P7 765 aaPredicted RBP16.31■□□□□ 0.2
SF3B1-204ENST00000414963 FOSP01100 380 aaPredicted RBP16.31■□□□□ 0.2
SF3B1-204ENST00000414963 POLR2MP0CAP2 368 aa16.31■□□□□ 0.2
SF3B1-204ENST00000414963 TAL1P17542 331 aaPredicted RBP16.31■□□□□ 0.2
SF3B1-204ENST00000414963 TRAPPC10P48553 1259 aa16.31■□□□□ 0.2
SF3B1-204ENST00000414963 AP3B2Q13367 1082 aa16.31■□□□□ 0.2
SF3B1-204ENST00000414963 MUM1L1Q5H9M0 696 aa16.31■□□□□ 0.2
SF3B1-204ENST00000414963 SHCBP1Q8NEM2 672 aa16.31■□□□□ 0.2
SF3B1-204ENST00000414963 SMCR8Q8TEV9 937 aaPredicted RBP16.31■□□□□ 0.2
SF3B1-204ENST00000414963 ZNF396Q96N95 335 aaPredicted RBP16.31■□□□□ 0.2
SF3B1-204ENST00000414963 ZIC5Q96T25 663 aa16.31■□□□□ 0.2
SF3B1-204ENST00000414963 MOV10L1Q9BXT6 1211 aaKnown RBP16.31■□□□□ 0.2
SF3B1-204ENST00000414963 RNF146Q9NTX7 359 aa16.31■□□□□ 0.2
SF3B1-204ENST00000414963 BIN2Q9UBW5 565 aaPredicted RBP16.31■□□□□ 0.2
SF3B1-204ENST00000414963 FBXO40Q9UH90 709 aa16.31■□□□□ 0.2
SF3B1-204ENST00000414963 CCDC194A0A1B0GVG4 234 aa16.3■□□□□ 0.2
SF3B1-204ENST00000414963 NFIBO00712 420 aa16.3■□□□□ 0.2
SF3B1-204ENST00000414963 MAP2K2P36507 400 aa16.3■□□□□ 0.2
SF3B1-204ENST00000414963 ERVK-9P63128 1117 aa16.3■□□□□ 0.2
SF3B1-204ENST00000414963 ERVK-24P63145 666 aa16.3■□□□□ 0.2
SF3B1-204ENST00000414963 PLS1Q14651 629 aa16.3■□□□□ 0.2
SF3B1-204ENST00000414963 UBE2SQ16763 222 aa16.3■□□□□ 0.2
SF3B1-204ENST00000414963 RILPL1Q5EBL4 403 aa16.3■□□□□ 0.2
SF3B1-204ENST00000414963 EARS2Q5JPH6 523 aaKnown RBP16.3■□□□□ 0.2
SF3B1-204ENST00000414963 USP17L6PQ6QN14 398 aa16.3■□□□□ 0.2
SF3B1-204ENST00000414963 PAXIP1Q6ZW49 1069 aaPredicted RBP16.3■□□□□ 0.2
SF3B1-204ENST00000414963 GPRC5AQ8NFJ5 357 aa16.3■□□□□ 0.2
SF3B1-204ENST00000414963 RASGRP4Q8TDF6 673 aa16.3■□□□□ 0.2
SF3B1-204ENST00000414963 TBC1D5Q92609 795 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms