RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 RNF146Q9NTX7 359 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 CYP39A1Q9NYL5 469 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 ISY1Q9ULR0 285 aaKnown RBP7.45□□□□□ -1.22
USP54-202ENST00000413442 RIPK3Q9Y572 518 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 RBM8AQ9Y5S9 174 aaKnown RBP7.45□□□□□ -1.22
USP54-202ENST00000413442 NEDD4P46934 1319 aa7.45□□□□□ -1.22
USP54-202ENST00000413442 SMCHD1A6NHR9 2005 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 MOXD2PA6NHM9 499 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 ZBTB5O15062 677 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 ZEB2O60315 1214 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 EVI5O60447 810 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 KPNA6O60684 536 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 CABYRO75952 493 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 ECM2O94769 699 aaPredicted RBP7.44□□□□□ -1.22
USP54-202ENST00000413442 COL6A1P12109 1028 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 PSMA5P28066 241 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 CST5P28325 142 aaPredicted RBP7.44□□□□□ -1.22
USP54-202ENST00000413442 CYP2C19P33261 490 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 TROAPQ12815 778 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 ACVR2BQ13705 512 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 CCL14Q16627 93 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 BRDTQ58F21 947 aaPredicted RBP7.44□□□□□ -1.22
USP54-202ENST00000413442 MCTP2Q6DN12 878 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 KCNV1Q6PIU1 500 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 SAMD1Q6SPF0 538 aaPredicted RBP7.44□□□□□ -1.22
USP54-202ENST00000413442 RNF207Q6ZRF8 634 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 DHX32Q7L7V1 743 aaKnown RBP7.44□□□□□ -1.22
USP54-202ENST00000413442 SGMS1Q86VZ5 419 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 FBXO11Q86XK2 927 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 ADGRF4Q8IZF3 695 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 CTCFLQ8NI51 663 aaPredicted RBP7.44□□□□□ -1.22
USP54-202ENST00000413442 KCNB2Q92953 911 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 SHISA4Q96DD7 197 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 MTMR8Q96EF0 704 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 PAWRQ96IZ0 340 aaKnown RBP7.44□□□□□ -1.22
USP54-202ENST00000413442 AGBL1Q96MI9 1066 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 NEK1Q96PY6 1258 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 VTA1Q9NP79 307 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 GPCPD1Q9NPB8 672 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 ANO2Q9NQ90 1003 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 A1CFQ9NQ94 594 aaKnown RBP7.44□□□□□ -1.22
USP54-202ENST00000413442 FLRT1Q9NZU1 646 aa7.44□□□□□ -1.22
USP54-202ENST00000413442 PNMA6FA0A0J9YX94 578 aa7.43□□□□□ -1.22
USP54-202ENST00000413442 CCDC196A0A1B0GTZ2 297 aa7.43□□□□□ -1.22
USP54-202ENST00000413442 CCDC69A6NI79 296 aa7.43□□□□□ -1.22
USP54-202ENST00000413442 SLC27A2O14975 620 aa7.43□□□□□ -1.22
USP54-202ENST00000413442 PEX10O60683 326 aa7.43□□□□□ -1.22
USP54-202ENST00000413442 STAM2O75886 525 aa7.43□□□□□ -1.22
USP54-202ENST00000413442 SNAI1O95863 264 aaPredicted RBP7.43□□□□□ -1.22
USP54-202ENST00000413442 ZNF865P0CJ78 1059 aaPredicted RBP7.43□□□□□ -1.22
USP54-202ENST00000413442 CCND3P30281 292 aaPredicted RBP7.43□□□□□ -1.22
USP54-202ENST00000413442 BMP8BP34820 402 aa7.43□□□□□ -1.22
USP54-202ENST00000413442 GJA9P57773 515 aa7.43□□□□□ -1.22
USP54-202ENST00000413442 GRM4Q14833 912 aa7.43□□□□□ -1.22
USP54-202ENST00000413442 TMEM67Q5HYA8 995 aa7.43□□□□□ -1.22
USP54-202ENST00000413442 CREB3L3Q68CJ9 461 aa7.43□□□□□ -1.22
USP54-202ENST00000413442 TTBK2Q6IQ55 1244 aa7.43□□□□□ -1.22
USP54-202ENST00000413442 XRRA1Q6P2D8 792 aa7.43□□□□□ -1.22
USP54-202ENST00000413442 MB21D2Q8IYB1 491 aaPredicted RBP7.43□□□□□ -1.22
USP54-202ENST00000413442 NSUN6Q8TEA1 469 aaKnown RBP7.43□□□□□ -1.22
USP54-202ENST00000413442 TOX2Q96NM4 488 aa7.43□□□□□ -1.22
USP54-202ENST00000413442 ZKSCAN3Q9BRR0 538 aa7.43□□□□□ -1.22
USP54-202ENST00000413442 SPZ1Q9BXG8 430 aa7.43□□□□□ -1.22
USP54-202ENST00000413442 GLT8D2Q9H1C3 349 aa7.43□□□□□ -1.22
USP54-202ENST00000413442 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.43□□□□□ -1.22
USP54-202ENST00000413442 RBM27Q9P2N5 1060 aaKnown RBP7.43□□□□□ -1.22
USP54-202ENST00000413442 ELP1O95163 1332 aa7.43□□□□□ -1.22
USP54-202ENST00000413442 MROH7Q68CQ1 1323 aa7.43□□□□□ -1.22
USP54-202ENST00000413442 RBM47A0AV96 593 aaKnown RBP7.42□□□□□ -1.22
USP54-202ENST00000413442 hCG_1984214I3L0E3 225 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 PRC1O43663 620 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 DHX16O60231 1041 aaKnown RBP7.42□□□□□ -1.22
USP54-202ENST00000413442 MYCP01106 439 aaPredicted RBP7.42□□□□□ -1.22
USP54-202ENST00000413442 PGK2P07205 417 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 TGFB3P10600 412 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 SLC16A2P36021 539 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 SLC4A3P48751 1232 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 EXOSC10Q01780 885 aaKnown RBP7.42□□□□□ -1.22
USP54-202ENST00000413442 TNFAIP2Q03169 654 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 TRIM32Q13049 653 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 CCDC174Q6PII3 467 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 NSMFQ6X4W1 530 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 CYB5R4Q7L1T6 521 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 ARMCX2Q7L311 632 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 CCDC144CPQ8IYA2 1237 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 FAM177A1Q8N128 213 aaPredicted RBP7.42□□□□□ -1.22
USP54-202ENST00000413442 ZNF713Q8N859 430 aaPredicted RBP7.42□□□□□ -1.22
USP54-202ENST00000413442 CLEC4DQ8WXI8 215 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 CHMP4CQ96CF2 233 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 AP5M1Q9H0R1 490 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 UPF3AQ9H1J1 476 aaKnown RBP7.42□□□□□ -1.22
USP54-202ENST00000413442 IL25Q9H293 177 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 JMJD4Q9H9V9 463 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 XPNPEP3Q9NQH7 507 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 RBM28Q9NW13 759 aaKnown RBP7.42□□□□□ -1.22
USP54-202ENST00000413442 MAD2L2Q9UI95 211 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 PHF24Q9UPV7 400 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 SLC12A7Q9Y666 1083 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 FRMPD3Q5JV73 1810 aa7.42□□□□□ -1.22
USP54-202ENST00000413442 PTPDC1A2A3K4 754 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms