RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 TACC1O75410 805 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 RPL13P26373 211 aaKnown RBP12.44□□□□□ -0.42
PTPRF-204ENST00000412568 MAP9Q49MG5 647 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 TTBK2Q6IQ55 1244 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 RRAGAQ7L523 313 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 PODNQ7Z5L7 613 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 FBXO33Q7Z6M2 555 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 BCCIPQ9P287 314 aaKnown RBP eCLIP12.44□□□□□ -0.42
PTPRF-204ENST00000412568 GDAQ9Y2T3 454 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 DAGLAQ9Y4D2 1042 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 UBR1Q8IWV7 1749 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 EXOC3O60645 756 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 LONP1P36776 959 aaKnown RBP12.44□□□□□ -0.42
PTPRF-204ENST00000412568 CYP2J2P51589 502 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 GPR162Q16538 588 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 GOLGA1Q92805 767 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 SWAP70Q9UH65 585 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 FRMD4BQ9Y2L6 1034 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 DCCP43146 1447 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 RFX7Q2KHR2 1363 aa12.43□□□□□ -0.42
PTPRF-204ENST00000412568 POTEMA6NI47 508 aa12.43□□□□□ -0.42
PTPRF-204ENST00000412568 PTPREP23469 700 aa12.43□□□□□ -0.42
PTPRF-204ENST00000412568 BIRC3Q13489 604 aa12.43□□□□□ -0.42
PTPRF-204ENST00000412568 CDC37Q16543 378 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-204ENST00000412568 TYW1BQ6NUM6 668 aa12.43□□□□□ -0.42
PTPRF-204ENST00000412568 PAF1Q8N7H5 531 aa12.43□□□□□ -0.42
PTPRF-204ENST00000412568 NAP1L4Q99733 375 aaKnown RBP12.43□□□□□ -0.42
PTPRF-204ENST00000412568 HINFPQ9BQA5 517 aa12.43□□□□□ -0.42
PTPRF-204ENST00000412568 SPATA31A6Q5VVP1 1343 aa12.43□□□□□ -0.42
PTPRF-204ENST00000412568 GYS1P13807 737 aa12.43□□□□□ -0.42
PTPRF-204ENST00000412568 PLCG1P19174 1290 aa12.43□□□□□ -0.42
PTPRF-204ENST00000412568 CCDC84Q86UT8 332 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-204ENST00000412568 TICAM2Q86XR7 235 aa12.43□□□□□ -0.42
PTPRF-204ENST00000412568 FMR1NBQ8N0W7 255 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-204ENST00000412568 ANKRD13CQ8N6S4 541 aa12.43□□□□□ -0.42
PTPRF-204ENST00000412568 GTPBP4Q9BZE4 634 aaKnown RBP12.43□□□□□ -0.42
PTPRF-204ENST00000412568 EPB41P11171 864 aaKnown RBP12.43□□□□□ -0.42
PTPRF-204ENST00000412568 EEF2P13639 858 aaKnown RBP12.43□□□□□ -0.42
PTPRF-204ENST00000412568 IRX3P78415 501 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-204ENST00000412568 SPATA1Q5VX52 437 aa12.43□□□□□ -0.42
PTPRF-204ENST00000412568 SHC4Q6S5L8 630 aa12.43□□□□□ -0.42
PTPRF-204ENST00000412568 EHBP1Q8NDI1 1231 aa12.43□□□□□ -0.42
PTPRF-204ENST00000412568 PPARDQ03181 441 aa12.42□□□□□ -0.42
PTPRF-204ENST00000412568 PFKFB3Q16875 520 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-204ENST00000412568 DHX36Q9H2U1 1008 aaKnown RBP12.42□□□□□ -0.42
PTPRF-204ENST00000412568 PRR29P0C7W0 189 aa12.42□□□□□ -0.42
PTPRF-204ENST00000412568 NEFHP12036 1026 aa12.42□□□□□ -0.42
PTPRF-204ENST00000412568 PPP2R3AQ06190 1150 aa12.42□□□□□ -0.42
PTPRF-204ENST00000412568 ERCC6LQ2NKX8 1250 aa12.42□□□□□ -0.42
PTPRF-204ENST00000412568 DALRD3Q5D0E6 543 aaKnown RBP12.42□□□□□ -0.42
PTPRF-204ENST00000412568 FAM26FQ5R3K3 315 aa12.42□□□□□ -0.42
PTPRF-204ENST00000412568 CIAPIN1Q6FI81 312 aa12.42□□□□□ -0.42
PTPRF-204ENST00000412568 SP8Q8IXZ3 490 aa12.42□□□□□ -0.42
PTPRF-204ENST00000412568 SMAP1Q8IYB5 467 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-204ENST00000412568 MYOCDQ8IZQ8 938 aa12.42□□□□□ -0.42
PTPRF-204ENST00000412568 PAGE5Q96GU1 130 aa12.42□□□□□ -0.42
PTPRF-204ENST00000412568 PANK4Q9NVE7 773 aa12.42□□□□□ -0.42
PTPRF-204ENST00000412568 HPS5Q9UPZ3 1129 aa12.42□□□□□ -0.42
PTPRF-204ENST00000412568 BCL9O00512 1426 aa12.42□□□□□ -0.42
PTPRF-204ENST00000412568 AK9Q5TCS8 1911 aa12.42□□□□□ -0.42
PTPRF-204ENST00000412568 POTEB2H3BUK9 544 aa12.42□□□□□ -0.42
PTPRF-204ENST00000412568 ARHGAP44Q17R89 818 aa12.42□□□□□ -0.42
PTPRF-204ENST00000412568 ARHGEF16Q5VV41 709 aa12.42□□□□□ -0.42
PTPRF-204ENST00000412568 MIER3Q7Z3K6 550 aa12.42□□□□□ -0.42
PTPRF-204ENST00000412568 CASP14P31944 242 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 ETF1P62495 437 aaKnown RBP12.41□□□□□ -0.42
PTPRF-204ENST00000412568 CUL4BQ13620 913 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 GALNT17Q6IS24 598 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 EEPD1Q7L9B9 569 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 CEP112Q8N8E3 955 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 LARP4BQ92615 738 aaKnown RBP12.41□□□□□ -0.42
PTPRF-204ENST00000412568 VTI1AQ96AJ9 217 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 GSDMAQ96QA5 445 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 NT5C3AQ9H0P0 336 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 B4DLN1 442 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 TRAPPC10P48553 1259 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 GADL1Q6ZQY3 521 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 NLRX1Q86UT6 975 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 GPATCH11Q8N954 259 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 ZNF341Q9BYN7 854 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 MRPL11Q9Y3B7 192 aaKnown RBP12.41□□□□□ -0.42
PTPRF-204ENST00000412568 GSTTP1A0A1W2PQM5 241 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 STAT2P52630 851 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 PRAMEF18Q5VWM3 479 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 ANKRD35Q8N283 1001 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 SMCR8Q8TEV9 937 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-204ENST00000412568 CSADQ9Y600 493 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 CNTNAP4Q9C0A0 1308 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 CAMTA1Q9Y6Y1 1673 aa12.41□□□□□ -0.42
PTPRF-204ENST00000412568 SFI1A8K8P3 1242 aa12.4□□□□□ -0.42
PTPRF-204ENST00000412568 F5H6K3 240 aa12.4□□□□□ -0.42
PTPRF-204ENST00000412568 NOP56O00567 594 aaKnown RBP12.4□□□□□ -0.42
PTPRF-204ENST00000412568 FGFR2P21802 821 aa12.4□□□□□ -0.42
PTPRF-204ENST00000412568 KLRC3Q07444 240 aa12.4□□□□□ -0.42
PTPRF-204ENST00000412568 MKRN3Q13064 507 aaKnown RBP12.4□□□□□ -0.42
PTPRF-204ENST00000412568 LRCH2Q5VUJ6 765 aa12.4□□□□□ -0.42
PTPRF-204ENST00000412568 CYP26C1Q6V0L0 522 aa12.4□□□□□ -0.42
PTPRF-204ENST00000412568 POLLQ9UGP5 575 aa12.4□□□□□ -0.42
PTPRF-204ENST00000412568 C3P01024 1663 aa12.4□□□□□ -0.42
PTPRF-204ENST00000412568 GRIN1Q05586 938 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms