RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 FEZ1Q99689 392 aa12.97□□□□□ -0.33
LINC00539-201ENST00000411525 UBA5Q9GZZ9 404 aa12.97□□□□□ -0.33
LINC00539-201ENST00000411525 KCNJ14Q9UNX9 436 aa12.97□□□□□ -0.33
LINC00539-201ENST00000411525 CNPY2Q9Y2B0 182 aa12.97□□□□□ -0.33
LINC00539-201ENST00000411525 TRIM75PA6NK02 468 aa12.96□□□□□ -0.33
LINC00539-201ENST00000411525 H0YGN5 161 aa12.96□□□□□ -0.33
LINC00539-201ENST00000411525 TNPO2O14787 897 aaKnown RBP12.96□□□□□ -0.33
LINC00539-201ENST00000411525 NCLP19338 710 aaKnown RBP12.96□□□□□ -0.33
LINC00539-201ENST00000411525 IRF5Q13568 498 aa12.96□□□□□ -0.33
LINC00539-201ENST00000411525 GNL2Q13823 731 aaKnown RBP12.96□□□□□ -0.33
LINC00539-201ENST00000411525 CSPP1Q1MSJ5 1256 aa12.96□□□□□ -0.33
LINC00539-201ENST00000411525 WWC2Q6AWC2 1192 aa12.96□□□□□ -0.33
LINC00539-201ENST00000411525 TTBK2Q6IQ55 1244 aa12.96□□□□□ -0.33
LINC00539-201ENST00000411525 FAM173BQ6P4H8 233 aa12.96□□□□□ -0.33
LINC00539-201ENST00000411525 HEATR3Q7Z4Q2 680 aa12.96□□□□□ -0.33
LINC00539-201ENST00000411525 DIS3L2Q8IYB7 885 aaKnown RBP12.96□□□□□ -0.33
LINC00539-201ENST00000411525 FAM177A1Q8N128 213 aaPredicted RBP12.96□□□□□ -0.33
LINC00539-201ENST00000411525 TMEM87AQ8NBN3 555 aa12.96□□□□□ -0.33
LINC00539-201ENST00000411525 PROCA1Q8NCQ7 364 aaPredicted RBP12.96□□□□□ -0.33
LINC00539-201ENST00000411525 CCDC148Q8NFR7 591 aa12.96□□□□□ -0.33
LINC00539-201ENST00000411525 PXYLP1Q8TE99 480 aa12.96□□□□□ -0.33
LINC00539-201ENST00000411525 NUP88Q99567 741 aaPredicted RBP12.96□□□□□ -0.33
LINC00539-201ENST00000411525 PHF20Q9BVI0 1012 aa12.96□□□□□ -0.33
LINC00539-201ENST00000411525 AS3MTQ9HBK9 375 aa12.96□□□□□ -0.33
LINC00539-201ENST00000411525 BRMS1Q9HCU9 246 aa12.96□□□□□ -0.33
LINC00539-201ENST00000411525 SH3GLB2Q9NR46 395 aa12.96□□□□□ -0.33
LINC00539-201ENST00000411525 AGTPBP1Q9UPW5 1226 aa12.96□□□□□ -0.33
LINC00539-201ENST00000411525 TCHHQ07283 1943 aa12.96□□□□□ -0.34
LINC00539-201ENST00000411525 hCG_1984214I3L0E3 225 aa12.95□□□□□ -0.34
LINC00539-201ENST00000411525 STXBP3O00186 592 aa12.95□□□□□ -0.34
LINC00539-201ENST00000411525 FIBPO43427 364 aa12.95□□□□□ -0.34
LINC00539-201ENST00000411525 ADCY3O60266 1144 aa12.95□□□□□ -0.34
LINC00539-201ENST00000411525 KRT2P35908 639 aa12.95□□□□□ -0.34
LINC00539-201ENST00000411525 PABPC4Q13310 644 aaKnown RBP eCLIP12.95□□□□□ -0.34
LINC00539-201ENST00000411525 ADGRF4Q8IZF3 695 aa12.95□□□□□ -0.34
LINC00539-201ENST00000411525 SPICE1Q8N0Z3 855 aa12.95□□□□□ -0.34
LINC00539-201ENST00000411525 ZNF713Q8N859 430 aaPredicted RBP12.95□□□□□ -0.34
LINC00539-201ENST00000411525 GPKOWQ92917 476 aaPredicted RBP eCLIP12.95□□□□□ -0.34
LINC00539-201ENST00000411525 COA7Q96BR5 231 aa12.95□□□□□ -0.34
LINC00539-201ENST00000411525 MTMR8Q96EF0 704 aa12.95□□□□□ -0.34
LINC00539-201ENST00000411525 PIGSQ96S52 555 aa12.95□□□□□ -0.34
LINC00539-201ENST00000411525 KIAA1683Q9H0B3 1180 aa12.95□□□□□ -0.34
LINC00539-201ENST00000411525 FOXP1Q9H334 677 aaPredicted RBP12.95□□□□□ -0.34
LINC00539-201ENST00000411525 JMJD4Q9H9V9 463 aa12.95□□□□□ -0.34
LINC00539-201ENST00000411525 BARHL2Q9NY43 387 aa12.95□□□□□ -0.34
LINC00539-201ENST00000411525 NR2E3Q9Y5X4 410 aa12.95□□□□□ -0.34
LINC00539-201ENST00000411525 BAZ2BQ9UIF8 2168 aaKnown RBP12.95□□□□□ -0.34
LINC00539-201ENST00000411525 SGPL1O95470 568 aa12.94□□□□□ -0.34
LINC00539-201ENST00000411525 U2AF2P26368 475 aaKnown RBP eCLIP12.94□□□□□ -0.34
LINC00539-201ENST00000411525 CALML3P27482 149 aa12.94□□□□□ -0.34
LINC00539-201ENST00000411525 SLC16A2P36021 539 aa12.94□□□□□ -0.34
LINC00539-201ENST00000411525 GCLCP48506 637 aaPredicted RBP12.94□□□□□ -0.34
LINC00539-201ENST00000411525 FLT3LGP49771 235 aa12.94□□□□□ -0.34
LINC00539-201ENST00000411525 NLRP5P59047 1200 aa12.94□□□□□ -0.34
LINC00539-201ENST00000411525 ZYXQ15942 572 aaKnown RBP12.94□□□□□ -0.34
LINC00539-201ENST00000411525 FAM110CQ1W6H9 321 aa12.94□□□□□ -0.34
LINC00539-201ENST00000411525 KIAA1755Q5JYT7 1200 aa12.94□□□□□ -0.34
LINC00539-201ENST00000411525 SYDE2Q5VT97 1194 aa12.94□□□□□ -0.34
LINC00539-201ENST00000411525 MYSM1Q5VVJ2 828 aa12.94□□□□□ -0.34
LINC00539-201ENST00000411525 ATL3Q6DD88 541 aa12.94□□□□□ -0.34
LINC00539-201ENST00000411525 BTNL9Q6UXG8 535 aa12.94□□□□□ -0.34
LINC00539-201ENST00000411525 NOSTRINQ8IVI9 506 aa12.94□□□□□ -0.34
LINC00539-201ENST00000411525 U2AF1L4Q8WU68 220 aaKnown RBP12.94□□□□□ -0.34
LINC00539-201ENST00000411525 CCDC12Q8WUD4 166 aaPredicted RBP12.94□□□□□ -0.34
LINC00539-201ENST00000411525 LPAR1Q92633 364 aa12.94□□□□□ -0.34
LINC00539-201ENST00000411525 ZNF396Q96N95 335 aaPredicted RBP12.94□□□□□ -0.34
LINC00539-201ENST00000411525 WDR18Q9BV38 432 aa12.94□□□□□ -0.34
LINC00539-201ENST00000411525 GDPD2Q9HCC8 539 aa12.94□□□□□ -0.34
LINC00539-201ENST00000411525 VAT1LQ9HCJ6 419 aa12.94□□□□□ -0.34
LINC00539-201ENST00000411525 LMBRD1Q9NUN5 540 aa12.94□□□□□ -0.34
LINC00539-201ENST00000411525 GABRQQ9UN88 632 aa12.94□□□□□ -0.34
LINC00539-201ENST00000411525 LOC285556D6RIA3 1793 aa12.94□□□□□ -0.34
LINC00539-201ENST00000411525 RANBP2P49792 3224 aaKnown RBP12.93□□□□□ -0.34
LINC00539-201ENST00000411525 PNMA6FA0A0J9YX94 578 aa12.93□□□□□ -0.34
LINC00539-201ENST00000411525 BTBD18B2RXH4 712 aa12.93□□□□□ -0.34
LINC00539-201ENST00000411525 USP17L10C9JJH3 530 aa12.93□□□□□ -0.34
LINC00539-201ENST00000411525 TMEM232C9JQI7 657 aa12.93□□□□□ -0.34
LINC00539-201ENST00000411525 ZBTB5O15062 677 aa12.93□□□□□ -0.34
LINC00539-201ENST00000411525 WDR46O15213 610 aaKnown RBP12.93□□□□□ -0.34
LINC00539-201ENST00000411525 FARP2O94887 1054 aaPredicted RBP12.93□□□□□ -0.34
LINC00539-201ENST00000411525 STAT2P52630 851 aa12.93□□□□□ -0.34
LINC00539-201ENST00000411525 USP14P54578 494 aa12.93□□□□□ -0.34
LINC00539-201ENST00000411525 NAPAP54920 295 aa12.93□□□□□ -0.34
LINC00539-201ENST00000411525 IKQ13123 557 aaPredicted RBP12.93□□□□□ -0.34
LINC00539-201ENST00000411525 MTMR2Q13614 643 aa12.93□□□□□ -0.34
LINC00539-201ENST00000411525 NPY5RQ15761 445 aa12.93□□□□□ -0.34
LINC00539-201ENST00000411525 CDC37Q16543 378 aaPredicted RBP12.93□□□□□ -0.34
LINC00539-201ENST00000411525 FAM83BQ5T0W9 1011 aa12.93□□□□□ -0.34
LINC00539-201ENST00000411525 GALNT17Q6IS24 598 aa12.93□□□□□ -0.34
LINC00539-201ENST00000411525 TYW1BQ6NUM6 668 aa12.93□□□□□ -0.34
LINC00539-201ENST00000411525 PPP1R18Q6NYC8 613 aa12.93□□□□□ -0.34
LINC00539-201ENST00000411525 UBE2Q1Q7Z7E8 422 aa12.93□□□□□ -0.34
LINC00539-201ENST00000411525 ANKRD13CQ8N6S4 541 aa12.93□□□□□ -0.34
LINC00539-201ENST00000411525 DAGLBQ8NCG7 672 aa12.93□□□□□ -0.34
LINC00539-201ENST00000411525 ZNF280CQ8ND82 737 aa12.93□□□□□ -0.34
LINC00539-201ENST00000411525 SCAND2PQ9GZW5 306 aaPredicted RBP12.93□□□□□ -0.34
LINC00539-201ENST00000411525 UNC93B1Q9H1C4 597 aa12.93□□□□□ -0.34
LINC00539-201ENST00000411525 CFAP45Q9UL16 551 aa12.93□□□□□ -0.34
LINC00539-201ENST00000411525 ESYT2A0FGR8 921 aa12.92□□□□□ -0.34
LINC00539-201ENST00000411525 PLA2G6O60733 806 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms