RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 KATNBL1Q9H079 304 aa17.35■□□□□ 0.37
CBX3-203ENST00000409747 CYP39A1Q9NYL5 469 aa17.35■□□□□ 0.37
CBX3-203ENST00000409747 ELP1O95163 1332 aa17.35■□□□□ 0.37
CBX3-203ENST00000409747 LRRC37A2A6NM11 1700 aa17.35■□□□□ 0.37
CBX3-203ENST00000409747 SOWAHBA6NEL2 793 aa17.34■□□□□ 0.37
CBX3-203ENST00000409747 KIAA0355O15063 1070 aa17.34■□□□□ 0.37
CBX3-203ENST00000409747 PDHBP11177 359 aa17.34■□□□□ 0.37
CBX3-203ENST00000409747 COL6A3P12111 3177 aa17.34■□□□□ 0.37
CBX3-203ENST00000409747 CCDC178Q5BJE1 867 aa17.34■□□□□ 0.37
CBX3-203ENST00000409747 CWC27Q6UX04 472 aaKnown RBP17.34■□□□□ 0.37
CBX3-203ENST00000409747 SH3RF1Q7Z6J0 888 aa17.34■□□□□ 0.37
CBX3-203ENST00000409747 TBC1D10CQ8IV04 446 aa17.34■□□□□ 0.37
CBX3-203ENST00000409747 FRMPD2Q68DX3 1309 aaPredicted RBP17.33■□□□□ 0.37
CBX3-203ENST00000409747 ASGR1P07306 291 aa17.33■□□□□ 0.37
CBX3-203ENST00000409747 RAG1P15918 1043 aa17.33■□□□□ 0.37
CBX3-203ENST00000409747 SLC16A2P36021 539 aa17.33■□□□□ 0.37
CBX3-203ENST00000409747 TNFAIP2Q03169 654 aa17.33■□□□□ 0.37
CBX3-203ENST00000409747 MUM1L1Q5H9M0 696 aa17.33■□□□□ 0.37
CBX3-203ENST00000409747 GNASQ5JWF2 1037 aa17.33■□□□□ 0.37
CBX3-203ENST00000409747 TTBK2Q6IQ55 1244 aa17.33■□□□□ 0.37
CBX3-203ENST00000409747 NSMFQ6X4W1 530 aa17.33■□□□□ 0.37
CBX3-203ENST00000409747 GPCPD1Q9NPB8 672 aa17.33■□□□□ 0.37
CBX3-203ENST00000409747 TMEM39AQ9NV64 488 aa17.33■□□□□ 0.37
CBX3-203ENST00000409747 ADD3Q9UEY8 706 aaKnown RBP17.33■□□□□ 0.37
CBX3-203ENST00000409747 LOC102724159A0A0B4J2E5 919 aa17.33■□□□□ 0.36
CBX3-203ENST00000409747 MYADML2A6NDP7 307 aa17.33■□□□□ 0.36
CBX3-203ENST00000409747 ADCY6O43306 1168 aa17.33■□□□□ 0.36
CBX3-203ENST00000409747 NKX3-2P78367 333 aa17.33■□□□□ 0.36
CBX3-203ENST00000409747 PWP2Q15269 919 aaKnown RBP17.33■□□□□ 0.36
CBX3-203ENST00000409747 FAM109BQ6ICB4 259 aaPredicted RBP17.33■□□□□ 0.36
CBX3-203ENST00000409747 NOL8Q76FK4 1167 aaKnown RBP17.33■□□□□ 0.36
CBX3-203ENST00000409747 Q7L0L9 218 aa17.33■□□□□ 0.36
CBX3-203ENST00000409747 IQCA1Q86XH1 822 aa17.33■□□□□ 0.36
CBX3-203ENST00000409747 NEDD4P46934 1319 aa17.32■□□□□ 0.36
CBX3-203ENST00000409747 A0A0U1RQG5 324 aaPredicted RBP17.32■□□□□ 0.36
CBX3-203ENST00000409747 ZNF543Q08ER8 600 aa17.32■□□□□ 0.36
CBX3-203ENST00000409747 SHHQ15465 462 aa17.32■□□□□ 0.36
CBX3-203ENST00000409747 GPATCH4Q5T3I0 446 aaKnown RBP17.32■□□□□ 0.36
CBX3-203ENST00000409747 DGKHQ86XP1 1220 aa17.32■□□□□ 0.36
CBX3-203ENST00000409747 VTI1AQ96AJ9 217 aa17.32■□□□□ 0.36
CBX3-203ENST00000409747 DSCC1Q9BVC3 393 aa17.32■□□□□ 0.36
CBX3-203ENST00000409747 VTA1Q9NP79 307 aa17.32■□□□□ 0.36
CBX3-203ENST00000409747 STXBP5LQ9Y2K9 1186 aa17.32■□□□□ 0.36
CBX3-203ENST00000409747 WDR19Q8NEZ3 1342 aa17.31■□□□□ 0.36
CBX3-203ENST00000409747 SNHG28P0DPA3 235 aa17.31■□□□□ 0.36
CBX3-203ENST00000409747 FAAP100Q0VG06 881 aa17.31■□□□□ 0.36
CBX3-203ENST00000409747 IMMTQ16891 758 aaKnown RBP17.31■□□□□ 0.36
CBX3-203ENST00000409747 TLK2Q86UE8 772 aa17.31■□□□□ 0.36
CBX3-203ENST00000409747 MTMR10Q9NXD2 777 aa17.31■□□□□ 0.36
CBX3-203ENST00000409747 CTNNA3Q9UI47 895 aa17.31■□□□□ 0.36
CBX3-203ENST00000409747 ZEB2O60315 1214 aa17.3■□□□□ 0.36
CBX3-203ENST00000409747 CABYRO75952 493 aa17.3■□□□□ 0.36
CBX3-203ENST00000409747 FPGSQ05932 587 aa17.3■□□□□ 0.36
CBX3-203ENST00000409747 IQSEC1Q6DN90 963 aa17.3■□□□□ 0.36
CBX3-203ENST00000409747 MORC4Q8TE76 937 aa17.3■□□□□ 0.36
CBX3-203ENST00000409747 MPHOSPH6Q99547 160 aaKnown RBP17.3■□□□□ 0.36
CBX3-203ENST00000409747 AP5M1Q9H0R1 490 aa17.3■□□□□ 0.36
CBX3-203ENST00000409747 GNEQ9Y223 722 aaKnown RBP17.3■□□□□ 0.36
CBX3-203ENST00000409747 LCTP09848 1927 aa17.3■□□□□ 0.36
CBX3-203ENST00000409747 ASTN1O14525 1302 aa17.3■□□□□ 0.36
CBX3-203ENST00000409747 ARVCFO00192 962 aa17.3■□□□□ 0.36
CBX3-203ENST00000409747 TLR3O15455 904 aaKnown RBP17.3■□□□□ 0.36
CBX3-203ENST00000409747 C9orf50Q5SZB4 431 aa17.3■□□□□ 0.36
CBX3-203ENST00000409747 Q9Y3F1 56 aa17.3■□□□□ 0.36
CBX3-203ENST00000409747 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.29■□□□□ 0.36
CBX3-203ENST00000409747 PTPDC1A2A3K4 754 aa17.29■□□□□ 0.36
CBX3-203ENST00000409747 NFIBO00712 420 aa17.29■□□□□ 0.36
CBX3-203ENST00000409747 KDM4AO75164 1064 aa17.29■□□□□ 0.36
CBX3-203ENST00000409747 ITGB8P26012 769 aa17.29■□□□□ 0.36
CBX3-203ENST00000409747 CDK7P50613 346 aa17.29■□□□□ 0.36
CBX3-203ENST00000409747 ALDH5A1P51649 535 aaPredicted RBP17.29■□□□□ 0.36
CBX3-203ENST00000409747 BAATQ14032 418 aaPredicted RBP17.29■□□□□ 0.36
CBX3-203ENST00000409747 FSCN1Q16658 493 aaKnown RBP17.29■□□□□ 0.36
CBX3-203ENST00000409747 ZNF697Q5TEC3 545 aa17.29■□□□□ 0.36
CBX3-203ENST00000409747 FBXO16Q8IX29 292 aaPredicted RBP17.29■□□□□ 0.36
CBX3-203ENST00000409747 SEZ6LQ9BYH1 1024 aa17.29■□□□□ 0.36
CBX3-203ENST00000409747 KAT14Q9H8E8 782 aa17.29■□□□□ 0.36
CBX3-203ENST00000409747 CNNM2Q9H8M5 875 aa17.29■□□□□ 0.36
CBX3-203ENST00000409747 CTAGE5O15320 804 aa17.28■□□□□ 0.36
CBX3-203ENST00000409747 TIMP1P01033 207 aa17.28■□□□□ 0.36
CBX3-203ENST00000409747 IRX5P78411 483 aaPredicted RBP17.28■□□□□ 0.36
CBX3-203ENST00000409747 SMAD3P84022 425 aaKnown RBP17.28■□□□□ 0.36
CBX3-203ENST00000409747 RNF207Q6ZRF8 634 aa17.28■□□□□ 0.36
CBX3-203ENST00000409747 PNMA1Q8ND90 353 aa17.28■□□□□ 0.36
CBX3-203ENST00000409747 SLC17A8Q8NDX2 589 aa17.28■□□□□ 0.36
CBX3-203ENST00000409747 RNPC3Q96LT9 517 aaKnown RBP17.28■□□□□ 0.36
CBX3-203ENST00000409747 ZKSCAN3Q9BRR0 538 aa17.28■□□□□ 0.36
CBX3-203ENST00000409747 KRT23Q9C075 422 aa17.28■□□□□ 0.36
CBX3-203ENST00000409747 TBX21Q9UL17 535 aa17.28■□□□□ 0.36
CBX3-203ENST00000409747 SMPD1P17405 629 aa17.27■□□□□ 0.36
CBX3-203ENST00000409747 BEX3Q00994 111 aa17.27■□□□□ 0.36
CBX3-203ENST00000409747 TAPT1Q6NXT6 567 aa17.27■□□□□ 0.36
CBX3-203ENST00000409747 EEPD1Q7L9B9 569 aa17.27■□□□□ 0.36
CBX3-203ENST00000409747 ZSCAN10Q96SZ4 725 aaPredicted RBP17.27■□□□□ 0.36
CBX3-203ENST00000409747 MAF1Q9H063 256 aa17.27■□□□□ 0.36
CBX3-203ENST00000409747 SUPT16HQ9Y5B9 1047 aaKnown RBP17.27■□□□□ 0.36
CBX3-203ENST00000409747 RAD50Q92878 1312 aa17.27■□□□□ 0.36
CBX3-203ENST00000409747 B4DLN1 442 aa17.27■□□□□ 0.35
CBX3-203ENST00000409747 CALML3P27482 149 aa17.27■□□□□ 0.35
CBX3-203ENST00000409747 MRPL12P52815 198 aaKnown RBP17.27■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms