RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 LRRCC1Q9C099 1032 aa19.2■□□□□ 0.66
CUX2-202ENST00000397643 TRANK1O15050 2925 aa19.19■□□□□ 0.66
CUX2-202ENST00000397643 B4GALT4O60513 344 aa19.19■□□□□ 0.66
CUX2-202ENST00000397643 CABYRO75952 493 aa19.19■□□□□ 0.66
CUX2-202ENST00000397643 FGBP02675 491 aa19.19■□□□□ 0.66
CUX2-202ENST00000397643 SMPD1P17405 629 aa19.19■□□□□ 0.66
CUX2-202ENST00000397643 IGFBP4P22692 258 aa19.19■□□□□ 0.66
CUX2-202ENST00000397643 CCL23P55773 120 aa19.19■□□□□ 0.66
CUX2-202ENST00000397643 ITGA7Q13683 1181 aa19.19■□□□□ 0.66
CUX2-202ENST00000397643 FSCN1Q16658 493 aaKnown RBP19.19■□□□□ 0.66
CUX2-202ENST00000397643 TMEM63BQ5T3F8 832 aa19.19■□□□□ 0.66
CUX2-202ENST00000397643 AGBL1Q96MI9 1066 aa19.19■□□□□ 0.66
CUX2-202ENST00000397643 TRPV6Q9H1D0 765 aa19.19■□□□□ 0.66
CUX2-202ENST00000397643 MTIF3Q9H2K0 278 aaKnown RBP19.19■□□□□ 0.66
CUX2-202ENST00000397643 SLC28A3Q9HAS3 691 aa19.19■□□□□ 0.66
CUX2-202ENST00000397643 ECHDC1Q9NTX5 307 aa19.19■□□□□ 0.66
CUX2-202ENST00000397643 RNF146Q9NTX7 359 aa19.19■□□□□ 0.66
CUX2-202ENST00000397643 TMEM232C9JQI7 657 aa19.18■□□□□ 0.66
CUX2-202ENST00000397643 M0R2C6 588 aa19.18■□□□□ 0.66
CUX2-202ENST00000397643 FDX1P10109 184 aa19.18■□□□□ 0.66
CUX2-202ENST00000397643 RABGGTBP53611 331 aa19.18■□□□□ 0.66
CUX2-202ENST00000397643 ZNF444Q8N0Y2 327 aaPredicted RBP19.18■□□□□ 0.66
CUX2-202ENST00000397643 NEDD1Q8NHV4 660 aa19.18■□□□□ 0.66
CUX2-202ENST00000397643 ASB14A6NK59 587 aa19.17■□□□□ 0.66
CUX2-202ENST00000397643 RNF113AO15541 343 aaKnown RBP19.17■□□□□ 0.66
CUX2-202ENST00000397643 TDO2P48775 406 aa19.17■□□□□ 0.66
CUX2-202ENST00000397643 STAT2P52630 851 aa19.17■□□□□ 0.66
CUX2-202ENST00000397643 RRP1P56182 461 aaKnown RBP19.17■□□□□ 0.66
CUX2-202ENST00000397643 PSMC6P62333 389 aa19.17■□□□□ 0.66
CUX2-202ENST00000397643 TAPT1Q6NXT6 567 aa19.17■□□□□ 0.66
CUX2-202ENST00000397643 NOL8Q76FK4 1167 aaKnown RBP19.17■□□□□ 0.66
CUX2-202ENST00000397643 FBXO16Q8IX29 292 aaPredicted RBP19.17■□□□□ 0.66
CUX2-202ENST00000397643 GMCL1Q96IK5 515 aa19.17■□□□□ 0.66
CUX2-202ENST00000397643 PDGFCQ9NRA1 345 aa19.17■□□□□ 0.66
CUX2-202ENST00000397643 MYOGP15173 224 aa19.16■□□□□ 0.66
CUX2-202ENST00000397643 GNAT2P19087 354 aa19.16■□□□□ 0.66
CUX2-202ENST00000397643 TSHZ3Q63HK5 1081 aa19.16■□□□□ 0.66
CUX2-202ENST00000397643 IFNL3Q8IZI9 196 aa19.16■□□□□ 0.66
CUX2-202ENST00000397643 NECAB3Q96P71 396 aaPredicted RBP19.16■□□□□ 0.66
CUX2-202ENST00000397643 SEZ6LQ9BYH1 1024 aa19.16■□□□□ 0.66
CUX2-202ENST00000397643 ZNF287Q9HBT7 754 aa19.16■□□□□ 0.66
CUX2-202ENST00000397643 SUPT16HQ9Y5B9 1047 aaKnown RBP19.16■□□□□ 0.66
CUX2-202ENST00000397643 PRRC2BQ5JSZ5 2229 aaKnown RBP19.16■□□□□ 0.66
CUX2-202ENST00000397643 DYNC1LI2O43237 492 aaPredicted RBP19.15■□□□□ 0.66
CUX2-202ENST00000397643 TKFCQ3LXA3 575 aa19.15■□□□□ 0.66
CUX2-202ENST00000397643 MUM1L1Q5H9M0 696 aa19.15■□□□□ 0.66
CUX2-202ENST00000397643 PPP2R2DQ66LE6 453 aa19.15■□□□□ 0.66
CUX2-202ENST00000397643 RASGRP2Q7LDG7 609 aa19.15■□□□□ 0.66
CUX2-202ENST00000397643 FAM160B2Q86V87 743 aa19.15■□□□□ 0.66
CUX2-202ENST00000397643 MORC4Q8TE76 937 aa19.15■□□□□ 0.66
CUX2-202ENST00000397643 STAG1Q8WVM7 1258 aa19.15■□□□□ 0.66
CUX2-202ENST00000397643 SCLYQ96I15 445 aa19.15■□□□□ 0.66
CUX2-202ENST00000397643 TRERF1Q96PN7 1200 aa19.15■□□□□ 0.66
CUX2-202ENST00000397643 AP5M1Q9H0R1 490 aa19.15■□□□□ 0.66
CUX2-202ENST00000397643 CYP39A1Q9NYL5 469 aa19.15■□□□□ 0.66
CUX2-202ENST00000397643 Q9Y3F1 56 aa19.15■□□□□ 0.66
CUX2-202ENST00000397643 PCDHA11Q9Y5I1 949 aa19.15■□□□□ 0.66
CUX2-202ENST00000397643 TCF20Q9UGU0 1960 aaKnown RBP19.15■□□□□ 0.66
CUX2-202ENST00000397643 PATL2C9JE40 543 aaKnown RBP19.14■□□□□ 0.65
CUX2-202ENST00000397643 PLA2G6O60733 806 aa19.14■□□□□ 0.65
CUX2-202ENST00000397643 ZFYP08048 801 aaPredicted RBP19.14■□□□□ 0.65
CUX2-202ENST00000397643 BMP1P13497 986 aa19.14■□□□□ 0.65
CUX2-202ENST00000397643 EEPD1Q7L9B9 569 aa19.14■□□□□ 0.65
CUX2-202ENST00000397643 PURBQ96QR8 312 aaKnown RBP19.14■□□□□ 0.65
CUX2-202ENST00000397643 ALDH8A1Q9H2A2 487 aaPredicted RBP19.14■□□□□ 0.65
CUX2-202ENST00000397643 SLC4A7Q9Y6M7 1214 aa19.14■□□□□ 0.65
CUX2-202ENST00000397643 ZEB2O60315 1214 aa19.13■□□□□ 0.65
CUX2-202ENST00000397643 TSPY3P0CV98 308 aa19.13■□□□□ 0.65
CUX2-202ENST00000397643 TSPY8P0CW00 308 aa19.13■□□□□ 0.65
CUX2-202ENST00000397643 ALAS1P13196 640 aa19.13■□□□□ 0.65
CUX2-202ENST00000397643 MCCP23508 829 aa19.13■□□□□ 0.65
CUX2-202ENST00000397643 SLC1A4P43007 532 aa19.13■□□□□ 0.65
CUX2-202ENST00000397643 SNAP25P60880 206 aa19.13■□□□□ 0.65
CUX2-202ENST00000397643 TFAP4Q01664 338 aa19.13■□□□□ 0.65
CUX2-202ENST00000397643 TFF2Q03403 129 aa19.13■□□□□ 0.65
CUX2-202ENST00000397643 IQSEC1Q6DN90 963 aa19.13■□□□□ 0.65
CUX2-202ENST00000397643 CHURC1Q8WUH1 139 aa19.13■□□□□ 0.65
CUX2-202ENST00000397643 CHMP4CQ96CF2 233 aa19.13■□□□□ 0.65
CUX2-202ENST00000397643 SCN5AQ14524 2016 aa19.13■□□□□ 0.65
CUX2-202ENST00000397643 APPP05067 770 aa19.12■□□□□ 0.65
CUX2-202ENST00000397643 ATP2A2P16615 1042 aaKnown RBP19.12■□□□□ 0.65
CUX2-202ENST00000397643 TTLL4Q14679 1199 aa19.12■□□□□ 0.65
CUX2-202ENST00000397643 KCTD1Q719H9 257 aa19.12■□□□□ 0.65
CUX2-202ENST00000397643 RPUSD2Q8IZ73 545 aaKnown RBP19.12■□□□□ 0.65
CUX2-202ENST00000397643 SEC62Q99442 399 aaKnown RBP19.12■□□□□ 0.65
CUX2-202ENST00000397643 VTA1Q9NP79 307 aa19.12■□□□□ 0.65
CUX2-202ENST00000397643 TRMT13Q9NUP7 481 aaKnown RBP19.12■□□□□ 0.65
CUX2-202ENST00000397643 PRR12Q9ULL5 1215 aa19.12■□□□□ 0.65
CUX2-202ENST00000397643 ISY1Q9ULR0 285 aaKnown RBP19.12■□□□□ 0.65
CUX2-202ENST00000397643 POU3F3P20264 500 aaPredicted RBP19.11■□□□□ 0.65
CUX2-202ENST00000397643 PLA2G5P39877 138 aa19.11■□□□□ 0.65
CUX2-202ENST00000397643 PDE4BQ07343 736 aa19.11■□□□□ 0.65
CUX2-202ENST00000397643 PPARAQ07869 468 aa19.11■□□□□ 0.65
CUX2-202ENST00000397643 IKQ13123 557 aaPredicted RBP19.11■□□□□ 0.65
CUX2-202ENST00000397643 MICALL1Q8N3F8 863 aa19.11■□□□□ 0.65
CUX2-202ENST00000397643 CHMP4BQ9H444 224 aaKnown RBP19.11■□□□□ 0.65
CUX2-202ENST00000397643 IL17RBQ9NRM6 502 aa19.11■□□□□ 0.65
CUX2-202ENST00000397643 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.11■□□□□ 0.65
CUX2-202ENST00000397643 SCN10AQ9Y5Y9 1956 aa19.11■□□□□ 0.65
CUX2-202ENST00000397643 EPOPA6NHQ4 379 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms