RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 NVLO15381 856 aaKnown RBP7.87□□□□□ -1.15
UPF2-203ENST00000397053 MTMR3Q13615 1198 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 MMEL1Q495T6 779 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 LONRF3Q496Y0 759 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 CCDC38Q502W7 563 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 ANKRD36BP1Q96IX9 119 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 PNMA3Q9UL41 463 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 CDK13Q14004 1512 aaKnown RBP7.87□□□□□ -1.15
UPF2-203ENST00000397053 TUBB2AQ13885 445 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 USPL1Q5W0Q7 1092 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 TYW1BQ6NUM6 668 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 DNAAF3Q8N9W5 541 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 CACTINQ8WUQ7 758 aaKnown RBP7.86□□□□□ -1.15
UPF2-203ENST00000397053 NLRP7Q8WX94 980 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 TUBB2BQ9BVA1 445 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 LSM14BQ9BX40 385 aaKnown RBP7.86□□□□□ -1.15
UPF2-203ENST00000397053 SLC38A10Q9HBR0 1119 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 METTL14Q9HCE5 456 aaKnown RBP7.86□□□□□ -1.15
UPF2-203ENST00000397053 UHRF1BP1Q6BDS2 1440 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 ATP8B3O60423 1300 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 SLC27A2O14975 620 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 RAD17O75943 681 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 PIK3CAP42336 1068 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 FANCCQ00597 558 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 SF3A3Q12874 501 aaKnown RBP eCLIP7.86□□□□□ -1.15
UPF2-203ENST00000397053 SLC12A1Q13621 1099 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 ADALQ6DHV7 355 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 SMC5Q8IY18 1101 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 BLIDQ8IZY5 108 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 PDZD8Q8NEN9 1154 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 CDC26Q8NHZ8 85 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 RBM46Q8TBY0 533 aaKnown RBP7.86□□□□□ -1.15
UPF2-203ENST00000397053 WHAMMQ8TF30 809 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 GRK7Q8WTQ7 553 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 GJA10Q969M2 543 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 PPP2R3CQ969Q6 453 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 RPGRIP1Q96KN7 1286 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 SPATA17Q96L03 361 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 MMTAG2Q9BU76 263 aaKnown RBP7.86□□□□□ -1.15
UPF2-203ENST00000397053 BLZF1Q9H2G9 400 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 GBP1P32455 592 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 TECP42680 631 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 RAPH1Q70E73 1250 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 NEK8Q86SG6 692 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 PHACTR3Q96KR7 559 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 TRPM2O94759 1503 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 RGS16O15492 202 aaPredicted RBP7.86□□□□□ -1.15
UPF2-203ENST00000397053 ZNF202O95125 648 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 GOLGA8HP0CJ92 632 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 RASSF2P50749 326 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 YWHAGP61981 247 aaKnown RBP eCLIP7.86□□□□□ -1.15
UPF2-203ENST00000397053 DALRD3Q5D0E6 543 aaKnown RBP7.86□□□□□ -1.15
UPF2-203ENST00000397053 MGARPQ8TDB4 240 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 SLF1Q9BQI6 1058 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 MTIF3Q9H2K0 278 aaKnown RBP7.86□□□□□ -1.15
UPF2-203ENST00000397053 TOPBP1Q92547 1522 aa7.86□□□□□ -1.15
UPF2-203ENST00000397053 A6NNZ2 444 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 MYO1FO00160 1098 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 ARL4AP40617 200 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 TFAMQ00059 246 aaKnown RBP7.85□□□□□ -1.15
UPF2-203ENST00000397053 TUBB8Q3ZCM7 444 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 ERFEQ4G0M1 354 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 DSTYKQ6XUX3 929 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 ARMCX2Q7L311 632 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 SIX6OS1Q8N1H7 587 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 IQCDQ96DY2 449 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 DDX41Q9UJV9 622 aaKnown RBP7.85□□□□□ -1.15
UPF2-203ENST00000397053 ERVV-2B6SEH9 535 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 TTC4O95801 387 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 NNMTP40261 264 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 GTF2A1P52655 376 aaPredicted RBP7.85□□□□□ -1.15
UPF2-203ENST00000397053 CTSWP56202 376 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 STX1BP61266 288 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 IRX4P78413 519 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 COG7P83436 770 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 PTK2BQ14289 1009 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 PPP2R5EQ16537 467 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 TRIML1Q8N9V2 468 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 AFAP1L1Q8TED9 768 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 DDX17Q92841 729 aaKnown RBP7.85□□□□□ -1.15
UPF2-203ENST00000397053 NT5C1BQ96P26 610 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 FAM49AQ9H0Q0 323 aaPredicted RBP7.85□□□□□ -1.15
UPF2-203ENST00000397053 LGR6Q9HBX8 967 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 BABAM1Q9NWV8 329 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 RIPOR2Q9Y4F9 1068 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 SEMA3EO15041 775 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 HOXD10P28358 340 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 IFNA8P32881 189 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 PDE1CQ14123 709 aaPredicted RBP7.85□□□□□ -1.15
UPF2-203ENST00000397053 FAM26FQ5R3K3 315 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 LRCH2Q5VUJ6 765 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 KAZNQ674X7 775 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 G2E3Q7L622 706 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 ELMOD1Q8N336 334 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 DDX27Q96GQ7 796 aaKnown RBP7.85□□□□□ -1.15
UPF2-203ENST00000397053 FAM227BQ96M60 508 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 TMEM106CQ9BVX2 250 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 SLC7A5P2Q9GIP4 190 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 HOMER3Q9NSC5 361 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 SUCLA2Q9P2R7 463 aaPredicted RBP7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms