RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 TMX3Q96JJ7 454 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 FEZ1Q99689 392 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 AMNQ9BXJ7 453 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 LOXHD1Q8IVV2 1947 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 CYP3A7-CYP3A51PA0A087WV96 503 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 CYP3A7P24462 503 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 CYP39A1Q9NYL5 469 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 FLOT1O75955 427 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 CYP2C8P10632 490 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 SCG2P13521 617 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 CIITAP33076 1130 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 STAT3P40763 770 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 IRX3P78415 501 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-202ENST00000394943 HTRA3P83110 453 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 SP3Q02447 781 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 AP3B2Q13367 1082 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 WWC2Q6AWC2 1192 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 GPR142Q7Z601 462 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 ARMC5Q96C12 935 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 RRP36Q96EU6 259 aaKnown RBP8.13□□□□□ -1.11
LIMA1-202ENST00000394943 IWS1Q96ST2 819 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 UPF3BQ9BZI7 483 aaKnown RBP8.13□□□□□ -1.11
LIMA1-202ENST00000394943 MRPL11Q9Y3B7 192 aaKnown RBP8.13□□□□□ -1.11
LIMA1-202ENST00000394943 K7ELQ4 463 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-202ENST00000394943 HOXD8P13378 290 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-202ENST00000394943 ICAM3P32942 547 aa8.12□□□□□ -1.11
LIMA1-202ENST00000394943 SYNE3Q6ZMZ3 975 aa8.12□□□□□ -1.11
LIMA1-202ENST00000394943 MCF2L2Q86YR7 1114 aa8.12□□□□□ -1.11
LIMA1-202ENST00000394943 TRIM47Q96LD4 638 aa8.12□□□□□ -1.11
LIMA1-202ENST00000394943 ACAD9Q9H845 621 aa8.12□□□□□ -1.11
LIMA1-202ENST00000394943 RIPK3Q9Y572 518 aa8.12□□□□□ -1.11
LIMA1-202ENST00000394943 FOXN1O15353 648 aa8.12□□□□□ -1.11
LIMA1-202ENST00000394943 TYW1BQ6NUM6 668 aa8.12□□□□□ -1.11
LIMA1-202ENST00000394943 PLEKHH3Q7Z736 793 aa8.12□□□□□ -1.11
LIMA1-202ENST00000394943 WASF1Q92558 559 aa8.12□□□□□ -1.11
LIMA1-202ENST00000394943 EMID1Q96A84 441 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-202ENST00000394943 FRMPD2Q68DX3 1309 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-202ENST00000394943 U2AF2P26368 475 aaKnown RBP eCLIP8.11□□□□□ -1.11
LIMA1-202ENST00000394943 ADD1P35611 737 aaKnown RBP8.11□□□□□ -1.11
LIMA1-202ENST00000394943 MAP2K5Q13163 448 aa8.11□□□□□ -1.11
LIMA1-202ENST00000394943 FBXO11Q86XK2 927 aa8.11□□□□□ -1.11
LIMA1-202ENST00000394943 PIGSQ96S52 555 aa8.11□□□□□ -1.11
LIMA1-202ENST00000394943 LRRC2Q9BYS8 371 aa8.11□□□□□ -1.11
LIMA1-202ENST00000394943 BCL11AQ9H165 835 aa8.11□□□□□ -1.11
LIMA1-202ENST00000394943 SRRDQ9UH36 339 aa8.11□□□□□ -1.11
LIMA1-202ENST00000394943 Q9Y3F1 56 aa8.11□□□□□ -1.11
LIMA1-202ENST00000394943 FCGRTP55899 365 aa8.11□□□□□ -1.11
LIMA1-202ENST00000394943 ZNF296Q8WUU4 475 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-202ENST00000394943 APBA2Q99767 749 aa8.11□□□□□ -1.11
LIMA1-202ENST00000394943 UPF3AQ9H1J1 476 aaKnown RBP8.11□□□□□ -1.11
LIMA1-202ENST00000394943 MUM1L1Q5H9M0 696 aa8.11□□□□□ -1.11
LIMA1-202ENST00000394943 SPICE1Q8N0Z3 855 aa8.11□□□□□ -1.11
LIMA1-202ENST00000394943 PORCNQ9H237 461 aa8.11□□□□□ -1.11
LIMA1-202ENST00000394943 SLKQ9H2G2 1235 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-202ENST00000394943 PTPN22Q9Y2R2 807 aa8.11□□□□□ -1.11
LIMA1-202ENST00000394943 ARID2Q68CP9 1835 aa8.11□□□□□ -1.11
LIMA1-202ENST00000394943 ERCC3P19447 782 aa8.1□□□□□ -1.11
LIMA1-202ENST00000394943 ARHGEF6Q15052 776 aa8.1□□□□□ -1.11
LIMA1-202ENST00000394943 A1CFQ9NQ94 594 aaKnown RBP8.1□□□□□ -1.11
LIMA1-202ENST00000394943 SREBF1P36956 1147 aa8.1□□□□□ -1.11
LIMA1-202ENST00000394943 B3GNT9Q6UX72 402 aa8.1□□□□□ -1.11
LIMA1-202ENST00000394943 SYTL5Q8TDW5 730 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-202ENST00000394943 AGBL1Q96MI9 1066 aa8.1□□□□□ -1.11
LIMA1-202ENST00000394943 TCEANC2Q96MN5 208 aa8.1□□□□□ -1.11
LIMA1-202ENST00000394943 MYL10Q9BUA6 226 aa8.1□□□□□ -1.11
LIMA1-202ENST00000394943 TOMM22Q9NS69 142 aa8.1□□□□□ -1.11
LIMA1-202ENST00000394943 SOWAHBA6NEL2 793 aa8.1□□□□□ -1.11
LIMA1-202ENST00000394943 COBLO75128 1261 aa8.1□□□□□ -1.11
LIMA1-202ENST00000394943 FOSP01100 380 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-202ENST00000394943 HSPA1AP0DMV8 641 aaKnown RBP8.1□□□□□ -1.11
LIMA1-202ENST00000394943 HSPA1BP0DMV9 641 aaKnown RBP8.1□□□□□ -1.11
LIMA1-202ENST00000394943 SSRP1Q08945 709 aaKnown RBP8.1□□□□□ -1.11
LIMA1-202ENST00000394943 CCDC12Q8WUD4 166 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-202ENST00000394943 TRERF1Q96PN7 1200 aa8.1□□□□□ -1.11
LIMA1-202ENST00000394943 FOXP1Q9H334 677 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-202ENST00000394943 GPCPD1Q9NPB8 672 aa8.1□□□□□ -1.11
LIMA1-202ENST00000394943 MMP1P03956 469 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 GOLGA8HP0CJ92 632 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 SLC16A2P36021 539 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 PCNX4Q63HM2 1172 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 SNRNP48Q6IEG0 339 aaKnown RBP8.09□□□□□ -1.11
LIMA1-202ENST00000394943 NFXL1Q6ZNB6 911 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 OTOP1Q7RTM1 612 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 STK11IPQ8N1F8 1099 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 CCDC148Q8NFR7 591 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 UBA5Q9GZZ9 404 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 COL20A1Q9P218 1284 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 PCDHA4Q9UN74 947 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 SIP14410 1827 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 PTPDC1A2A3K4 754 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 TBC1D8O95759 1140 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 CYBAP13498 195 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 IFFO2Q5TF58 517 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 MICU3Q86XE3 530 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 ANKRD13CQ8N6S4 541 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 SLAIN1Q8ND83 568 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 KIFC2Q96AC6 838 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 MAML3Q96JK9 1138 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 CRISPLD2Q9H0B8 497 aa8.09□□□□□ -1.11
LIMA1-202ENST00000394943 CWC22Q9HCG8 908 aaKnown RBP8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms