RNA–Protein interactions for RNA: ENST00000392770.6

SCN3B-202, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 6,061 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-202ENST00000392770 LARP4BQ92615 738 aaKnown RBP18.35■□□□□ 0.53
SCN3B-202ENST00000392770 NUCKS1Q9H1E3 243 aaKnown RBP18.35■□□□□ 0.53
SCN3B-202ENST00000392770 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.35■□□□□ 0.53
SCN3B-202ENST00000392770 RABGAP1Q9Y3P9 1069 aa18.35■□□□□ 0.53
SCN3B-202ENST00000392770 CALRP27797 417 aaKnown RBP18.35■□□□□ 0.53
SCN3B-202ENST00000392770 VAV2P52735 878 aa18.35■□□□□ 0.53
SCN3B-202ENST00000392770 ARHGAP44Q17R89 818 aa18.35■□□□□ 0.53
SCN3B-202ENST00000392770 DEPTORQ8TB45 409 aa18.35■□□□□ 0.53
SCN3B-202ENST00000392770 MAN1B1Q9UKM7 699 aa18.35■□□□□ 0.53
SCN3B-202ENST00000392770 PDIA6Q15084 440 aa18.35■□□□□ 0.53
SCN3B-202ENST00000392770 LINC00116Q8NCU8 138 aa18.35■□□□□ 0.53
SCN3B-202ENST00000392770 TDRD7Q8NHU6 1098 aaKnown RBP18.35■□□□□ 0.53
SCN3B-202ENST00000392770 GSDMAQ96QA5 445 aa18.35■□□□□ 0.53
SCN3B-202ENST00000392770 FAM107BQ9H098 131 aa18.35■□□□□ 0.53
SCN3B-202ENST00000392770 LY9Q9HBG7 655 aa18.35■□□□□ 0.53
SCN3B-202ENST00000392770 COL3A1P02461 1466 aaPredicted RBP18.35■□□□□ 0.53
SCN3B-202ENST00000392770 ECE2O60344 883 aa18.34■□□□□ 0.53
SCN3B-202ENST00000392770 LRCH2Q5VUJ6 765 aa18.34■□□□□ 0.53
SCN3B-202ENST00000392770 LRRC8AQ8IWT6 810 aa18.34■□□□□ 0.53
SCN3B-202ENST00000392770 MROH7-TTC4A0A0A0MT08 1334 aa18.34■□□□□ 0.53
SCN3B-202ENST00000392770 A0A087WWV3 80 aa18.34■□□□□ 0.53
SCN3B-202ENST00000392770 USP14P54578 494 aa18.34■□□□□ 0.53
SCN3B-202ENST00000392770 NFIXQ14938 502 aa18.34■□□□□ 0.53
SCN3B-202ENST00000392770 ZNF34Q8IZ26 560 aa18.34■□□□□ 0.53
SCN3B-202ENST00000392770 SRPRBQ9Y5M8 271 aaKnown RBP18.34■□□□□ 0.53
SCN3B-202ENST00000392770 NMT2O60551 498 aa18.34■□□□□ 0.53
SCN3B-202ENST00000392770 CDC37Q16543 378 aaPredicted RBP18.34■□□□□ 0.53
SCN3B-202ENST00000392770 TMTC3Q6ZXV5 915 aa18.34■□□□□ 0.53
SCN3B-202ENST00000392770 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.34■□□□□ 0.53
SCN3B-202ENST00000392770 ZNF577Q9BSK1 485 aa18.34■□□□□ 0.53
SCN3B-202ENST00000392770 CAMTA2O94983 1202 aa18.33■□□□□ 0.53
SCN3B-202ENST00000392770 CACNB3P54284 484 aa18.33■□□□□ 0.53
SCN3B-202ENST00000392770 FAM26FQ5R3K3 315 aa18.33■□□□□ 0.53
SCN3B-202ENST00000392770 DGKHQ86XP1 1220 aa18.33■□□□□ 0.53
SCN3B-202ENST00000392770 SMYD4Q8IYR2 804 aaPredicted RBP18.33■□□□□ 0.53
SCN3B-202ENST00000392770 FAM84BQ96KN1 310 aaPredicted RBP18.33■□□□□ 0.53
SCN3B-202ENST00000392770 GJB4Q9NTQ9 266 aa18.33■□□□□ 0.53
SCN3B-202ENST00000392770 COL4A3BPQ9Y5P4 624 aa18.33■□□□□ 0.53
SCN3B-202ENST00000392770 CDC25BP30305 580 aa18.33■□□□□ 0.52
SCN3B-202ENST00000392770 GRIPAP1Q4V328 841 aa18.33■□□□□ 0.52
SCN3B-202ENST00000392770 MARCH10Q8NA82 808 aaPredicted RBP18.33■□□□□ 0.52
SCN3B-202ENST00000392770 CCDC26Q8TAB7 109 aa18.33■□□□□ 0.52
SCN3B-202ENST00000392770 IWS1Q96ST2 819 aa18.33■□□□□ 0.52
SCN3B-202ENST00000392770 MAK16Q9BXY0 300 aaKnown RBP18.33■□□□□ 0.52
SCN3B-202ENST00000392770 IFIH1Q9BYX4 1025 aaKnown RBP18.33■□□□□ 0.52
SCN3B-202ENST00000392770 TRIM6Q9C030 488 aaPredicted RBP18.33■□□□□ 0.52
SCN3B-202ENST00000392770 DCP1AQ9NPI6 582 aaPredicted RBP18.33■□□□□ 0.52
SCN3B-202ENST00000392770 REREQ9P2R6 1566 aa18.33■□□□□ 0.52
SCN3B-202ENST00000392770 PNMA6FA0A0J9YX94 578 aa18.33■□□□□ 0.52
SCN3B-202ENST00000392770 SNAP25P60880 206 aa18.33■□□□□ 0.52
SCN3B-202ENST00000392770 SH3GLB2Q9NR46 395 aa18.33■□□□□ 0.52
SCN3B-202ENST00000392770 CTTNBP2NLQ9P2B4 639 aa18.33■□□□□ 0.52
SCN3B-202ENST00000392770 RICTORQ6R327 1708 aa18.33■□□□□ 0.52
SCN3B-202ENST00000392770 TMED8Q6PL24 325 aaPredicted RBP18.33■□□□□ 0.52
SCN3B-202ENST00000392770 FAM178BQ8IXR5 827 aa18.33■□□□□ 0.52
SCN3B-202ENST00000392770 NAP1L3Q99457 506 aaPredicted RBP18.33■□□□□ 0.52
SCN3B-202ENST00000392770 CCDC77Q9BR77 488 aa18.32■□□□□ 0.52
SCN3B-202ENST00000392770 ATP2A1O14983 1001 aa18.32■□□□□ 0.52
SCN3B-202ENST00000392770 KIF4AO95239 1232 aa18.32■□□□□ 0.52
SCN3B-202ENST00000392770 KRT19P08727 400 aa18.32■□□□□ 0.52
SCN3B-202ENST00000392770 TNNI1P19237 187 aa18.32■□□□□ 0.52
SCN3B-202ENST00000392770 CIAPIN1Q6FI81 312 aa18.32■□□□□ 0.52
SCN3B-202ENST00000392770 UBL4BQ8N7F7 174 aa18.32■□□□□ 0.52
SCN3B-202ENST00000392770 GSG1L2A8MUP6 293 aa18.32■□□□□ 0.52
SCN3B-202ENST00000392770 AOC3Q16853 763 aa18.32■□□□□ 0.52
SCN3B-202ENST00000392770 UTP14CQ5TAP6 766 aaKnown RBP18.32■□□□□ 0.52
SCN3B-202ENST00000392770 DESI2Q9BSY9 194 aa18.32■□□□□ 0.52
SCN3B-202ENST00000392770 TRPC6Q9Y210 931 aa18.32■□□□□ 0.52
SCN3B-202ENST00000392770 GCFC2P16383 781 aaKnown RBP18.32■□□□□ 0.52
SCN3B-202ENST00000392770 ADAM9Q13443 819 aa18.32■□□□□ 0.52
SCN3B-202ENST00000392770 TXNRD1Q16881 649 aa18.32■□□□□ 0.52
SCN3B-202ENST00000392770 OR8K1Q8NGG5 319 aa18.32■□□□□ 0.52
SCN3B-202ENST00000392770 KCNG1Q9UIX4 513 aa18.32■□□□□ 0.52
SCN3B-202ENST00000392770 STK36Q9NRP7 1315 aa18.32■□□□□ 0.52
SCN3B-202ENST00000392770 COPB1P53618 953 aaKnown RBP18.32■□□□□ 0.52
SCN3B-202ENST00000392770 HDXQ7Z353 690 aa18.32■□□□□ 0.52
SCN3B-202ENST00000392770 CCDC25Q86WR0 208 aa18.32■□□□□ 0.52
SCN3B-202ENST00000392770 AGTPBP1Q9UPW5 1226 aa18.32■□□□□ 0.52
SCN3B-202ENST00000392770 NOD1Q9Y239 953 aa18.32■□□□□ 0.52
SCN3B-202ENST00000392770 PABPC4Q13310 644 aaKnown RBP eCLIP18.31■□□□□ 0.52
SCN3B-202ENST00000392770 ALX1Q15699 326 aa18.31■□□□□ 0.52
SCN3B-202ENST00000392770 C8orf74Q6P047 294 aa18.31■□□□□ 0.52
SCN3B-202ENST00000392770 METTL13Q8N6R0 699 aa18.31■□□□□ 0.52
SCN3B-202ENST00000392770 GOLGA5Q8TBA6 731 aa18.31■□□□□ 0.52
SCN3B-202ENST00000392770 MTRF1LQ9UGC7 380 aaKnown RBP18.31■□□□□ 0.52
SCN3B-202ENST00000392770 USP17L5A8MUK1 530 aa18.31■□□□□ 0.52
SCN3B-202ENST00000392770 TUBBP07437 444 aa18.31■□□□□ 0.52
SCN3B-202ENST00000392770 FOXP4Q8IVH2 680 aaPredicted RBP18.31■□□□□ 0.52
SCN3B-202ENST00000392770 ENAHQ8N8S7 591 aaPredicted RBP18.31■□□□□ 0.52
SCN3B-202ENST00000392770 STMN4Q9H169 189 aaPredicted RBP18.31■□□□□ 0.52
SCN3B-202ENST00000392770 ZNF609O15014 1411 aa18.31■□□□□ 0.52
SCN3B-202ENST00000392770 SLFN14P0C7P3 912 aa18.31■□□□□ 0.52
SCN3B-202ENST00000392770 CNOT6LQ96LI5 555 aaKnown RBP18.31■□□□□ 0.52
SCN3B-202ENST00000392770 ARMCX3Q9UH62 379 aaPredicted RBP18.31■□□□□ 0.52
SCN3B-202ENST00000392770 FAM170AA1A519 330 aa18.31■□□□□ 0.52
SCN3B-202ENST00000392770 SMIM23A6NLE4 172 aa18.31■□□□□ 0.52
SCN3B-202ENST00000392770 ZNF658Q5TYW1 1059 aaPredicted RBP18.31■□□□□ 0.52
SCN3B-202ENST00000392770 VPS18Q9P253 973 aa18.31■□□□□ 0.52
SCN3B-202ENST00000392770 NT5C2P49902 561 aa18.31■□□□□ 0.52
SCN3B-202ENST00000392770 PAIP2Q9BPZ3 127 aaKnown RBP18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms