RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 CACNB1Q02641 598 aaPredicted RBP11.59□□□□□ -0.55
COL6A3-205ENST00000392004 BAATQ14032 418 aaPredicted RBP11.59□□□□□ -0.55
COL6A3-205ENST00000392004 FILIP1Q7Z7B0 1213 aa11.59□□□□□ -0.55
COL6A3-205ENST00000392004 RAET1EQ8TD07 263 aa11.59□□□□□ -0.55
COL6A3-205ENST00000392004 TTC14Q96N46 770 aa11.59□□□□□ -0.55
COL6A3-205ENST00000392004 VCPKMTQ9H867 229 aa11.59□□□□□ -0.55
COL6A3-205ENST00000392004 SPC25Q9HBM1 224 aa11.59□□□□□ -0.55
COL6A3-205ENST00000392004 PTGDRQ13258 359 aa11.58□□□□□ -0.55
COL6A3-205ENST00000392004 ALX1Q15699 326 aa11.58□□□□□ -0.55
COL6A3-205ENST00000392004 RILPL1Q5EBL4 403 aa11.58□□□□□ -0.55
COL6A3-205ENST00000392004 KRT25Q7Z3Z0 450 aa11.58□□□□□ -0.55
COL6A3-205ENST00000392004 NOSTRINQ8IVI9 506 aa11.58□□□□□ -0.55
COL6A3-205ENST00000392004 SLC5A4Q9NY91 659 aa11.58□□□□□ -0.55
COL6A3-205ENST00000392004 PRR12Q9ULL5 1215 aa11.58□□□□□ -0.55
COL6A3-205ENST00000392004 MYSM1Q5VVJ2 828 aa11.58□□□□□ -0.56
COL6A3-205ENST00000392004 TAF3Q5VWG9 929 aa11.58□□□□□ -0.56
COL6A3-205ENST00000392004 CHADLQ6NUI6 762 aa11.58□□□□□ -0.56
COL6A3-205ENST00000392004 SLC30A10Q6XR72 485 aa11.58□□□□□ -0.56
COL6A3-205ENST00000392004 TMTC3Q6ZXV5 915 aa11.58□□□□□ -0.56
COL6A3-205ENST00000392004 ERO1BQ86YB8 467 aa11.58□□□□□ -0.56
COL6A3-205ENST00000392004 DOT1LQ8TEK3 1739 aa11.58□□□□□ -0.56
COL6A3-205ENST00000392004 CAPN15O75808 1086 aa11.58□□□□□ -0.56
COL6A3-205ENST00000392004 SHMT1P34896 483 aa11.58□□□□□ -0.56
COL6A3-205ENST00000392004 GNPTABQ3T906 1256 aa11.58□□□□□ -0.56
COL6A3-205ENST00000392004 ZFYVE27Q5T4F4 411 aa11.58□□□□□ -0.56
COL6A3-205ENST00000392004 FASTKD5Q7L8L6 764 aaKnown RBP11.58□□□□□ -0.56
COL6A3-205ENST00000392004 BLZF1Q9H2G9 400 aa11.58□□□□□ -0.56
COL6A3-205ENST00000392004 SEPT11Q9NVA2 429 aaKnown RBP11.58□□□□□ -0.56
COL6A3-205ENST00000392004 DDX25Q9UHL0 483 aaKnown RBP11.58□□□□□ -0.56
COL6A3-205ENST00000392004 ZBTB5O15062 677 aa11.57□□□□□ -0.56
COL6A3-205ENST00000392004 PDHBP11177 359 aa11.57□□□□□ -0.56
COL6A3-205ENST00000392004 IFNAR1P17181 557 aa11.57□□□□□ -0.56
COL6A3-205ENST00000392004 U2AF2P26368 475 aaKnown RBP eCLIP11.57□□□□□ -0.56
COL6A3-205ENST00000392004 USP50Q70EL3 339 aaPredicted RBP11.57□□□□□ -0.56
COL6A3-205ENST00000392004 NEK8Q86SG6 692 aa11.57□□□□□ -0.56
COL6A3-205ENST00000392004 TMEM87AQ8NBN3 555 aa11.57□□□□□ -0.56
COL6A3-205ENST00000392004 KCNG4Q8TDN1 519 aa11.57□□□□□ -0.56
COL6A3-205ENST00000392004 MRPS27Q92552 414 aaKnown RBP11.57□□□□□ -0.56
COL6A3-205ENST00000392004 NAT10Q9H0A0 1025 aaKnown RBP11.57□□□□□ -0.56
COL6A3-205ENST00000392004 FAM205CA6NFA0 338 aa11.57□□□□□ -0.56
COL6A3-205ENST00000392004 DEFB115Q30KQ5 88 aa11.57□□□□□ -0.56
COL6A3-205ENST00000392004 MCF2L2Q86YR7 1114 aa11.57□□□□□ -0.56
COL6A3-205ENST00000392004 KRI1Q8N9T8 703 aaKnown RBP11.57□□□□□ -0.56
COL6A3-205ENST00000392004 IGDCC4Q8TDY8 1250 aa11.57□□□□□ -0.56
COL6A3-205ENST00000392004 PPP1R13LQ8WUF5 828 aa11.57□□□□□ -0.56
COL6A3-205ENST00000392004 CPLX3Q8WVH0 158 aa11.57□□□□□ -0.56
COL6A3-205ENST00000392004 CLIC4Q9Y696 253 aa11.57□□□□□ -0.56
COL6A3-205ENST00000392004 PNMA6FA0A0J9YX94 578 aa11.57□□□□□ -0.56
COL6A3-205ENST00000392004 NAP1L1P55209 391 aaKnown RBP11.57□□□□□ -0.56
COL6A3-205ENST00000392004 KIAA1524Q8TCG1 905 aa11.57□□□□□ -0.56
COL6A3-205ENST00000392004 LLPHQ9BRT6 129 aaKnown RBP11.57□□□□□ -0.56
COL6A3-205ENST00000392004 ABCB11O95342 1321 aa11.57□□□□□ -0.56
COL6A3-205ENST00000392004 USP8P40818 1118 aa11.57□□□□□ -0.56
COL6A3-205ENST00000392004 MIER3Q7Z3K6 550 aa11.57□□□□□ -0.56
COL6A3-205ENST00000392004 ORC4O43929 436 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 COBLO75128 1261 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 FAM13AO94988 1023 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 TPM1P09493 284 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 BACE1P56817 501 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 ZNF543Q08ER8 600 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 NBPF11Q86T75 865 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 FAM160B2Q86V87 743 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 SMARCE1Q969G3 411 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 RNF26Q9BY78 433 aaPredicted RBP11.56□□□□□ -0.56
COL6A3-205ENST00000392004 MTMR6Q9Y217 621 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 ARHGEF35A5YM69 484 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 VCAM1P19320 739 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 SBK1Q52WX2 424 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 RDH13Q8NBN7 331 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 ZNF384Q8TF68 577 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 ZNF577Q9BSK1 485 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 PYCARDQ9ULZ3 195 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 CICQ96RK0 1608 aaPredicted RBP11.56□□□□□ -0.56
COL6A3-205ENST00000392004 FCER1AP12319 257 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 PPP2R5BQ15173 497 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 BRAPQ7Z569 592 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 CCDC112Q8NEF3 446 aa11.56□□□□□ -0.56
COL6A3-205ENST00000392004 FAM49AQ9H0Q0 323 aaPredicted RBP11.56□□□□□ -0.56
COL6A3-205ENST00000392004 PLCH1Q4KWH8 1693 aa11.55□□□□□ -0.56
COL6A3-205ENST00000392004 LRCH2Q5VUJ6 765 aa11.55□□□□□ -0.56
COL6A3-205ENST00000392004 DPH6Q7L8W6 267 aa11.55□□□□□ -0.56
COL6A3-205ENST00000392004 EXOC1Q9NV70 894 aa11.55□□□□□ -0.56
COL6A3-205ENST00000392004 OGFRQ9NZT2 677 aa11.55□□□□□ -0.56
COL6A3-205ENST00000392004 SALL3Q9BXA9 1300 aa11.55□□□□□ -0.56
COL6A3-205ENST00000392004 XIRP1Q702N8 1843 aaKnown RBP11.55□□□□□ -0.56
COL6A3-205ENST00000392004 IGSF3O75054 1194 aa11.55□□□□□ -0.56
COL6A3-205ENST00000392004 CETPP11597 493 aa11.55□□□□□ -0.56
COL6A3-205ENST00000392004 HIRAP54198 1017 aaPredicted RBP11.55□□□□□ -0.56
COL6A3-205ENST00000392004 NELFCDQ8IXH7 590 aa11.55□□□□□ -0.56
COL6A3-205ENST00000392004 SMC1BQ8NDV3 1235 aa11.55□□□□□ -0.56
COL6A3-205ENST00000392004 RBM46Q8TBY0 533 aaKnown RBP11.55□□□□□ -0.56
COL6A3-205ENST00000392004 MMP19Q99542 508 aa11.55□□□□□ -0.56
COL6A3-205ENST00000392004 PCDHB6Q9Y5E3 794 aa11.55□□□□□ -0.56
COL6A3-205ENST00000392004 PDHXO00330 501 aa11.55□□□□□ -0.56
COL6A3-205ENST00000392004 XKR9Q5GH70 373 aa11.55□□□□□ -0.56
COL6A3-205ENST00000392004 C7orf43Q8WVR3 580 aa11.55□□□□□ -0.56
COL6A3-205ENST00000392004 TBC1D5Q92609 795 aa11.55□□□□□ -0.56
COL6A3-205ENST00000392004 ZNF592Q92610 1267 aa11.55□□□□□ -0.56
COL6A3-205ENST00000392004 P2RX7Q99572 595 aaKnown RBP11.55□□□□□ -0.56
COL6A3-205ENST00000392004 TEX13BQ9BXU2 312 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms