RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 DDAH1O94760 285 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 SF3A3Q12874 501 aaKnown RBP eCLIP13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 FBXO11Q86XK2 927 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 CAPS2Q9BXY5 557 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 PLXNC1O60486 1568 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 H7C0C1 242 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 BUB1O43683 1085 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 ALAS1P13196 640 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 ATP5OP48047 213 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 CFAP61Q8NHU2 1237 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 CHMP6Q96FZ7 201 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 RIPOR2Q9Y4F9 1068 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 MAD1L1Q9Y6D9 718 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 CAPN7Q9Y6W3 813 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 MED23Q9ULK4 1368 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 INHBAP08476 426 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 NSFP46459 744 aaKnown RBP13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 SESTD1Q86VW0 696 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 TACO1Q9BSH4 297 aaKnown RBP13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 MAP3K19Q56UN5 1328 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 DLATP10515 647 aaKnown RBP13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 KRT10P13645 584 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 MFAP3P55082 362 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 STX1BP61266 288 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 MYL7Q01449 175 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 TTBK2Q6IQ55 1244 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 ANKRD36BP1Q96IX9 119 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 DRC3Q9H069 523 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 KIAA1468Q9P260 1216 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 KIF24Q5T7B8 1368 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 ABCD1P33897 745 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 CASP2P42575 452 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 MFSD14BQ5SR56 506 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 KLHDC4Q8TBB5 520 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 CCDC124Q96CT7 223 aaKnown RBP13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 FAM81BQ96LP2 452 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 STAMQ92783 540 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 hCG_1642624A0A1W2PR95 340 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 ATP5JP18859 108 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 IQCB1Q15051 598 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 CERKLQ49MI3 558 aaPredicted RBP13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 PPP1R2P3Q6NXS1 205 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 EP400NLQ6ZTU2 488 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 LRRC43Q8N309 656 aa13.96□□□□□ -0.17
CCDC88C-204ENST00000389857 NCKAP5LQ9HCH0 1330 aa13.96□□□□□ -0.18
CCDC88C-204ENST00000389857 PFKFB1P16118 471 aa13.96□□□□□ -0.18
CCDC88C-204ENST00000389857 IL9RQ01113 521 aa13.96□□□□□ -0.18
CCDC88C-204ENST00000389857 RFX6Q8HWS3 928 aa13.96□□□□□ -0.18
CCDC88C-204ENST00000389857 ANKRD35Q8N283 1001 aa13.96□□□□□ -0.18
CCDC88C-204ENST00000389857 TM6SF1Q9BZW5 370 aa13.96□□□□□ -0.18
CCDC88C-204ENST00000389857 PLEKHA4Q9H4M7 779 aa13.96□□□□□ -0.18
CCDC88C-204ENST00000389857 DISC1Q9NRI5 854 aa13.96□□□□□ -0.18
CCDC88C-204ENST00000389857 PPP1R9AQ9ULJ8 1098 aa13.96□□□□□ -0.18
CCDC88C-204ENST00000389857 ZNF148Q9UQR1 794 aa13.96□□□□□ -0.18
CCDC88C-204ENST00000389857 RPN1P04843 607 aaKnown RBP13.96□□□□□ -0.18
CCDC88C-204ENST00000389857 POLR2FP61218 127 aaKnown RBP13.96□□□□□ -0.18
CCDC88C-204ENST00000389857 SSH2Q76I76 1423 aa13.96□□□□□ -0.18
CCDC88C-204ENST00000389857 ARHGEF10O15013 1369 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 GTPBP6O43824 516 aaPredicted RBP13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 PTK2Q05397 1052 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 TSTA3Q13630 321 aaPredicted RBP13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 HSP90AA5PQ58FG0 334 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 METTL23Q86XA0 190 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 ASXL2Q76L83 1435 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 SOS2Q07890 1332 aaPredicted RBP13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 SGK1O00141 431 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 GPC4O75487 556 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 RNASELQ05823 741 aaKnown RBP13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 PPP2R5AQ15172 486 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 STAG1Q8WVM7 1258 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 ZNF233A6NK53 670 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 ATP2B4P23634 1241 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 LONP1P36776 959 aaKnown RBP13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 EXOC8Q8IYI6 725 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 PPM1KQ8N3J5 372 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 NUB1Q9Y5A7 615 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 JAK2O60674 1132 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 PCP11498 1178 aaKnown RBP13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 GTF2IP78347 998 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 DPY19L2Q6NUT2 758 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 NOP9Q86U38 636 aaKnown RBP13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 SLC12A6Q9UHW9 1150 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 NCAPG2Q86XI2 1143 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 MED4Q9NPJ6 270 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 PCDHB4Q9Y5E5 795 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 LRRIQ4A6NIV6 560 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 EFCAB8A8MWE9 144 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 GADD45BO75293 160 aaPredicted RBP13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 PLA2G4DQ86XP0 818 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 DCPSQ96C86 337 aaKnown RBP13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 DPH5Q9H2P9 285 aa13.95□□□□□ -0.18
CCDC88C-204ENST00000389857 ATP8B3O60423 1300 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 VPS41P49754 854 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 KPNA2P52292 529 aaKnown RBP13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 IL1RL1Q01638 556 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 ADAM9Q13443 819 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 GNGT2O14610 69 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 MAP2K2P36507 400 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 YWHAGP61981 247 aaKnown RBP eCLIP13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 CAPN12Q6ZSI9 719 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms