RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 DENND2CQ68D51 928 aa7.23□□□□□ -1.25
SMC1A-202ENST00000375340 MYOCDQ8IZQ8 938 aa7.23□□□□□ -1.25
SMC1A-202ENST00000375340 ANKRD42Q8N9B4 389 aa7.23□□□□□ -1.25
SMC1A-202ENST00000375340 ALDH8A1Q9H2A2 487 aaPredicted RBP7.23□□□□□ -1.25
SMC1A-202ENST00000375340 MLXIPQ9HAP2 919 aa7.23□□□□□ -1.25
SMC1A-202ENST00000375340 FAM205CA6NFA0 338 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 CCDC169A6NNP5 214 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 EIF4A3P38919 411 aaKnown RBP7.22□□□□□ -1.25
SMC1A-202ENST00000375340 FNBP4Q8N3X1 1017 aaPredicted RBP7.22□□□□□ -1.25
SMC1A-202ENST00000375340 PTPN22Q9Y2R2 807 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 SLFN14P0C7P3 912 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 RPL13P26373 211 aaKnown RBP7.22□□□□□ -1.25
SMC1A-202ENST00000375340 SMCR8Q8TEV9 937 aaPredicted RBP7.22□□□□□ -1.25
SMC1A-202ENST00000375340 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.22□□□□□ -1.25
SMC1A-202ENST00000375340 KLRF2D3W0D1 207 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 CETN3O15182 167 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 NEBLO76041 1014 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 NDUFA10O95299 355 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 ERCC5P28715 1186 aaPredicted RBP7.22□□□□□ -1.25
SMC1A-202ENST00000375340 EXOSC10Q01780 885 aaKnown RBP7.22□□□□□ -1.25
SMC1A-202ENST00000375340 NEK8Q86SG6 692 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 MB21D1Q8N884 522 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 FAM133AQ8N9E0 248 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 LZTS2Q9BRK4 669 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 MED4Q9NPJ6 270 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 PALLDQ8WX93 1383 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 PLCB3Q01970 1234 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 MECOMQ03112 1051 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 CCDC6Q16204 474 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 ENOX1Q8TC92 643 aaKnown RBP7.22□□□□□ -1.25
SMC1A-202ENST00000375340 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.22□□□□□ -1.25
SMC1A-202ENST00000375340 TSKSQ9UJT2 592 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 PCDHB13Q9Y5F0 798 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 DESP17661 470 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 GGCXP38435 758 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 KCTD1Q719H9 257 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 PPP1R14CQ8TAE6 165 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 P2RX5Q93086 422 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 ADGRL3Q9HAR2 1447 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 PPP2R5BQ15173 497 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 KRT71Q3SY84 523 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 HS2ST1Q7LGA3 356 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 TBC1D31Q96DN5 1066 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 GSDMAQ96QA5 445 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 PIGSQ96S52 555 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 PP2D1A8MPX8 630 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 MEIS1O00470 390 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 WDR78Q5VTH9 848 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 HAUS3Q68CZ6 603 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 EPB41L5Q9HCM4 733 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 DNM3Q9UQ16 869 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 SLC16A2P36021 539 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 UBE2SQ16763 222 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 LRRN4CLQ8ND94 238 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 BCAS4Q8TDM0 211 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 RNF26Q9BY78 433 aaPredicted RBP7.22□□□□□ -1.25
SMC1A-202ENST00000375340 TRIM10Q9UDY6 481 aa7.22□□□□□ -1.25
SMC1A-202ENST00000375340 PPP1R2P41236 205 aa7.21□□□□□ -1.25
SMC1A-202ENST00000375340 CCDC105Q8IYK2 499 aa7.21□□□□□ -1.25
SMC1A-202ENST00000375340 CCDC63Q8NA47 563 aa7.21□□□□□ -1.25
SMC1A-202ENST00000375340 PIGBQ92521 554 aa7.21□□□□□ -1.25
SMC1A-202ENST00000375340 AP1M1Q9BXS5 423 aa7.21□□□□□ -1.25
SMC1A-202ENST00000375340 PRPF3O43395 683 aaKnown RBP7.21□□□□□ -1.25
SMC1A-202ENST00000375340 MRPL12P52815 198 aaKnown RBP7.21□□□□□ -1.25
SMC1A-202ENST00000375340 CALCOCO2Q13137 446 aa7.21□□□□□ -1.25
SMC1A-202ENST00000375340 ACTN2P35609 894 aa7.21□□□□□ -1.25
SMC1A-202ENST00000375340 WDR66Q8TBY9 1149 aa7.21□□□□□ -1.25
SMC1A-202ENST00000375340 CPVLQ9H3G5 476 aa7.21□□□□□ -1.25
SMC1A-202ENST00000375340 UBE2Q2LH0YL09 131 aa7.21□□□□□ -1.26
SMC1A-202ENST00000375340 GFPT1Q06210 699 aaPredicted RBP7.21□□□□□ -1.26
SMC1A-202ENST00000375340 STRBPQ96SI9 672 aaKnown RBP7.21□□□□□ -1.26
SMC1A-202ENST00000375340 RBM26Q5T8P6 1007 aaKnown RBP7.21□□□□□ -1.26
SMC1A-202ENST00000375340 TTC16Q8NEE8 873 aa7.21□□□□□ -1.26
SMC1A-202ENST00000375340 RSRC1Q96IZ7 334 aaKnown RBP7.21□□□□□ -1.26
SMC1A-202ENST00000375340 THAP9Q9H5L6 903 aa7.21□□□□□ -1.26
SMC1A-202ENST00000375340 HAUS4Q9H6D7 363 aa7.21□□□□□ -1.26
SMC1A-202ENST00000375340 TMEM94Q12767 1356 aa7.21□□□□□ -1.26
SMC1A-202ENST00000375340 ZNF185O15231 689 aa7.21□□□□□ -1.26
SMC1A-202ENST00000375340 MYCLP12524 364 aaPredicted RBP7.21□□□□□ -1.26
SMC1A-202ENST00000375340 PRCPP42785 496 aa7.21□□□□□ -1.26
SMC1A-202ENST00000375340 UBXN2AP68543 259 aa7.21□□□□□ -1.26
SMC1A-202ENST00000375340 SUSD4Q5VX71 490 aa7.21□□□□□ -1.26
SMC1A-202ENST00000375340 INTS8Q75QN2 995 aaKnown RBP7.21□□□□□ -1.26
SMC1A-202ENST00000375340 COA7Q96BR5 231 aa7.21□□□□□ -1.26
SMC1A-202ENST00000375340 PSTPIP2Q9H939 334 aa7.21□□□□□ -1.26
SMC1A-202ENST00000375340 MTUS1Q9ULD2 1270 aa7.21□□□□□ -1.26
SMC1A-202ENST00000375340 KIAA1024Q9UPX6 916 aa7.21□□□□□ -1.26
SMC1A-202ENST00000375340 TCHHQ07283 1943 aa7.21□□□□□ -1.26
SMC1A-202ENST00000375340 FLOT1O75955 427 aa7.21□□□□□ -1.26
SMC1A-202ENST00000375340 SYCE1Q8N0S2 351 aa7.21□□□□□ -1.26
SMC1A-202ENST00000375340 IRX2Q9BZI1 471 aaPredicted RBP7.21□□□□□ -1.26
SMC1A-202ENST00000375340 ASIC3Q9UHC3 531 aa7.21□□□□□ -1.26
SMC1A-202ENST00000375340 RFX7Q2KHR2 1363 aa7.21□□□□□ -1.26
SMC1A-202ENST00000375340 SLC1A4P43007 532 aa7.21□□□□□ -1.26
SMC1A-202ENST00000375340 STAG1Q8WVM7 1258 aa7.21□□□□□ -1.26
SMC1A-202ENST00000375340 ATP1A1P05023 1023 aaKnown RBP7.2□□□□□ -1.26
SMC1A-202ENST00000375340 IRX5P78411 483 aaPredicted RBP7.2□□□□□ -1.26
SMC1A-202ENST00000375340 ATP11AP98196 1134 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 PNMA8AQ86V59 439 aaPredicted RBP7.2□□□□□ -1.26
SMC1A-202ENST00000375340 TTLL11Q8NHH1 800 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms