RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 TRIM58Q8NG06 486 aa23.59■■□□□ 1.37
UPF3A-202ENST00000375299 FAM205AQ6ZU69 1335 aa23.59■■□□□ 1.37
UPF3A-202ENST00000375299 GOLGA8KD6RF30 607 aa23.58■■□□□ 1.37
UPF3A-202ENST00000375299 CCT5P48643 541 aa23.58■■□□□ 1.37
UPF3A-202ENST00000375299 PCMTD1Q96MG8 357 aaPredicted RBP23.58■■□□□ 1.37
UPF3A-202ENST00000375299 KBTBD4Q9NVX7 518 aa23.58■■□□□ 1.37
UPF3A-202ENST00000375299 LRWD1Q9UFC0 647 aa23.58■■□□□ 1.37
UPF3A-202ENST00000375299 MYH1P12882 1939 aa23.58■■□□□ 1.37
UPF3A-202ENST00000375299 A0A1W2PQJ5 194 aa23.58■■□□□ 1.37
UPF3A-202ENST00000375299 CHRNDQ07001 517 aa23.58■■□□□ 1.37
UPF3A-202ENST00000375299 FIGNQ5HY92 759 aa23.58■■□□□ 1.37
UPF3A-202ENST00000375299 GBP6Q6ZN66 633 aa23.58■■□□□ 1.37
UPF3A-202ENST00000375299 CNOT6LQ96LI5 555 aaKnown RBP23.58■■□□□ 1.37
UPF3A-202ENST00000375299 CAPS2Q9BXY5 557 aa23.58■■□□□ 1.37
UPF3A-202ENST00000375299 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.58■■□□□ 1.37
UPF3A-202ENST00000375299 COL14A1Q05707 1796 aaKnown RBP23.57■■□□□ 1.36
UPF3A-202ENST00000375299 PP2D1A8MPX8 630 aa23.57■■□□□ 1.36
UPF3A-202ENST00000375299 TACC1O75410 805 aa23.57■■□□□ 1.36
UPF3A-202ENST00000375299 SPA17Q15506 151 aa23.57■■□□□ 1.36
UPF3A-202ENST00000375299 SH3GL2Q99962 352 aa23.57■■□□□ 1.36
UPF3A-202ENST00000375299 ZNF263O14978 683 aa23.57■■□□□ 1.36
UPF3A-202ENST00000375299 NMT2O60551 498 aa23.57■■□□□ 1.36
UPF3A-202ENST00000375299 CCNE1P24864 410 aa23.57■■□□□ 1.36
UPF3A-202ENST00000375299 EZH2Q15910 746 aaKnown RBP23.57■■□□□ 1.36
UPF3A-202ENST00000375299 INTS5Q6P9B9 1019 aaKnown RBP23.57■■□□□ 1.36
UPF3A-202ENST00000375299 FAM114A1Q8IWE2 563 aa23.57■■□□□ 1.36
UPF3A-202ENST00000375299 MICALL1Q8N3F8 863 aa23.57■■□□□ 1.36
UPF3A-202ENST00000375299 P2RX5Q93086 422 aa23.57■■□□□ 1.36
UPF3A-202ENST00000375299 RRP36Q96EU6 259 aaKnown RBP23.57■■□□□ 1.36
UPF3A-202ENST00000375299 LRRC1Q9BTT6 524 aa23.57■■□□□ 1.36
UPF3A-202ENST00000375299 BICDL2A1A5D9 508 aa23.56■■□□□ 1.36
UPF3A-202ENST00000375299 EBAG9O00559 213 aa23.56■■□□□ 1.36
UPF3A-202ENST00000375299 USO1O60763 962 aaKnown RBP23.56■■□□□ 1.36
UPF3A-202ENST00000375299 CCDC96Q2M329 555 aa23.56■■□□□ 1.36
UPF3A-202ENST00000375299 CCDC152Q4G0S7 254 aa23.56■■□□□ 1.36
UPF3A-202ENST00000375299 CCDC42Q96M95 316 aa23.56■■□□□ 1.36
UPF3A-202ENST00000375299 CCSER1Q9C0I3 900 aa23.56■■□□□ 1.36
UPF3A-202ENST00000375299 PCDHA4Q9UN74 947 aa23.56■■□□□ 1.36
UPF3A-202ENST00000375299 CAPN6Q9Y6Q1 641 aa23.56■■□□□ 1.36
UPF3A-202ENST00000375299 ZNF804BA4D1E1 1349 aa23.56■■□□□ 1.36
UPF3A-202ENST00000375299 LAMB1P07942 1786 aa23.56■■□□□ 1.36
UPF3A-202ENST00000375299 COL1A1P02452 1464 aaPredicted RBP23.56■■□□□ 1.36
UPF3A-202ENST00000375299 EIF3HO15372 352 aaKnown RBP eCLIP23.56■■□□□ 1.365e-6■■■□□ 14.9
UPF3A-202ENST00000375299 ORC4O43929 436 aa23.56■■□□□ 1.36
UPF3A-202ENST00000375299 PRLRP16471 622 aa23.56■■□□□ 1.36
UPF3A-202ENST00000375299 UBA7P41226 1012 aa23.56■■□□□ 1.36
UPF3A-202ENST00000375299 MTIF2P46199 727 aaKnown RBP23.56■■□□□ 1.36
UPF3A-202ENST00000375299 SMCR8Q8TEV9 937 aaPredicted RBP23.56■■□□□ 1.36
UPF3A-202ENST00000375299 HDAC7Q8WUI4 952 aa23.56■■□□□ 1.36
UPF3A-202ENST00000375299 ERGIC2Q96RQ1 377 aa23.56■■□□□ 1.36
UPF3A-202ENST00000375299 SH2D4AQ9H788 454 aa23.56■■□□□ 1.36
UPF3A-202ENST00000375299 YY1AP1Q9H869 796 aa23.56■■□□□ 1.36
UPF3A-202ENST00000375299 DMGDHQ9UI17 866 aaKnown RBP23.56■■□□□ 1.36
UPF3A-202ENST00000375299 GRIN2DO15399 1336 aa23.56■■□□□ 1.36
UPF3A-202ENST00000375299 OPA1O60313 960 aa23.55■■□□□ 1.36
UPF3A-202ENST00000375299 MIIPQ5JXC2 388 aa23.55■■□□□ 1.36
UPF3A-202ENST00000375299 SPATA4Q8NEY3 305 aa23.55■■□□□ 1.36
UPF3A-202ENST00000375299 HINFPQ9BQA5 517 aa23.55■■□□□ 1.36
UPF3A-202ENST00000375299 NOC4LQ9BVI4 516 aaKnown RBP23.55■■□□□ 1.36
UPF3A-202ENST00000375299 USP17L12C9JPN9 530 aa23.55■■□□□ 1.36
UPF3A-202ENST00000375299 USP17L21D6R901 530 aa23.55■■□□□ 1.36
UPF3A-202ENST00000375299 GUCY2CP25092 1073 aa23.55■■□□□ 1.36
UPF3A-202ENST00000375299 KRT26Q7Z3Y9 468 aa23.55■■□□□ 1.36
UPF3A-202ENST00000375299 SUGP1Q8IWZ8 645 aaKnown RBP23.55■■□□□ 1.36
UPF3A-202ENST00000375299 RASGRP4Q8TDF6 673 aa23.55■■□□□ 1.36
UPF3A-202ENST00000375299 BCAS4Q8TDM0 211 aa23.55■■□□□ 1.36
UPF3A-202ENST00000375299 PLIN2Q99541 437 aa23.55■■□□□ 1.36
UPF3A-202ENST00000375299 TMEM60Q9H2L4 133 aa23.55■■□□□ 1.36
UPF3A-202ENST00000375299 FAM169AQ9Y6X4 670 aa23.55■■□□□ 1.36
UPF3A-202ENST00000375299 EPHB4P54760 987 aa23.54■■□□□ 1.36
UPF3A-202ENST00000375299 GNGT1P63211 74 aa23.54■■□□□ 1.36
UPF3A-202ENST00000375299 ANKRD40Q6AI12 368 aa23.54■■□□□ 1.36
UPF3A-202ENST00000375299 ZSCAN29Q8IWY8 852 aaPredicted RBP23.54■■□□□ 1.36
UPF3A-202ENST00000375299 SH3GLB2Q9NR46 395 aa23.54■■□□□ 1.36
UPF3A-202ENST00000375299 PHLPP1O60346 1717 aa23.54■■□□□ 1.36
UPF3A-202ENST00000375299 DOT1LQ8TEK3 1739 aa23.54■■□□□ 1.36
UPF3A-202ENST00000375299 SHTN1A0MZ66 631 aa23.54■■□□□ 1.36
UPF3A-202ENST00000375299 FAM47AQ5JRC9 791 aa23.54■■□□□ 1.36
UPF3A-202ENST00000375299 IQCDQ96DY2 449 aa23.54■■□□□ 1.36
UPF3A-202ENST00000375299 EEF2KMTQ96G04 330 aa23.54■■□□□ 1.36
UPF3A-202ENST00000375299 EHD4Q9H223 541 aa23.54■■□□□ 1.36
UPF3A-202ENST00000375299 CCDC87Q9NVE4 849 aa23.54■■□□□ 1.36
UPF3A-202ENST00000375299 ERLIN2O94905 339 aa23.53■■□□□ 1.36
UPF3A-202ENST00000375299 PLEKP08567 350 aaPredicted RBP23.53■■□□□ 1.36
UPF3A-202ENST00000375299 EPB41P11171 864 aaKnown RBP23.53■■□□□ 1.36
UPF3A-202ENST00000375299 KIF5BP33176 963 aa23.53■■□□□ 1.36
UPF3A-202ENST00000375299 FKBP15Q5T1M5 1219 aa23.53■■□□□ 1.36
UPF3A-202ENST00000375299 MMS22LQ6ZRQ5 1243 aa23.53■■□□□ 1.36
UPF3A-202ENST00000375299 ANKRD18AQ8IVF6 992 aa23.53■■□□□ 1.36
UPF3A-202ENST00000375299 LRRC15Q8TF66 581 aa23.53■■□□□ 1.36
UPF3A-202ENST00000375299 GPKOWQ92917 476 aaPredicted RBP eCLIP23.53■■□□□ 1.36
UPF3A-202ENST00000375299 CCDC47Q96A33 483 aaKnown RBP23.53■■□□□ 1.36
UPF3A-202ENST00000375299 OSBPL9Q96SU4 736 aa23.53■■□□□ 1.36
UPF3A-202ENST00000375299 IFIH1Q9BYX4 1025 aaKnown RBP23.53■■□□□ 1.36
UPF3A-202ENST00000375299 MLXIPQ9HAP2 919 aa23.53■■□□□ 1.36
UPF3A-202ENST00000375299 MAGEF1Q9HAY2 307 aa23.53■■□□□ 1.36
UPF3A-202ENST00000375299 HYOU1Q9Y4L1 999 aa23.53■■□□□ 1.36
UPF3A-202ENST00000375299 PCDHA13Q9Y5I0 950 aa23.53■■□□□ 1.36
UPF3A-202ENST00000375299 CCDC194A0A1B0GVG4 234 aa23.52■■□□□ 1.36
UPF3A-202ENST00000375299 TCP1P17987 556 aaKnown RBP23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms