RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 COL4A3BPQ9Y5P4 624 aa9.91□□□□□ -0.82
SYNE1-205ENST00000367251 PSMD2Q13200 908 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 DENND2CQ68D51 928 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 KRT26Q7Z3Y9 468 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 CCDC170Q8IYT3 715 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 ZNF579Q8NAF0 562 aaKnown RBP9.9□□□□□ -0.82
SYNE1-205ENST00000367251 ZFP91Q96JP5 570 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-205ENST00000367251 PCDHA12Q9UN75 941 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 ABCA9Q8IUA7 1624 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 SMIM23A6NLE4 172 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 PHKA1P46020 1223 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 C10orf76Q5T2E6 689 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 BBOF1Q8ND07 529 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 CCDC17Q96LX7 622 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 FAM193BQ96PV7 902 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-205ENST00000367251 IRAK4Q9NWZ3 460 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 CHMP2AO43633 222 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 TRPC3Q13507 836 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 GPATCH4Q5T3I0 446 aaKnown RBP9.9□□□□□ -0.82
SYNE1-205ENST00000367251 CEP57Q86XR8 500 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 ARHGAP24Q8N264 748 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 TSC1Q92574 1164 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 DDX25Q9UHL0 483 aaKnown RBP9.9□□□□□ -0.82
SYNE1-205ENST00000367251 MAN1B1Q9UKM7 699 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 ZSCAN26Q16670 478 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 TSGA10IPQ3SY00 556 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 NLRX1Q86UT6 975 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 CCDC125Q86Z20 511 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 KLHL7Q8IXQ5 586 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 GABPB2Q8TAK5 448 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-205ENST00000367251 TBC1D31Q96DN5 1066 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 CABS1Q96KC9 395 aa9.9□□□□□ -0.82
SYNE1-205ENST00000367251 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.9□□□□□ -0.82
SYNE1-205ENST00000367251 MRPL11Q9Y3B7 192 aaKnown RBP9.9□□□□□ -0.82
SYNE1-205ENST00000367251 USP42Q9H9J4 1324 aaKnown RBP9.9□□□□□ -0.83
SYNE1-205ENST00000367251 A0A1B0GUA9 196 aa9.9□□□□□ -0.83
SYNE1-205ENST00000367251 STK10O94804 968 aaKnown RBP9.9□□□□□ -0.83
SYNE1-205ENST00000367251 ADORA1P30542 326 aa9.9□□□□□ -0.83
SYNE1-205ENST00000367251 LONRF2Q1L5Z9 754 aa9.9□□□□□ -0.83
SYNE1-205ENST00000367251 PPP1R2P3Q6NXS1 205 aa9.9□□□□□ -0.83
SYNE1-205ENST00000367251 FLAD1Q8NFF5 587 aa9.9□□□□□ -0.83
SYNE1-205ENST00000367251 CSADQ9Y600 493 aa9.9□□□□□ -0.83
SYNE1-205ENST00000367251 GAP43P17677 238 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 TECP42680 631 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 DPCR1Q3MIW9 517 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 NELFCDQ8IXH7 590 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 IPO4Q8TEX9 1081 aaKnown RBP9.89□□□□□ -0.83
SYNE1-205ENST00000367251 FAM81BQ96LP2 452 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 HAUS2Q9NVX0 235 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 H0YIN7 160 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 FAM26FQ5R3K3 315 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 CACTINQ8WUQ7 758 aaKnown RBP9.89□□□□□ -0.83
SYNE1-205ENST00000367251 P2RX5Q93086 422 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 PUS3Q9BZE2 481 aaKnown RBP9.89□□□□□ -0.83
SYNE1-205ENST00000367251 AZI2Q9H6S1 392 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 FAM204AQ9H8W3 233 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 USP40Q9NVE5 1235 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 ABCD1P33897 745 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 PPP2R5CQ13362 524 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 ZYXQ15942 572 aaKnown RBP9.89□□□□□ -0.83
SYNE1-205ENST00000367251 ASIC3Q9UHC3 531 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 DDX41Q9UJV9 622 aaKnown RBP9.89□□□□□ -0.83
SYNE1-205ENST00000367251 NRKQ7Z2Y5 1582 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 XDHP47989 1333 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 WDR46O15213 610 aaKnown RBP9.89□□□□□ -0.83
SYNE1-205ENST00000367251 GAS7O60861 476 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 MAN1A1P33908 653 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 GYG1P46976 350 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 MCF2L2Q86YR7 1114 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 CCDC105Q8IYK2 499 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 SDR42E1Q8WUS8 393 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 STAMQ92783 540 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 STMN2Q93045 179 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 TUBGCP2Q9BSJ2 902 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 DESI2Q9BSY9 194 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 TYW1Q9NV66 732 aaKnown RBP9.89□□□□□ -0.83
SYNE1-205ENST00000367251 ZNF804BA4D1E1 1349 aa9.89□□□□□ -0.83
SYNE1-205ENST00000367251 MFSD14BQ5SR56 506 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 RESP18Q5W5W9 173 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 CNOT6LQ96LI5 555 aaKnown RBP9.88□□□□□ -0.83
SYNE1-205ENST00000367251 RIOK1Q9BRS2 568 aaKnown RBP9.88□□□□□ -0.83
SYNE1-205ENST00000367251 RABGAP1Q9Y3P9 1069 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 APBA3O96018 575 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 LMNB1P20700 586 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 CASP14P31944 242 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 FNBP4Q8N3X1 1017 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-205ENST00000367251 PDLIM2Q96JY6 352 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 HOMER3Q9NSC5 361 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 CAMSAP1Q5T5Y3 1602 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 H2AFZP0C0S5 128 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 MAN2A1Q16706 1144 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 LONRF3Q496Y0 759 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 CFAP157Q5JU67 520 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 H2AFVQ71UI9 128 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 RSPH3Q86UC2 560 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 NIM1KQ8IY84 436 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 CACNA2D3Q8IZS8 1091 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 U2AF1L4Q8WU68 220 aaKnown RBP9.88□□□□□ -0.83
SYNE1-205ENST00000367251 OSBP2Q969R2 916 aa9.88□□□□□ -0.83
SYNE1-205ENST00000367251 ABT1Q9ULW3 272 aaKnown RBP9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms