RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 PPP2R3BQ9Y5P8 575 aa8.6□□□□□ -1.03
VPS13A-201ENST00000355766 KCNMB2Q9Y691 235 aa8.6□□□□□ -1.03
VPS13A-201ENST00000355766 SCO2A0A1W2PP80 73 aa8.59□□□□□ -1.03
VPS13A-201ENST00000355766 HSP90B1P14625 803 aaKnown RBP8.59□□□□□ -1.03
VPS13A-201ENST00000355766 EIF2AK2P19525 551 aaKnown RBP8.59□□□□□ -1.03
VPS13A-201ENST00000355766 ARID4AP29374 1257 aaPredicted RBP8.59□□□□□ -1.03
VPS13A-201ENST00000355766 ARHGEF6Q15052 776 aa8.59□□□□□ -1.03
VPS13A-201ENST00000355766 OCLNQ16625 522 aa8.59□□□□□ -1.03
VPS13A-201ENST00000355766 CCDC152Q4G0S7 254 aa8.59□□□□□ -1.03
VPS13A-201ENST00000355766 TMEM57Q8N5G2 664 aa8.59□□□□□ -1.03
VPS13A-201ENST00000355766 ZBTB38Q8NAP3 1195 aaPredicted RBP8.59□□□□□ -1.03
VPS13A-201ENST00000355766 PTPN18Q99952 460 aa8.59□□□□□ -1.03
VPS13A-201ENST00000355766 SAP130Q9H0E3 1048 aa8.59□□□□□ -1.03
VPS13A-201ENST00000355766 DEFB129Q9H1M3 183 aa8.59□□□□□ -1.03
VPS13A-201ENST00000355766 HYPKQ9NX55 129 aa8.59□□□□□ -1.03
VPS13A-201ENST00000355766 KIAA0100Q14667 2235 aaKnown RBP8.59□□□□□ -1.03
VPS13A-201ENST00000355766 COL6A3P12111 3177 aa8.59□□□□□ -1.03
VPS13A-201ENST00000355766 ZNF804BA4D1E1 1349 aa8.58□□□□□ -1.04
VPS13A-201ENST00000355766 CEP290O15078 2479 aa8.58□□□□□ -1.04
VPS13A-201ENST00000355766 A0A1W2PPC1 479 aa8.58□□□□□ -1.04
VPS13A-201ENST00000355766 J3QW42 95 aa8.58□□□□□ -1.04
VPS13A-201ENST00000355766 DEAF1O75398 565 aaPredicted RBP8.58□□□□□ -1.04
VPS13A-201ENST00000355766 KIAA0825Q8IV33 1275 aa8.58□□□□□ -1.04
VPS13A-201ENST00000355766 ANKRD18AQ8IVF6 992 aa8.58□□□□□ -1.04
VPS13A-201ENST00000355766 ETFBKMTQ8IXQ9 262 aa8.58□□□□□ -1.04
VPS13A-201ENST00000355766 SH3TC2Q8TF17 1288 aa8.58□□□□□ -1.04
VPS13A-201ENST00000355766 STK32AQ8WU08 396 aa8.58□□□□□ -1.04
VPS13A-201ENST00000355766 WFDC12Q8WWY7 111 aa8.58□□□□□ -1.04
VPS13A-201ENST00000355766 COA1Q9GZY4 146 aa8.58□□□□□ -1.04
VPS13A-201ENST00000355766 HDAC5Q9UQL6 1122 aa8.58□□□□□ -1.04
VPS13A-201ENST00000355766 LAMA3Q16787 3333 aa8.57□□□□□ -1.04
VPS13A-201ENST00000355766 WTIPA6NIX2 430 aaPredicted RBP8.57□□□□□ -1.04
VPS13A-201ENST00000355766 ELL2O00472 640 aaPredicted RBP8.57□□□□□ -1.04
VPS13A-201ENST00000355766 SOX1O00570 391 aaPredicted RBP8.57□□□□□ -1.04
VPS13A-201ENST00000355766 PDE8AO60658 829 aa8.57□□□□□ -1.04
VPS13A-201ENST00000355766 MMP20O60882 483 aa8.57□□□□□ -1.04
VPS13A-201ENST00000355766 IREB2P48200 963 aaKnown RBP8.57□□□□□ -1.04
VPS13A-201ENST00000355766 ELOAQ14241 798 aaKnown RBP8.57□□□□□ -1.04
VPS13A-201ENST00000355766 TAF1CQ15572 869 aaPredicted RBP8.57□□□□□ -1.04
VPS13A-201ENST00000355766 KRT24Q2M2I5 525 aa8.57□□□□□ -1.04
VPS13A-201ENST00000355766 FAM26DQ5JW98 314 aa8.57□□□□□ -1.04
VPS13A-201ENST00000355766 UBE2Q1Q7Z7E8 422 aa8.57□□□□□ -1.04
VPS13A-201ENST00000355766 ANKRD13AQ8IZ07 590 aa8.57□□□□□ -1.04
VPS13A-201ENST00000355766 DPF3Q92784 378 aa8.57□□□□□ -1.04
VPS13A-201ENST00000355766 HTATIP2Q9BUP3 242 aa8.57□□□□□ -1.04
VPS13A-201ENST00000355766 OTOFQ9HC10 1997 aa8.57□□□□□ -1.04
VPS13A-201ENST00000355766 A0A0C4DFX4 3053 aa8.57□□□□□ -1.04
VPS13A-201ENST00000355766 DDX58O95786 925 aaKnown RBP8.56□□□□□ -1.04
VPS13A-201ENST00000355766 PCCAP05165 728 aaPredicted RBP8.56□□□□□ -1.04
VPS13A-201ENST00000355766 PSAPP07602 524 aa8.56□□□□□ -1.04
VPS13A-201ENST00000355766 GNAI3P08754 354 aa8.56□□□□□ -1.04
VPS13A-201ENST00000355766 NOS3P29474 1203 aa8.56□□□□□ -1.04
VPS13A-201ENST00000355766 SUPT20HL1Q3ZLR7 823 aa8.56□□□□□ -1.04
VPS13A-201ENST00000355766 IGF2-ASQ6U949 168 aa8.56□□□□□ -1.04
VPS13A-201ENST00000355766 CAPN12Q6ZSI9 719 aa8.56□□□□□ -1.04
VPS13A-201ENST00000355766 RPAP2Q8IXW5 612 aaPredicted RBP8.56□□□□□ -1.04
VPS13A-201ENST00000355766 SMC5Q8IY18 1101 aa8.56□□□□□ -1.04
VPS13A-201ENST00000355766 BRI3BPQ8WY22 251 aa8.56□□□□□ -1.04
VPS13A-201ENST00000355766 PLD4Q96BZ4 506 aa8.56□□□□□ -1.04
VPS13A-201ENST00000355766 NSUN5Q96P11 429 aaKnown RBP8.56□□□□□ -1.04
VPS13A-201ENST00000355766 CDC5LQ99459 802 aaKnown RBP8.56□□□□□ -1.04
VPS13A-201ENST00000355766 ZFYVE28Q9HCC9 887 aa8.56□□□□□ -1.04
VPS13A-201ENST00000355766 ALDH1L1O75891 902 aa8.55□□□□□ -1.04
VPS13A-201ENST00000355766 PRMT2P55345 433 aa8.55□□□□□ -1.04
VPS13A-201ENST00000355766 DLGAP5Q15398 846 aa8.55□□□□□ -1.04
VPS13A-201ENST00000355766 ARTNQ5T4W7 220 aa8.55□□□□□ -1.04
VPS13A-201ENST00000355766 NBPF12Q5TAG4 269 aaPredicted RBP8.55□□□□□ -1.04
VPS13A-201ENST00000355766 C16orf46Q6P387 395 aa8.55□□□□□ -1.04
VPS13A-201ENST00000355766 OPTNQ96CV9 577 aa8.55□□□□□ -1.04
VPS13A-201ENST00000355766 ARHGAP39Q9C0H5 1083 aa8.55□□□□□ -1.04
VPS13A-201ENST00000355766 ELP3Q9H9T3 547 aa8.55□□□□□ -1.04
VPS13A-201ENST00000355766 MINPP1Q9UNW1 487 aa8.55□□□□□ -1.04
VPS13A-201ENST00000355766 NR2E3Q9Y5X4 410 aa8.55□□□□□ -1.04
VPS13A-201ENST00000355766 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.54□□□□□ -1.04
VPS13A-201ENST00000355766 CCL15-CCL14A0A0B4J2E2 113 aa8.54□□□□□ -1.04
VPS13A-201ENST00000355766 CLRN2A0PK11 232 aa8.54□□□□□ -1.04
VPS13A-201ENST00000355766 MYO1BO43795 1136 aa8.54□□□□□ -1.04
VPS13A-201ENST00000355766 HMMRO75330 724 aa8.54□□□□□ -1.04
VPS13A-201ENST00000355766 USP2O75604 605 aaPredicted RBP8.54□□□□□ -1.04
VPS13A-201ENST00000355766 HOXD8P13378 290 aaPredicted RBP8.54□□□□□ -1.04
VPS13A-201ENST00000355766 BRD2P25440 801 aaKnown RBP8.54□□□□□ -1.04
VPS13A-201ENST00000355766 GJA8P48165 433 aa8.54□□□□□ -1.04
VPS13A-201ENST00000355766 CTSWP56202 376 aa8.54□□□□□ -1.04
VPS13A-201ENST00000355766 LACTBP83111 547 aaPredicted RBP8.54□□□□□ -1.04
VPS13A-201ENST00000355766 KIF22Q14807 665 aa8.54□□□□□ -1.04
VPS13A-201ENST00000355766 TRIP4Q15650 581 aaPredicted RBP8.54□□□□□ -1.04
VPS13A-201ENST00000355766 CCL15Q16663 113 aa8.54□□□□□ -1.04
VPS13A-201ENST00000355766 TTLL5Q6EMB2 1281 aa8.54□□□□□ -1.04
VPS13A-201ENST00000355766 FAM43AQ8N2R8 423 aa8.54□□□□□ -1.04
VPS13A-201ENST00000355766 CCDC191Q8NCU4 936 aa8.54□□□□□ -1.04
VPS13A-201ENST00000355766 KRTAP4-8Q9BYQ9 185 aa8.54□□□□□ -1.04
VPS13A-201ENST00000355766 BSDC1Q9NW68 430 aaPredicted RBP8.54□□□□□ -1.04
VPS13A-201ENST00000355766 ZSWIM8A7E2V4 1837 aa8.54□□□□□ -1.04
VPS13A-201ENST00000355766 ECM29Q5VYK3 1845 aa8.53□□□□□ -1.04
VPS13A-201ENST00000355766 TNFRSF10BO14763 440 aa8.53□□□□□ -1.04
VPS13A-201ENST00000355766 TLR2O60603 784 aa8.53□□□□□ -1.04
VPS13A-201ENST00000355766 KLRK1P26718 216 aa8.53□□□□□ -1.04
VPS13A-201ENST00000355766 SOX18P35713 384 aa8.53□□□□□ -1.04
VPS13A-201ENST00000355766 GTF2A2P52657 109 aa8.53□□□□□ -1.04
VPS13A-201ENST00000355766 GDF6Q6KF10 455 aaPredicted RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms