RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 C8orf74Q6P047 294 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 CYFIP2Q96F07 1278 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 MS4A14Q96JA4 679 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 OSBPL7Q9BZF2 842 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 GDF3Q9NR23 364 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 GGA2Q9UJY4 613 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 MYH10P35580 1976 aa7.56□□□□□ -1.2
VPS39-202ENST00000348544 NUTM2BA6NNL0 878 aaPredicted RBP7.55□□□□□ -1.2
VPS39-202ENST00000348544 NUTM2EB1AL46 878 aaPredicted RBP7.55□□□□□ -1.2
VPS39-202ENST00000348544 E7EVH7 732 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 ADAMTS3O15072 1205 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 CYP27B1O15528 508 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 PRKAB2O43741 272 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 IPO7O95373 1038 aaKnown RBP7.55□□□□□ -1.2
VPS39-202ENST00000348544 TRIM21P19474 475 aaKnown RBP7.55□□□□□ -1.2
VPS39-202ENST00000348544 DNM2P50570 870 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 FUT2Q10981 343 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 PPP2R5AQ15172 486 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 TTC38Q5R3I4 469 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 CYB5D1Q6P9G0 228 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 GPIHBP1Q8IV16 184 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 CD302Q8IX05 232 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 FUKQ8N0W3 1084 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 ATP6V1G3Q96LB4 118 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 TLR10Q9BXR5 811 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 NAPBQ9H115 298 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 TPX2Q9ULW0 747 aaKnown RBP7.55□□□□□ -1.2
VPS39-202ENST00000348544 HYOU1Q9Y4L1 999 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 MYH2Q9UKX2 1941 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 GSG1L2A8MUP6 293 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 PATL2C9JE40 543 aaKnown RBP7.55□□□□□ -1.2
VPS39-202ENST00000348544 TACC1O75410 805 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 MBD4O95243 580 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 SSBP05455 408 aaKnown RBP eCLIP7.55□□□□□ -1.2
VPS39-202ENST00000348544 GUCY2FP51841 1108 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 QPCTQ16769 361 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 ESCO1Q5FWF5 840 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 TTI2Q6NXR4 508 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 TLDC1Q6P9B6 456 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 MFSD6Q6ZSS7 791 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 CEP57Q86XR8 500 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 PARP9Q8IXQ6 854 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 RAPGEF4Q8WZA2 1011 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 DUSP9Q99956 384 aaKnown RBP7.55□□□□□ -1.2
VPS39-202ENST00000348544 TUBGCP2Q9BSJ2 902 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 RNF26Q9BY78 433 aaPredicted RBP7.55□□□□□ -1.2
VPS39-202ENST00000348544 IFIH1Q9BYX4 1025 aaKnown RBP7.55□□□□□ -1.2
VPS39-202ENST00000348544 THAP9Q9H5L6 903 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 ARMT1Q9H993 441 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 EXOC1Q9NV70 894 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 HAUS2Q9NVX0 235 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 ZNHIT6Q9NWK9 470 aaKnown RBP7.55□□□□□ -1.2
VPS39-202ENST00000348544 ARHGAP20Q9P2F6 1191 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 KCNG1Q9UIX4 513 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 PCDHA13Q9Y5I0 950 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 SMIM22K7EJ46 135 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 OPLAHO14841 1288 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 EPHB6O15197 1021 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 RTN2O75298 545 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 TCP1P17987 556 aaKnown RBP7.55□□□□□ -1.2
VPS39-202ENST00000348544 PHKA1P46020 1223 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 CDK17Q00537 523 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 DRP2Q13474 957 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 BYSLQ13895 437 aaKnown RBP7.55□□□□□ -1.2
VPS39-202ENST00000348544 SNCBQ16143 134 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 NAALADL2Q58DX5 795 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 MIIPQ5JXC2 388 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 ANKLE2Q86XL3 938 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 KIRREL3Q8IZU9 778 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 MREGQ8N565 214 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 CASKIN2Q8WXE0 1202 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 TRIM47Q96LD4 638 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 CCDC114Q96M63 670 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 TSGA10Q9BZW7 698 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 KRT23Q9C075 422 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 CNNM2Q9H8M5 875 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 EPB41L5Q9HCM4 733 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 PPANQ9NQ55 473 aaKnown RBP7.55□□□□□ -1.2
VPS39-202ENST00000348544 RMND1Q9NWS8 449 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 RIPOR2Q9Y4F9 1068 aa7.55□□□□□ -1.2
VPS39-202ENST00000348544 KLRC4O43908 158 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 HEXIM1O94992 359 aaKnown RBP7.54□□□□□ -1.2
VPS39-202ENST00000348544 PLEKHA8P1O95397 391 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 BMP15O95972 392 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 GUCY2DQ02846 1103 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 TBC1D8BQ0IIM8 1120 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 E2F5Q15329 346 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 ANKRD20A8PQ5CZ79 823 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 CCDC181Q5TID7 509 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 TYW1BQ6NUM6 668 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 TEX11Q8IYF3 940 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 IFNL2Q8IZJ0 200 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 ANKRD13CQ8N6S4 541 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 IFT81Q8WYA0 676 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 MTMR8Q96EF0 704 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 SGSM3Q96HU1 749 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 CCDC42Q96M95 316 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 FBXO3Q9UK99 471 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.54□□□□□ -1.2
VPS39-202ENST00000348544 FRMD3A2A2Y4 597 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms