RNA–Protein interactions for RNA: ENST00000345512.7

PTPRU-201, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRU, Length 4,470 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-201ENST00000345512 FAM170AA1A519 330 aa17.2■□□□□ 0.34
PTPRU-201ENST00000345512 SPDYE3A6NKU9 549 aa17.2■□□□□ 0.34
PTPRU-201ENST00000345512 GNPATO15228 680 aa17.2■□□□□ 0.34
PTPRU-201ENST00000345512 MAP3K14Q99558 947 aa17.2■□□□□ 0.34
PTPRU-201ENST00000345512 JRKLQ9Y4A0 524 aa17.2■□□□□ 0.34
PTPRU-201ENST00000345512 RPL13P26373 211 aaKnown RBP17.2■□□□□ 0.34
PTPRU-201ENST00000345512 IRX3P78415 501 aaPredicted RBP17.2■□□□□ 0.34
PTPRU-201ENST00000345512 CEP85LQ5SZL2 805 aa17.2■□□□□ 0.34
PTPRU-201ENST00000345512 GSPT2Q8IYD1 628 aaKnown RBP17.2■□□□□ 0.34
PTPRU-201ENST00000345512 PLCD4Q9BRC7 762 aa17.2■□□□□ 0.34
PTPRU-201ENST00000345512 NUCKS1Q9H1E3 243 aaKnown RBP17.2■□□□□ 0.34
PTPRU-201ENST00000345512 COL15A1P39059 1388 aa17.2■□□□□ 0.34
PTPRU-201ENST00000345512 DLG5Q8TDM6 1919 aa17.2■□□□□ 0.34
PTPRU-201ENST00000345512 KCNK3O14649 394 aa17.19■□□□□ 0.34
PTPRU-201ENST00000345512 ACTN4O43707 911 aaKnown RBP17.19■□□□□ 0.34
PTPRU-201ENST00000345512 CSF1RP07333 972 aa17.19■□□□□ 0.34
PTPRU-201ENST00000345512 EIF4A3P38919 411 aaKnown RBP17.19■□□□□ 0.34
PTPRU-201ENST00000345512 EHHADHQ08426 723 aa17.19■□□□□ 0.34
PTPRU-201ENST00000345512 PPANQ9NQ55 473 aaKnown RBP17.19■□□□□ 0.34
PTPRU-201ENST00000345512 RTCBQ9Y3I0 505 aaKnown RBP17.19■□□□□ 0.34
PTPRU-201ENST00000345512 E7EVH7 732 aa17.19■□□□□ 0.34
PTPRU-201ENST00000345512 USP17L8P0C7I0 530 aa17.19■□□□□ 0.34
PTPRU-201ENST00000345512 RASGRP2Q7LDG7 609 aa17.19■□□□□ 0.34
PTPRU-201ENST00000345512 HS2ST1Q7LGA3 356 aa17.19■□□□□ 0.34
PTPRU-201ENST00000345512 NGLY1Q96IV0 654 aa17.19■□□□□ 0.34
PTPRU-201ENST00000345512 CUEDC2Q9H467 287 aa17.19■□□□□ 0.34
PTPRU-201ENST00000345512 RASAL2Q9UJF2 1139 aa17.19■□□□□ 0.34
PTPRU-201ENST00000345512 SPATA31A3Q5VYP0 1347 aa17.19■□□□□ 0.34
PTPRU-201ENST00000345512 FAM13AO94988 1023 aa17.19■□□□□ 0.34
PTPRU-201ENST00000345512 RCAN1P53805 252 aa17.19■□□□□ 0.34
PTPRU-201ENST00000345512 LRRC41Q15345 812 aa17.19■□□□□ 0.34
PTPRU-201ENST00000345512 FOXP4Q8IVH2 680 aaPredicted RBP17.19■□□□□ 0.34
PTPRU-201ENST00000345512 MTA3Q9BTC8 594 aa17.19■□□□□ 0.34
PTPRU-201ENST00000345512 SUGCTQ9HAC7 445 aa17.19■□□□□ 0.34
PTPRU-201ENST00000345512 LOC102724428A0A0B4J2F2 783 aa17.18■□□□□ 0.34
PTPRU-201ENST00000345512 PP2D1A8MPX8 630 aa17.18■□□□□ 0.34
PTPRU-201ENST00000345512 CASP7P55210 303 aa17.18■□□□□ 0.34
PTPRU-201ENST00000345512 SIK1P57059 783 aa17.18■□□□□ 0.34
PTPRU-201ENST00000345512 DYNLL2Q96FJ2 89 aa17.18■□□□□ 0.34
PTPRU-201ENST00000345512 UFL1O94874 794 aa17.18■□□□□ 0.34
PTPRU-201ENST00000345512 TRIM65Q6PJ69 517 aa17.18■□□□□ 0.34
PTPRU-201ENST00000345512 FNBP4Q8N3X1 1017 aaPredicted RBP17.18■□□□□ 0.34
PTPRU-201ENST00000345512 SCLT1Q96NL6 688 aa17.18■□□□□ 0.34
PTPRU-201ENST00000345512 PLA2G12BQ9BX93 195 aa17.18■□□□□ 0.34
PTPRU-201ENST00000345512 MAGEF1Q9HAY2 307 aa17.18■□□□□ 0.34
PTPRU-201ENST00000345512 SAMM50Q9Y512 469 aa17.18■□□□□ 0.34
PTPRU-201ENST00000345512 CAPN7Q9Y6W3 813 aa17.18■□□□□ 0.34
PTPRU-201ENST00000345512 SLIT1O75093 1534 aa17.18■□□□□ 0.34
PTPRU-201ENST00000345512 LAD1O00515 517 aa17.18■□□□□ 0.34
PTPRU-201ENST00000345512 CYP2D6P10635 497 aa17.18■□□□□ 0.34
PTPRU-201ENST00000345512 EPB41P11171 864 aaKnown RBP17.18■□□□□ 0.34
PTPRU-201ENST00000345512 TNIP1Q15025 636 aa17.18■□□□□ 0.34
PTPRU-201ENST00000345512 PEX26Q7Z412 305 aa17.18■□□□□ 0.34
PTPRU-201ENST00000345512 ANKS4BQ8N8V4 417 aa17.18■□□□□ 0.34
PTPRU-201ENST00000345512 FRMPD2Q68DX3 1309 aaPredicted RBP17.18■□□□□ 0.34
PTPRU-201ENST00000345512 GYPCP04921 128 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 MYL1P05976 194 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 ATP2C1P98194 919 aaPredicted RBP17.17■□□□□ 0.34
PTPRU-201ENST00000345512 RUFY4Q6ZNE9 571 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 CCDC25Q86WR0 208 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 CABS1Q96KC9 395 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 AK8Q96MA6 479 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 EPHB4P54760 987 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 SF3A3Q12874 501 aaKnown RBP eCLIP17.17■□□□□ 0.34
PTPRU-201ENST00000345512 MSL1Q68DK7 614 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 EPB41L5Q9HCM4 733 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 RIMBP2O15034 1052 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 PPFIA4O75335 1185 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 NF2P35240 595 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 PRPHP41219 470 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 ARHGAP25P42331 645 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 KIF11P52732 1056 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 DPYDQ12882 1025 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 GBP6Q6ZN66 633 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 SMCR8Q8TEV9 937 aaPredicted RBP17.17■□□□□ 0.34
PTPRU-201ENST00000345512 LARP4BQ92615 738 aaKnown RBP17.17■□□□□ 0.34
PTPRU-201ENST00000345512 KRT12Q99456 494 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 BRIP1Q9BX63 1249 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 FAM184BQ9ULE4 1060 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 FLOT1O75955 427 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 ATP1A1P05023 1023 aaKnown RBP17.17■□□□□ 0.34
PTPRU-201ENST00000345512 MECOMQ03112 1051 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 MAN2A1Q16706 1144 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 FAM26FQ5R3K3 315 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 TBCKQ8TEA7 893 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 TRIM10Q9UDY6 481 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 PCDHA13Q9Y5I0 950 aa17.17■□□□□ 0.34
PTPRU-201ENST00000345512 USP17L3A6NCW0 530 aa17.16■□□□□ 0.34
PTPRU-201ENST00000345512 USP17L4A6NCW7 530 aa17.16■□□□□ 0.34
PTPRU-201ENST00000345512 TOB1P50616 345 aaPredicted RBP17.16■□□□□ 0.34
PTPRU-201ENST00000345512 PLS1Q14651 629 aa17.16■□□□□ 0.34
PTPRU-201ENST00000345512 PFKFB3Q16875 520 aaPredicted RBP17.16■□□□□ 0.34
PTPRU-201ENST00000345512 USP17L1Q7RTZ2 530 aa17.16■□□□□ 0.34
PTPRU-201ENST00000345512 DAAM2Q86T65 1068 aa17.16■□□□□ 0.34
PTPRU-201ENST00000345512 NDST4Q9H3R1 872 aa17.16■□□□□ 0.34
PTPRU-201ENST00000345512 ZNF446Q9NWS9 450 aa17.16■□□□□ 0.34
PTPRU-201ENST00000345512 PCDHA12Q9UN75 941 aa17.16■□□□□ 0.34
PTPRU-201ENST00000345512 HEXIM1O94992 359 aaKnown RBP17.16■□□□□ 0.34
PTPRU-201ENST00000345512 CETN2P41208 172 aa17.16■□□□□ 0.34
PTPRU-201ENST00000345512 KRT71Q3SY84 523 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms