RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 LRRC1Q9BTT6 524 aa24.99■■□□□ 1.59
TRIM28-202ENST00000341753 DMGDHQ9UI17 866 aaKnown RBP24.99■■□□□ 1.59
TRIM28-202ENST00000341753 COL22A1Q8NFW1 1626 aaPredicted RBP24.99■■□□□ 1.59
TRIM28-202ENST00000341753 CXCR5P32302 372 aa24.99■■□□□ 1.59
TRIM28-202ENST00000341753 NAALADL2Q58DX5 795 aa24.99■■□□□ 1.59
TRIM28-202ENST00000341753 TADA2BQ86TJ2 420 aa24.99■■□□□ 1.59
TRIM28-202ENST00000341753 TUBGCP2Q9BSJ2 902 aa24.99■■□□□ 1.59
TRIM28-202ENST00000341753 RBM28Q9NW13 759 aaKnown RBP24.99■■□□□ 1.59
TRIM28-202ENST00000341753 TFCP2L1Q9NZI6 479 aa24.99■■□□□ 1.59
TRIM28-202ENST00000341753 FAM205AQ6ZU69 1335 aa24.99■■□□□ 1.59
TRIM28-202ENST00000341753 PPP2R5BQ15173 497 aa24.99■■□□□ 1.59
TRIM28-202ENST00000341753 EFCAB13Q8IY85 973 aa24.99■■□□□ 1.59
TRIM28-202ENST00000341753 ZNF384Q8TF68 577 aa24.99■■□□□ 1.59
TRIM28-202ENST00000341753 MLXIPQ9HAP2 919 aa24.99■■□□□ 1.59
TRIM28-202ENST00000341753 POLD4Q9HCU8 107 aa24.99■■□□□ 1.59
TRIM28-202ENST00000341753 ZNHIT6Q9NWK9 470 aaKnown RBP24.99■■□□□ 1.59
TRIM28-202ENST00000341753 MINPP1Q9UNW1 487 aa24.99■■□□□ 1.59
TRIM28-202ENST00000341753 ZNF652Q9Y2D9 606 aa24.99■■□□□ 1.59
TRIM28-202ENST00000341753 A0A1W2PQC6 194 aa24.98■■□□□ 1.59
TRIM28-202ENST00000341753 SCG2P13521 617 aa24.98■■□□□ 1.59
TRIM28-202ENST00000341753 TBC1D8BQ0IIM8 1120 aa24.98■■□□□ 1.59
TRIM28-202ENST00000341753 DISC1Q9NRI5 854 aa24.98■■□□□ 1.59
TRIM28-202ENST00000341753 ZNF263O14978 683 aa24.98■■□□□ 1.59
TRIM28-202ENST00000341753 MEA1Q16626 185 aa24.98■■□□□ 1.59
TRIM28-202ENST00000341753 CCDC96Q2M329 555 aa24.98■■□□□ 1.59
TRIM28-202ENST00000341753 CSGALNACT2Q8N6G5 542 aa24.98■■□□□ 1.59
TRIM28-202ENST00000341753 EHBP1Q8NDI1 1231 aa24.98■■□□□ 1.59
TRIM28-202ENST00000341753 EXOC1Q9NV70 894 aa24.98■■□□□ 1.59
TRIM28-202ENST00000341753 CAPN6Q9Y6Q1 641 aa24.98■■□□□ 1.59
TRIM28-202ENST00000341753 EEF1GP26641 437 aaKnown RBP24.97■■□□□ 1.59
TRIM28-202ENST00000341753 AMIGO3Q86WK7 504 aa24.97■■□□□ 1.59
TRIM28-202ENST00000341753 DOCK2Q92608 1830 aa24.97■■□□□ 1.59
TRIM28-202ENST00000341753 LRRC15Q8TF66 581 aa24.97■■□□□ 1.59
TRIM28-202ENST00000341753 AENQ8WTP8 325 aaKnown RBP24.97■■□□□ 1.59
TRIM28-202ENST00000341753 SECISBP2LQ93073 1101 aaKnown RBP24.97■■□□□ 1.59
TRIM28-202ENST00000341753 RPGRIP1Q96KN7 1286 aa24.97■■□□□ 1.59
TRIM28-202ENST00000341753 C8orf37Q96NL8 207 aa24.97■■□□□ 1.59
TRIM28-202ENST00000341753 SRGNP10124 158 aa24.96■■□□□ 1.59
TRIM28-202ENST00000341753 DNM2P50570 870 aa24.96■■□□□ 1.59
TRIM28-202ENST00000341753 BCAS4Q8TDM0 211 aa24.96■■□□□ 1.59
TRIM28-202ENST00000341753 TTYH3Q9C0H2 523 aa24.96■■□□□ 1.59
TRIM28-202ENST00000341753 SAMM50Q9Y512 469 aa24.96■■□□□ 1.59
TRIM28-202ENST00000341753 MYH13Q9UKX3 1938 aa24.96■■□□□ 1.59
TRIM28-202ENST00000341753 NRAPQ86VF7 1730 aa24.96■■□□□ 1.59
TRIM28-202ENST00000341753 PSMA7O14818 248 aa24.96■■□□□ 1.59
TRIM28-202ENST00000341753 KLRC4O43908 158 aa24.96■■□□□ 1.59
TRIM28-202ENST00000341753 SHOX2O60902 331 aaPredicted RBP24.96■■□□□ 1.59
TRIM28-202ENST00000341753 GNGT1P63211 74 aa24.96■■□□□ 1.59
TRIM28-202ENST00000341753 IRX3P78415 501 aaPredicted RBP24.96■■□□□ 1.59
TRIM28-202ENST00000341753 KIF5AQ12840 1032 aa24.96■■□□□ 1.59
TRIM28-202ENST00000341753 TTI2Q6NXR4 508 aa24.96■■□□□ 1.59
TRIM28-202ENST00000341753 C4orf32Q8N8J7 132 aa24.96■■□□□ 1.59
TRIM28-202ENST00000341753 FAM84BQ96KN1 310 aaPredicted RBP24.96■■□□□ 1.59
TRIM28-202ENST00000341753 DUSP9Q99956 384 aaKnown RBP24.96■■□□□ 1.59
TRIM28-202ENST00000341753 TMEM60Q9H2L4 133 aa24.96■■□□□ 1.59
TRIM28-202ENST00000341753 ANAPC4Q9UJX5 808 aa24.96■■□□□ 1.59
TRIM28-202ENST00000341753 FAM184BQ9ULE4 1060 aa24.96■■□□□ 1.59
TRIM28-202ENST00000341753 MOCS3O95396 460 aa24.95■■□□□ 1.59
TRIM28-202ENST00000341753 CREG2Q8IUH2 290 aa24.95■■□□□ 1.59
TRIM28-202ENST00000341753 CAPS2Q9BXY5 557 aa24.95■■□□□ 1.59
TRIM28-202ENST00000341753 THAP9Q9H5L6 903 aa24.95■■□□□ 1.59
TRIM28-202ENST00000341753 KAT2BQ92831 832 aa24.95■■□□□ 1.58
TRIM28-202ENST00000341753 USP17L12C9JPN9 530 aa24.94■■□□□ 1.58
TRIM28-202ENST00000341753 USP17L21D6R901 530 aa24.94■■□□□ 1.58
TRIM28-202ENST00000341753 LONP1P36776 959 aaKnown RBP24.94■■□□□ 1.58
TRIM28-202ENST00000341753 TYW1BQ6NUM6 668 aa24.94■■□□□ 1.58
TRIM28-202ENST00000341753 NFRKBQ6P4R8 1299 aa24.94■■□□□ 1.58
TRIM28-202ENST00000341753 RIOK1Q9BRS2 568 aaKnown RBP24.94■■□□□ 1.58
TRIM28-202ENST00000341753 FAM169AQ9Y6X4 670 aa24.94■■□□□ 1.58
TRIM28-202ENST00000341753 A0A087WUV0 522 aaPredicted RBP24.94■■□□□ 1.58
TRIM28-202ENST00000341753 ERCC3P19447 782 aa24.94■■□□□ 1.58
TRIM28-202ENST00000341753 MTIF2P46199 727 aaKnown RBP24.94■■□□□ 1.58
TRIM28-202ENST00000341753 TSEN2Q8NCE0 465 aaKnown RBP24.94■■□□□ 1.58
TRIM28-202ENST00000341753 HPS3Q969F9 1004 aa24.94■■□□□ 1.58
TRIM28-202ENST00000341753 CNOT6LQ96LI5 555 aaKnown RBP24.94■■□□□ 1.58
TRIM28-202ENST00000341753 PYM1Q9BRP8 204 aaKnown RBP24.94■■□□□ 1.58
TRIM28-202ENST00000341753 MTMR7Q9Y216 660 aa24.94■■□□□ 1.58
TRIM28-202ENST00000341753 BCORQ6W2J9 1755 aa24.94■■□□□ 1.58
TRIM28-202ENST00000341753 ZNF804BA4D1E1 1349 aa24.93■■□□□ 1.58
TRIM28-202ENST00000341753 ARL8AQ96BM9 186 aa24.93■■□□□ 1.58
TRIM28-202ENST00000341753 CCDC42Q96M95 316 aa24.93■■□□□ 1.58
TRIM28-202ENST00000341753 SNX12Q9UMY4 172 aa24.93■■□□□ 1.58
TRIM28-202ENST00000341753 NCK2O43639 380 aa24.93■■□□□ 1.58
TRIM28-202ENST00000341753 ANKRD40Q6AI12 368 aa24.93■■□□□ 1.58
TRIM28-202ENST00000341753 ANKRD13CQ8N6S4 541 aa24.93■■□□□ 1.58
TRIM28-202ENST00000341753 CICQ96RK0 1608 aaPredicted RBP24.93■■□□□ 1.58
TRIM28-202ENST00000341753 EBAG9O00559 213 aa24.92■■□□□ 1.58
TRIM28-202ENST00000341753 CALM1P0DP23 149 aa24.92■■□□□ 1.58
TRIM28-202ENST00000341753 CALM2P0DP24 149 aa24.92■■□□□ 1.58
TRIM28-202ENST00000341753 CALM3P0DP25 149 aa24.92■■□□□ 1.58
TRIM28-202ENST00000341753 VAV2P52735 878 aa24.92■■□□□ 1.58
TRIM28-202ENST00000341753 ZBED6P86452 979 aa24.92■■□□□ 1.58
TRIM28-202ENST00000341753 CCDC178Q5BJE1 867 aa24.92■■□□□ 1.58
TRIM28-202ENST00000341753 BSDC1Q9NW68 430 aaPredicted RBP24.92■■□□□ 1.58
TRIM28-202ENST00000341753 ANO9A1A5B4 782 aa24.92■■□□□ 1.58
TRIM28-202ENST00000341753 TRAPPC10P48553 1259 aa24.92■■□□□ 1.58
TRIM28-202ENST00000341753 PPFIA1Q13136 1202 aa24.92■■□□□ 1.58
TRIM28-202ENST00000341753 PFKFB3Q16875 520 aaPredicted RBP24.92■■□□□ 1.58
TRIM28-202ENST00000341753 CAVIN4Q5BKX8 364 aa24.92■■□□□ 1.58
TRIM28-202ENST00000341753 CCDC70Q6NSX1 233 aa24.92■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms