RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 USP17L13C9JLJ4 530 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 USP17L11C9JVI0 530 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 USP17L18D6R9N7 530 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 USP17L22D6RA61 530 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 USP17L17D6RBQ6 530 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 USP17L19D6RCP7 530 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 USP17L20D6RJB6 530 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 hCG_1984214I3L0E3 225 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 EDIL3O43854 480 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 USP2O75604 605 aaPredicted RBP4.73□□□□□ -1.65
MCF2-201ENST00000338585 PTPRAP18433 802 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 CMA1P23946 247 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 GNA11P29992 359 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 EPHX2P34913 555 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 USP17L24Q0WX57 530 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 SPP2Q13103 211 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 NONOQ15233 471 aaKnown RBP eCLIP4.73□□□□□ -1.65
MCF2-201ENST00000338585 IL17AQ16552 155 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 CCDC174Q6PII3 467 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 USP17L6PQ6QN14 398 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 MOB2Q70IA6 237 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 KRT26Q7Z3Y9 468 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 SULF1Q8IWU6 871 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 SCYL3Q8IZE3 742 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 ZNF713Q8N859 430 aaPredicted RBP4.73□□□□□ -1.65
MCF2-201ENST00000338585 TBCKQ8TEA7 893 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 KLRG1Q96E93 195 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 P2RX7Q99572 595 aaKnown RBP4.73□□□□□ -1.65
MCF2-201ENST00000338585 PANK2Q9BZ23 570 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 CSRNP2Q9H175 543 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 TMEM60Q9H2L4 133 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 TNMDQ9H2S6 317 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 GRPEL1Q9HAV7 217 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 RIC8AQ9NPQ8 531 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 EMILIN3Q9NT22 766 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 DDX19AQ9NUU7 478 aaKnown RBP4.73□□□□□ -1.65
MCF2-201ENST00000338585 HPSEQ9Y251 543 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 PPP2R3BQ9Y5P8 575 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 PITPNM2Q9BZ72 1349 aa4.73□□□□□ -1.65
MCF2-201ENST00000338585 OPLAHO14841 1288 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 KINO60870 393 aaKnown RBP4.72□□□□□ -1.65
MCF2-201ENST00000338585 ZNF202O95125 648 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 XRCC6P12956 609 aaKnown RBP eCLIP4.72□□□□□ -1.65
MCF2-201ENST00000338585 TRAPPC10P48553 1259 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 CLK2P49760 499 aaKnown RBP4.72□□□□□ -1.65
MCF2-201ENST00000338585 ATP2C1P98194 919 aaPredicted RBP4.72□□□□□ -1.65
MCF2-201ENST00000338585 MAP3K11Q16584 847 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 LETM2Q2VYF4 491 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 SUPT20HL1Q3ZLR7 823 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 EAPPQ56P03 285 aaPredicted RBP4.72□□□□□ -1.65
MCF2-201ENST00000338585 RESP18Q5W5W9 173 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 PPP1R18Q6NYC8 613 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 KRT25Q7Z3Z0 450 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 FBXO11Q86XK2 927 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 HOMEZQ8IX15 550 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 C4orf32Q8N8J7 132 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 RNF214Q8ND24 703 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.72□□□□□ -1.65
MCF2-201ENST00000338585 FUCA2Q9BTY2 467 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 AMNQ9BXJ7 453 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 KIAA1683Q9H0B3 1180 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 SH2D4AQ9H788 454 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 PSTPIP2Q9H939 334 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 CEP131Q9UPN4 1083 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 SRPRBQ9Y5M8 271 aaKnown RBP4.72□□□□□ -1.65
MCF2-201ENST00000338585 ZHX2Q9Y6X8 837 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 A0A087X0B3 334 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 VWA3AA6NCI4 1184 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 GRIN3BO60391 1043 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 VCAM1P19320 739 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 HOXA13P31271 388 aaPredicted RBP4.72□□□□□ -1.65
MCF2-201ENST00000338585 HMGCS2P54868 508 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 FMR1Q06787 632 aaKnown RBP eCLIP4.72□□□□□ -1.65
MCF2-201ENST00000338585 VGLL4Q14135 290 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.72□□□□□ -1.65
MCF2-201ENST00000338585 NEK8Q86SG6 692 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 FAM177A1Q8N128 213 aaPredicted RBP4.72□□□□□ -1.65
MCF2-201ENST00000338585 TBC1D5Q92609 795 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 CUL5Q93034 780 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 HOOK2Q96ED9 719 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 EPSTI1Q96J88 318 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 TSPY26PQ9H489 355 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 TAF1DQ9H5J8 278 aaPredicted RBP4.72□□□□□ -1.65
MCF2-201ENST00000338585 PICK1Q9NRD5 415 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 KCNH3Q9ULD8 1083 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 SNCAIPQ9Y6H5 919 aa4.72□□□□□ -1.65
MCF2-201ENST00000338585 FAM237AA0A1B0GTK4 181 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 MEIS2O14770 477 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 FOXN1O15353 648 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 CCNT1O60563 726 aaKnown RBP4.71□□□□□ -1.66
MCF2-201ENST00000338585 TDP2O95551 362 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 CDC25AP30304 524 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 SYKP43405 635 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 MRPL12P52815 198 aaKnown RBP4.71□□□□□ -1.66
MCF2-201ENST00000338585 LONRF3Q496Y0 759 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 RBM43Q6ZSC3 357 aaKnown RBP4.71□□□□□ -1.66
MCF2-201ENST00000338585 USP50Q70EL3 339 aaPredicted RBP4.71□□□□□ -1.66
MCF2-201ENST00000338585 PDILTQ8N807 584 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 ZNF280CQ8ND82 737 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 CHURC1Q8WUH1 139 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms