RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 USP49Q70CQ1 688 aa17.59■□□□□ 0.41
LIMS1-202ENST00000338045 PANK2Q9BZ23 570 aa17.59■□□□□ 0.41
LIMS1-202ENST00000338045 TMEM60Q9H2L4 133 aa17.59■□□□□ 0.41
LIMS1-202ENST00000338045 VWA3AA6NCI4 1184 aa17.58■□□□□ 0.41
LIMS1-202ENST00000338045 GRIN3BO60391 1043 aa17.58■□□□□ 0.41
LIMS1-202ENST00000338045 PTPRAP18433 802 aa17.58■□□□□ 0.41
LIMS1-202ENST00000338045 LETM2Q2VYF4 491 aa17.58■□□□□ 0.41
LIMS1-202ENST00000338045 SASS6Q6UVJ0 657 aa17.58■□□□□ 0.41
LIMS1-202ENST00000338045 KRBA2Q6ZNG9 492 aa17.58■□□□□ 0.41
LIMS1-202ENST00000338045 USP50Q70EL3 339 aaPredicted RBP17.58■□□□□ 0.41
LIMS1-202ENST00000338045 ZKSCAN4Q969J2 545 aaPredicted RBP17.58■□□□□ 0.41
LIMS1-202ENST00000338045 DCPSQ96C86 337 aaKnown RBP17.58■□□□□ 0.41
LIMS1-202ENST00000338045 MEIS2O14770 477 aa17.58■□□□□ 0.4
LIMS1-202ENST00000338045 LONP1P36776 959 aaKnown RBP17.58■□□□□ 0.4
LIMS1-202ENST00000338045 LONRF3Q496Y0 759 aa17.58■□□□□ 0.4
LIMS1-202ENST00000338045 MCTP2Q6DN12 878 aa17.58■□□□□ 0.4
LIMS1-202ENST00000338045 RNF214Q8ND24 703 aa17.58■□□□□ 0.4
LIMS1-202ENST00000338045 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.58■□□□□ 0.4
LIMS1-202ENST00000338045 SYMPKQ92797 1274 aaKnown RBP17.58■□□□□ 0.4
LIMS1-202ENST00000338045 AS3MTQ9HBK9 375 aa17.58■□□□□ 0.4
LIMS1-202ENST00000338045 PICK1Q9NRD5 415 aa17.58■□□□□ 0.4
LIMS1-202ENST00000338045 KIAA1468Q9P260 1216 aa17.58■□□□□ 0.4
LIMS1-202ENST00000338045 GLTPD2A6NH11 291 aa17.57■□□□□ 0.4
LIMS1-202ENST00000338045 OPLAHO14841 1288 aa17.57■□□□□ 0.4
LIMS1-202ENST00000338045 CCNT1O60563 726 aaKnown RBP17.57■□□□□ 0.4
LIMS1-202ENST00000338045 USP14P54578 494 aa17.57■□□□□ 0.4
LIMS1-202ENST00000338045 AP3B2Q13367 1082 aa17.57■□□□□ 0.4
LIMS1-202ENST00000338045 SULF1Q8IWU6 871 aa17.57■□□□□ 0.4
LIMS1-202ENST00000338045 ZC3H15Q8WU90 426 aaKnown RBP17.57■□□□□ 0.4
LIMS1-202ENST00000338045 KIFC2Q96AC6 838 aa17.57■□□□□ 0.4
LIMS1-202ENST00000338045 EPSTI1Q96J88 318 aa17.57■□□□□ 0.4
LIMS1-202ENST00000338045 EMILIN3Q9NT22 766 aa17.57■□□□□ 0.4
LIMS1-202ENST00000338045 FBXO28Q9NVF7 368 aa17.57■□□□□ 0.4
LIMS1-202ENST00000338045 USP17L15C9J2P7 530 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 USP17L13C9JLJ4 530 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 USP17L11C9JVI0 530 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 USP17L18D6R9N7 530 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 USP17L22D6RA61 530 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 USP17L17D6RBQ6 530 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 USP17L19D6RCP7 530 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 USP17L20D6RJB6 530 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 POLR2DO15514 142 aaKnown RBP17.56■□□□□ 0.4
LIMS1-202ENST00000338045 NEMFO60524 1076 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 BACE1P56817 501 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 USP17L24Q0WX57 530 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 SPP2Q13103 211 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 MTMR2Q13614 643 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 USH1GQ495M9 461 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 PPP4R3AQ6IN85 833 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 USP17L6PQ6QN14 398 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 ZNF280CQ8ND82 737 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 FZD1Q9UP38 647 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 PIK3CDO00329 1044 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 USP2O75604 605 aaPredicted RBP17.56■□□□□ 0.4
LIMS1-202ENST00000338045 OR52Z1P0C646 297 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 UVSSAQ2YD98 709 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 DTHD1Q6ZMT9 781 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 CNNM3Q8NE01 707 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 C12orf42Q96LP6 360 aa17.56■□□□□ 0.4
LIMS1-202ENST00000338045 A0A087X0B3 334 aa17.55■□□□□ 0.4
LIMS1-202ENST00000338045 ACTN4O43707 911 aaKnown RBP17.55■□□□□ 0.4
LIMS1-202ENST00000338045 CAVIN2O95810 425 aa17.55■□□□□ 0.4
LIMS1-202ENST00000338045 VCAM1P19320 739 aa17.55■□□□□ 0.4
LIMS1-202ENST00000338045 EPHX2P34913 555 aa17.55■□□□□ 0.4
LIMS1-202ENST00000338045 PRPF38AQ8NAV1 312 aaKnown RBP17.55■□□□□ 0.4
LIMS1-202ENST00000338045 CRYGNQ8WXF5 182 aa17.55■□□□□ 0.4
LIMS1-202ENST00000338045 TUBE1Q9UJT0 475 aa17.55■□□□□ 0.4
LIMS1-202ENST00000338045 PHIPQ8WWQ0 1821 aa17.55■□□□□ 0.4
LIMS1-202ENST00000338045 ADM5C9JUS6 153 aa17.54■□□□□ 0.4
LIMS1-202ENST00000338045 FOSP01100 380 aaPredicted RBP17.54■□□□□ 0.4
LIMS1-202ENST00000338045 MDM2Q00987 491 aaPredicted RBP17.54■□□□□ 0.4
LIMS1-202ENST00000338045 STX1AQ16623 288 aa17.54■□□□□ 0.4
LIMS1-202ENST00000338045 ANO6Q4KMQ2 910 aa17.54■□□□□ 0.4
LIMS1-202ENST00000338045 FAM200AQ8TCP9 573 aa17.54■□□□□ 0.4
LIMS1-202ENST00000338045 MTMR9Q96QG7 549 aa17.54■□□□□ 0.4
LIMS1-202ENST00000338045 P2RX7Q99572 595 aaKnown RBP17.54■□□□□ 0.4
LIMS1-202ENST00000338045 SLF1Q9BQI6 1058 aa17.54■□□□□ 0.4
LIMS1-202ENST00000338045 ANO3Q9BYT9 981 aa17.54■□□□□ 0.4
LIMS1-202ENST00000338045 PAPPA2Q9BXP8 1791 aa17.54■□□□□ 0.4
LIMS1-202ENST00000338045 C19orf81C9J6K1 198 aa17.54■□□□□ 0.4
LIMS1-202ENST00000338045 GCFC2P16383 781 aaKnown RBP17.54■□□□□ 0.4
LIMS1-202ENST00000338045 DGKZQ13574 1117 aa17.54■□□□□ 0.4
LIMS1-202ENST00000338045 KANK3Q6NY19 840 aa17.54■□□□□ 0.4
LIMS1-202ENST00000338045 KRT26Q7Z3Y9 468 aa17.54■□□□□ 0.4
LIMS1-202ENST00000338045 ERCC4Q92889 916 aaPredicted RBP17.54■□□□□ 0.4
LIMS1-202ENST00000338045 NAP1L4Q99733 375 aaKnown RBP17.54■□□□□ 0.4
LIMS1-202ENST00000338045 PYM1Q9BRP8 204 aaKnown RBP17.54■□□□□ 0.4
LIMS1-202ENST00000338045 USP25Q9UHP3 1055 aa17.54■□□□□ 0.4
LIMS1-202ENST00000338045 SERTAD1Q9UHV2 236 aa17.54■□□□□ 0.4
LIMS1-202ENST00000338045 ZHX2Q9Y6X8 837 aa17.54■□□□□ 0.4
LIMS1-202ENST00000338045 TDP2O95551 362 aa17.53■□□□□ 0.4
LIMS1-202ENST00000338045 TAL1P17542 331 aaPredicted RBP17.53■□□□□ 0.4
LIMS1-202ENST00000338045 USP11P51784 963 aa17.53■□□□□ 0.4
LIMS1-202ENST00000338045 CCDC174Q6PII3 467 aa17.53■□□□□ 0.4
LIMS1-202ENST00000338045 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.53■□□□□ 0.4
LIMS1-202ENST00000338045 POTEDQ86YR6 584 aa17.53■□□□□ 0.4
LIMS1-202ENST00000338045 PDILTQ8N807 584 aa17.53■□□□□ 0.4
LIMS1-202ENST00000338045 AK8Q96MA6 479 aa17.53■□□□□ 0.4
LIMS1-202ENST00000338045 ANO10Q9NW15 660 aa17.53■□□□□ 0.4
LIMS1-202ENST00000338045 SCN4AP35499 1836 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms