RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 A1CFQ9NQ94 594 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-201ENST00000301897 Q9Y3F1 56 aa17.54■□□□□ 0.4
CCDC88B-201ENST00000301897 TTC41PQ6P2S7 1318 aa17.53■□□□□ 0.4
CCDC88B-201ENST00000301897 M0R2C6 588 aa17.53■□□□□ 0.4
CCDC88B-201ENST00000301897 FGBP02675 491 aa17.53■□□□□ 0.4
CCDC88B-201ENST00000301897 IRX5P78411 483 aaPredicted RBP17.53■□□□□ 0.4
CCDC88B-201ENST00000301897 TFAP4Q01664 338 aa17.53■□□□□ 0.4
CCDC88B-201ENST00000301897 IQSEC1Q6DN90 963 aa17.53■□□□□ 0.4
CCDC88B-201ENST00000301897 TRERF1Q96PN7 1200 aa17.53■□□□□ 0.4
CCDC88B-201ENST00000301897 GNEQ9Y223 722 aaKnown RBP17.53■□□□□ 0.4
CCDC88B-201ENST00000301897 TNFRSF10AO00220 468 aa17.52■□□□□ 0.4
CCDC88B-201ENST00000301897 ACRP10323 421 aa17.52■□□□□ 0.4
CCDC88B-201ENST00000301897 CYP2C18P33260 490 aa17.52■□□□□ 0.4
CCDC88B-201ENST00000301897 BEX3Q00994 111 aa17.52■□□□□ 0.4
CCDC88B-201ENST00000301897 PPARAQ07869 468 aa17.52■□□□□ 0.4
CCDC88B-201ENST00000301897 ITGA7Q13683 1181 aa17.52■□□□□ 0.4
CCDC88B-201ENST00000301897 CXCL17Q6UXB2 119 aa17.52■□□□□ 0.4
CCDC88B-201ENST00000301897 USP38Q8NB14 1042 aa17.52■□□□□ 0.4
CCDC88B-201ENST00000301897 AGBL1Q96MI9 1066 aa17.52■□□□□ 0.4
CCDC88B-201ENST00000301897 PRDM12Q9H4Q4 367 aa17.52■□□□□ 0.4
CCDC88B-201ENST00000301897 ZNF536O15090 1300 aa17.51■□□□□ 0.39
CCDC88B-201ENST00000301897 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.51■□□□□ 0.39
CCDC88B-201ENST00000301897 SOWAHBA6NEL2 793 aa17.51■□□□□ 0.39
CCDC88B-201ENST00000301897 GRXCR1A8MXD5 290 aa17.51■□□□□ 0.39
CCDC88B-201ENST00000301897 ALAS1P13196 640 aa17.51■□□□□ 0.39
CCDC88B-201ENST00000301897 MCCP23508 829 aa17.51■□□□□ 0.39
CCDC88B-201ENST00000301897 PBX2P40425 430 aa17.51■□□□□ 0.39
CCDC88B-201ENST00000301897 RCSD1Q6JBY9 416 aa17.51■□□□□ 0.39
CCDC88B-201ENST00000301897 RPUSD2Q8IZ73 545 aaKnown RBP17.51■□□□□ 0.39
CCDC88B-201ENST00000301897 SLC28A3Q9HAS3 691 aa17.51■□□□□ 0.39
CCDC88B-201ENST00000301897 VTA1Q9NP79 307 aa17.51■□□□□ 0.39
CCDC88B-201ENST00000301897 THEGQ9P2T0 379 aa17.51■□□□□ 0.39
CCDC88B-201ENST00000301897 ASTN1O14525 1302 aa17.5■□□□□ 0.39
CCDC88B-201ENST00000301897 LOC102724159A0A0B4J2E5 919 aa17.5■□□□□ 0.39
CCDC88B-201ENST00000301897 TSPY2A6NKD2 308 aa17.5■□□□□ 0.39
CCDC88B-201ENST00000301897 DYNC1LI2O43237 492 aaPredicted RBP17.5■□□□□ 0.39
CCDC88B-201ENST00000301897 PWP2Q15269 919 aaKnown RBP17.5■□□□□ 0.39
CCDC88B-201ENST00000301897 TSHZ3Q63HK5 1081 aa17.5■□□□□ 0.39
CCDC88B-201ENST00000301897 CYP39A1Q9NYL5 469 aa17.5■□□□□ 0.39
CCDC88B-201ENST00000301897 STX8Q9UNK0 236 aa17.5■□□□□ 0.39
CCDC88B-201ENST00000301897 CHD7Q9P2D1 2997 aa17.5■□□□□ 0.39
CCDC88B-201ENST00000301897 LRRC37A2A6NM11 1700 aa17.5■□□□□ 0.39
CCDC88B-201ENST00000301897 SUPT20HL2P0C7V6 817 aa17.49■□□□□ 0.39
CCDC88B-201ENST00000301897 SMPD1P17405 629 aa17.49■□□□□ 0.39
CCDC88B-201ENST00000301897 ZMYM1Q5SVZ6 1142 aa17.49■□□□□ 0.39
CCDC88B-201ENST00000301897 C20orf194Q5TEA3 1177 aa17.49■□□□□ 0.39
CCDC88B-201ENST00000301897 FSD1Q9BTV5 496 aa17.49■□□□□ 0.39
CCDC88B-201ENST00000301897 NOC4LQ9BVI4 516 aaKnown RBP17.49■□□□□ 0.39
CCDC88B-201ENST00000301897 TSPYL2Q9H2G4 693 aaPredicted RBP17.49■□□□□ 0.39
CCDC88B-201ENST00000301897 ADD3Q9UEY8 706 aaKnown RBP17.49■□□□□ 0.39
CCDC88B-201ENST00000301897 ICAM1P05362 532 aa17.48■□□□□ 0.39
CCDC88B-201ENST00000301897 PFKMP08237 780 aa17.48■□□□□ 0.39
CCDC88B-201ENST00000301897 MRPS5P82675 430 aaKnown RBP17.48■□□□□ 0.39
CCDC88B-201ENST00000301897 TAPT1Q6NXT6 567 aa17.48■□□□□ 0.39
CCDC88B-201ENST00000301897 KCTD1Q719H9 257 aa17.48■□□□□ 0.39
CCDC88B-201ENST00000301897 IL27Q8NEV9 243 aa17.48■□□□□ 0.39
CCDC88B-201ENST00000301897 MORC4Q8TE76 937 aa17.48■□□□□ 0.39
CCDC88B-201ENST00000301897 PPM1EQ8WY54 764 aa17.48■□□□□ 0.39
CCDC88B-201ENST00000301897 ASB2Q96Q27 587 aa17.48■□□□□ 0.39
CCDC88B-201ENST00000301897 POLR3EQ9NVU0 708 aa17.48■□□□□ 0.39
CCDC88B-201ENST00000301897 PNMA2Q9UL42 364 aa17.48■□□□□ 0.39
CCDC88B-201ENST00000301897 CCPG1Q9ULG6 757 aa17.48■□□□□ 0.39
CCDC88B-201ENST00000301897 PRR12Q9ULL5 1215 aa17.48■□□□□ 0.39
CCDC88B-201ENST00000301897 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.48■□□□□ 0.39
CCDC88B-201ENST00000301897 SLC4A7Q9Y6M7 1214 aa17.48■□□□□ 0.39
CCDC88B-201ENST00000301897 TRANK1O15050 2925 aa17.48■□□□□ 0.39
CCDC88B-201ENST00000301897 IGFBP4P22692 258 aa17.47■□□□□ 0.39
CCDC88B-201ENST00000301897 DUSP28Q4G0W2 176 aa17.47■□□□□ 0.39
CCDC88B-201ENST00000301897 NSMFQ6X4W1 530 aa17.47■□□□□ 0.39
CCDC88B-201ENST00000301897 KIAA1211Q6ZU35 1233 aa17.47■□□□□ 0.39
CCDC88B-201ENST00000301897 OTOP2Q7RTS6 562 aa17.47■□□□□ 0.39
CCDC88B-201ENST00000301897 FBXO16Q8IX29 292 aaPredicted RBP17.47■□□□□ 0.39
CCDC88B-201ENST00000301897 DCAF4Q8WV16 495 aa17.47■□□□□ 0.39
CCDC88B-201ENST00000301897 SEC62Q99442 399 aaKnown RBP17.47■□□□□ 0.39
CCDC88B-201ENST00000301897 NKX2-4Q9H2Z4 354 aa17.47■□□□□ 0.39
CCDC88B-201ENST00000301897 CXXC1Q9P0U4 656 aaPredicted RBP17.47■□□□□ 0.39
CCDC88B-201ENST00000301897 GBF1Q92538 1859 aa17.47■□□□□ 0.39
CCDC88B-201ENST00000301897 GRIN2DO15399 1336 aa17.47■□□□□ 0.39
CCDC88B-201ENST00000301897 B4GALT4O60513 344 aa17.46■□□□□ 0.39
CCDC88B-201ENST00000301897 CPT1AP50416 773 aa17.46■□□□□ 0.39
CCDC88B-201ENST00000301897 CCL23P55773 120 aa17.46■□□□□ 0.39
CCDC88B-201ENST00000301897 BRDTQ58F21 947 aaPredicted RBP17.46■□□□□ 0.39
CCDC88B-201ENST00000301897 MUM1L1Q5H9M0 696 aa17.46■□□□□ 0.39
CCDC88B-201ENST00000301897 PI4K2BQ8TCG2 481 aa17.46■□□□□ 0.39
CCDC88B-201ENST00000301897 TRPV6Q9H1D0 765 aa17.46■□□□□ 0.39
CCDC88B-201ENST00000301897 ALDH8A1Q9H2A2 487 aaPredicted RBP17.46■□□□□ 0.39
CCDC88B-201ENST00000301897 PDGFCQ9NRA1 345 aa17.46■□□□□ 0.39
CCDC88B-201ENST00000301897 ANAPC4Q9UJX5 808 aa17.46■□□□□ 0.39
CCDC88B-201ENST00000301897 PCDHA11Q9Y5I1 949 aa17.46■□□□□ 0.39
CCDC88B-201ENST00000301897 RAD50Q92878 1312 aa17.46■□□□□ 0.38
CCDC88B-201ENST00000301897 ADGRE1Q14246 886 aa17.45■□□□□ 0.38
CCDC88B-201ENST00000301897 CCDC96Q2M329 555 aa17.45■□□□□ 0.38
CCDC88B-201ENST00000301897 EEPD1Q7L9B9 569 aa17.45■□□□□ 0.38
CCDC88B-201ENST00000301897 MPHOSPH6Q99547 160 aaKnown RBP17.45■□□□□ 0.38
CCDC88B-201ENST00000301897 RANBP17Q9H2T7 1088 aaKnown RBP17.45■□□□□ 0.38
CCDC88B-201ENST00000301897 GPHNQ9NQX3 736 aaPredicted RBP17.45■□□□□ 0.38
CCDC88B-201ENST00000301897 IL17RBQ9NRM6 502 aa17.45■□□□□ 0.38
CCDC88B-201ENST00000301897 UMODL1Q5DID0 1318 aa17.45■□□□□ 0.38
CCDC88B-201ENST00000301897 NKRFO15226 690 aaKnown RBP eCLIP17.44■□□□□ 0.38
CCDC88B-201ENST00000301897 ORC4O43929 436 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms