RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 ZMYM6O95789 1325 aa15.06■□□□□ 0
CD44-203ENST00000278386 FRMPD2Q68DX3 1309 aaPredicted RBP15.06■□□□□ 0
CD44-203ENST00000278386 CCDC171Q6TFL3 1326 aa15.06■□□□□ 0
CD44-203ENST00000278386 SOWAHBA6NEL2 793 aa15.05■□□□□ -0
CD44-203ENST00000278386 FGAP02671 866 aa15.05■□□□□ -0
CD44-203ENST00000278386 HSPD1P10809 573 aaKnown RBP15.05■□□□□ -0
CD44-203ENST00000278386 SLC16A2P36021 539 aa15.05■□□□□ -0
CD44-203ENST00000278386 EPHB4P54760 987 aa15.05■□□□□ -0
CD44-203ENST00000278386 SMAD3P84022 425 aaKnown RBP15.05■□□□□ -0
CD44-203ENST00000278386 BEX3Q00994 111 aa15.05■□□□□ -0
CD44-203ENST00000278386 MUM1L1Q5H9M0 696 aa15.05■□□□□ -0
CD44-203ENST00000278386 SYDE2Q5VT97 1194 aa15.05■□□□□ -0
CD44-203ENST00000278386 FBXO16Q8IX29 292 aaPredicted RBP15.05■□□□□ -0
CD44-203ENST00000278386 CYP39A1Q9NYL5 469 aa15.05■□□□□ -0
CD44-203ENST00000278386 GBF1Q92538 1859 aa15.05■□□□□ -0
CD44-203ENST00000278386 TLR3O15455 904 aaKnown RBP15.04■□□□□ -0
CD44-203ENST00000278386 ICAM1P05362 532 aa15.04■□□□□ -0
CD44-203ENST00000278386 TOP1P11387 765 aaKnown RBP15.04■□□□□ -0
CD44-203ENST00000278386 TTBK2Q6IQ55 1244 aa15.04■□□□□ -0
CD44-203ENST00000278386 B4GALNT3Q6L9W6 998 aa15.04■□□□□ -0
CD44-203ENST00000278386 EEPD1Q7L9B9 569 aa15.04■□□□□ -0
CD44-203ENST00000278386 TMEM47Q9BQJ4 181 aa15.04■□□□□ -0
CD44-203ENST00000278386 RANBP17Q9H2T7 1088 aaKnown RBP15.04■□□□□ -0
CD44-203ENST00000278386 GPCPD1Q9NPB8 672 aa15.04■□□□□ -0
CD44-203ENST00000278386 TBX21Q9UL17 535 aa15.04■□□□□ -0
CD44-203ENST00000278386 DDX49Q9Y6V7 483 aaKnown RBP15.04■□□□□ -0
CD44-203ENST00000278386 CDH23Q9H251 3354 aa15.04■□□□□ -0
CD44-203ENST00000278386 ASTN1O14525 1302 aa15.03■□□□□ -0
CD44-203ENST00000278386 ARVCFO00192 962 aa15.03■□□□□ -0
CD44-203ENST00000278386 TIMP1P01033 207 aa15.03■□□□□ -0
CD44-203ENST00000278386 FGRP09769 529 aa15.03■□□□□ -0
CD44-203ENST00000278386 MFAP1P55081 439 aaKnown RBP15.03■□□□□ -0
CD44-203ENST00000278386 PPP1R12CQ9BZL4 782 aa15.03■□□□□ -0
CD44-203ENST00000278386 AP5M1Q9H0R1 490 aa15.03■□□□□ -0
CD44-203ENST00000278386 UNC80Q8N2C7 3258 aa15.03■□□□□ -0
CD44-203ENST00000278386 PTPDC1A2A3K4 754 aa15.02■□□□□ -0
CD44-203ENST00000278386 ZEB2O60315 1214 aa15.02■□□□□ -0
CD44-203ENST00000278386 NOVP48745 357 aa15.02■□□□□ -0
CD44-203ENST00000278386 PPIGQ13427 754 aaKnown RBP eCLIP15.02■□□□□ -0
CD44-203ENST00000278386 CXCL17Q6UXB2 119 aa15.02■□□□□ -0
CD44-203ENST00000278386 MFSD6Q6ZSS7 791 aa15.02■□□□□ -0
CD44-203ENST00000278386 TBC1D10CQ8IV04 446 aa15.02■□□□□ -0
CD44-203ENST00000278386 CDX2Q99626 313 aaPredicted RBP15.02■□□□□ -0
CD44-203ENST00000278386 RWDD1Q9H446 243 aaPredicted RBP15.02■□□□□ -0
CD44-203ENST00000278386 RNF41Q9H4P4 317 aaPredicted RBP15.02■□□□□ -0
CD44-203ENST00000278386 EYSQ5T1H1 3165 aa15.01□□□□□ -0.01
CD44-203ENST00000278386 NEDD4P46934 1319 aa15.01□□□□□ -0.01
CD44-203ENST00000278386 NFIBO00712 420 aa15.01□□□□□ -0.01
CD44-203ENST00000278386 CTAGE5O15320 804 aa15.01□□□□□ -0.01
CD44-203ENST00000278386 PDHBP11177 359 aa15.01□□□□□ -0.01
CD44-203ENST00000278386 SMPD1P17405 629 aa15.01□□□□□ -0.01
CD44-203ENST00000278386 PTGS1P23219 599 aa15.01□□□□□ -0.01
CD44-203ENST00000278386 CDK7P50613 346 aa15.01□□□□□ -0.01
CD44-203ENST00000278386 AAMPQ13685 434 aa15.01□□□□□ -0.01
CD44-203ENST00000278386 FSCN1Q16658 493 aaKnown RBP15.01□□□□□ -0.01
CD44-203ENST00000278386 AKNAD1Q5T1N1 836 aa15.01□□□□□ -0.01
CD44-203ENST00000278386 MFSD5Q6N075 450 aa15.01□□□□□ -0.01
CD44-203ENST00000278386 BTNL9Q6UXG8 535 aa15.01□□□□□ -0.01
CD44-203ENST00000278386 TICAM2Q86XR7 235 aa15.01□□□□□ -0.01
CD44-203ENST00000278386 FAM126BQ8IXS8 530 aa15.01□□□□□ -0.01
CD44-203ENST00000278386 MYLIPQ8WY64 445 aa15.01□□□□□ -0.01
CD44-203ENST00000278386 PURBQ96QR8 312 aaKnown RBP15.01□□□□□ -0.01
CD44-203ENST00000278386 TTYH1Q9H313 450 aaPredicted RBP15.01□□□□□ -0.01
CD44-203ENST00000278386 SEMA6BQ9H3T3 888 aa15.01□□□□□ -0.01
CD44-203ENST00000278386 VTA1Q9NP79 307 aa15.01□□□□□ -0.01
CD44-203ENST00000278386 PDGFCQ9NRA1 345 aa15.01□□□□□ -0.01
CD44-203ENST00000278386 DIAPH3Q9NSV4 1193 aa15.01□□□□□ -0.01
CD44-203ENST00000278386 TCP11L1Q9NUJ3 509 aa15.01□□□□□ -0.01
CD44-203ENST00000278386 ADD3Q9UEY8 706 aaKnown RBP15.01□□□□□ -0.01
CD44-203ENST00000278386 GNEQ9Y223 722 aaKnown RBP15.01□□□□□ -0.01
CD44-203ENST00000278386 DYNC1LI2O43237 492 aaPredicted RBP15□□□□□ -0.01
CD44-203ENST00000278386 CABYRO75952 493 aa15□□□□□ -0.01
CD44-203ENST00000278386 PCP11498 1178 aaKnown RBP15□□□□□ -0.01
CD44-203ENST00000278386 ALDH5A1P51649 535 aaPredicted RBP15□□□□□ -0.01
CD44-203ENST00000278386 BAATQ14032 418 aaPredicted RBP15□□□□□ -0.01
CD44-203ENST00000278386 SLC30A10Q6XR72 485 aa15□□□□□ -0.01
CD44-203ENST00000278386 KIAA1211Q6ZU35 1233 aa15□□□□□ -0.01
CD44-203ENST00000278386 PHF6Q8IWS0 365 aaKnown RBP eCLIP15□□□□□ -0.01
CD44-203ENST00000278386 SMC5Q8IY18 1101 aa15□□□□□ -0.01
CD44-203ENST00000278386 TMEM199Q8N511 208 aa15□□□□□ -0.01
CD44-203ENST00000278386 MAFAQ8NHW3 353 aaPredicted RBP15□□□□□ -0.01
CD44-203ENST00000278386 BUD13Q9BRD0 619 aaKnown RBP eCLIP15□□□□□ -0.01
CD44-203ENST00000278386 TMEM265A0A087WTH1 108 aa14.99□□□□□ -0.01
CD44-203ENST00000278386 FOSL2P15408 326 aa14.99□□□□□ -0.01
CD44-203ENST00000278386 CSF2RAP15509 400 aa14.99□□□□□ -0.01
CD44-203ENST00000278386 SDSP20132 328 aa14.99□□□□□ -0.01
CD44-203ENST00000278386 DNAJB2P25686 324 aa14.99□□□□□ -0.01
CD44-203ENST00000278386 CALML3P27482 149 aa14.99□□□□□ -0.01
CD44-203ENST00000278386 NKX3-2P78367 333 aa14.99□□□□□ -0.01
CD44-203ENST00000278386 ZNF543Q08ER8 600 aa14.99□□□□□ -0.01
CD44-203ENST00000278386 IQSEC1Q6DN90 963 aa14.99□□□□□ -0.01
CD44-203ENST00000278386 TAPT1Q6NXT6 567 aa14.99□□□□□ -0.01
CD44-203ENST00000278386 PSRC1Q6PGN9 363 aaPredicted RBP14.99□□□□□ -0.01
CD44-203ENST00000278386 CHD1LQ86WJ1 897 aa14.99□□□□□ -0.01
CD44-203ENST00000278386 ESR2Q92731 530 aa14.99□□□□□ -0.01
CD44-203ENST00000278386 ZKSCAN3Q9BRR0 538 aa14.99□□□□□ -0.01
CD44-203ENST00000278386 KIAA1217Q5T5P2 1943 aa14.99□□□□□ -0.01
CD44-203ENST00000278386 TANC1Q9C0D5 1861 aa14.99□□□□□ -0.01
CD44-203ENST00000278386 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.98□□□□□ -0.01
CD44-203ENST00000278386 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms