RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 INTUQ9ULD6 942 aa12.4□□□□□ -0.43
PTPN4-201ENST00000263708 ANGEL1Q9UNK9 670 aaKnown RBP12.4□□□□□ -0.43
PTPN4-201ENST00000263708 DLGAP5Q15398 846 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 AKAP4Q5JQC9 854 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 PPM1KQ8N3J5 372 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 NCLNQ969V3 563 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 PANK4Q9NVE7 773 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 RPS6KB1P23443 525 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 FRA10AC1Q70Z53 315 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 EFHD1Q9BUP0 239 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 RAD50Q92878 1312 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 STAMQ92783 540 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 LRRD1A4D1F6 860 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 SERPINI2O75830 405 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 EPHB1P54762 984 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 CAPN11Q9UMQ6 739 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 CDCA7Q9BWT1 371 aaPredicted RBP12.39□□□□□ -0.43
PTPN4-201ENST00000263708 POLIQ9UNA4 740 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 SAR1BQ9Y6B6 198 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 NLRP12P59046 1061 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 TMEM87BQ96K49 555 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 KIF17Q9P2E2 1029 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 SNCBQ16143 134 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 NPHP3Q7Z494 1330 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 WDR64B1ANS9 1081 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 PPIP5K2O43314 1243 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 PTK2BQ14289 1009 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 KIF19Q2TAC6 998 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 DPP9Q86TI2 863 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 SUPT20HQ8NEM7 779 aa12.39□□□□□ -0.43
PTPN4-201ENST00000263708 EFCAB14O75071 495 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 LONP1P36776 959 aaKnown RBP12.38□□□□□ -0.43
PTPN4-201ENST00000263708 PLCH2O75038 1416 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 TAF5LO75529 589 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 TOM1L1O75674 476 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 KCNA1Q09470 495 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 PPP2R5EQ16537 467 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 DPY19L2Q6NUT2 758 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 TRMT44Q8IYL2 757 aaKnown RBP12.38□□□□□ -0.43
PTPN4-201ENST00000263708 NT5C3AQ9H0P0 336 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 SEPT9Q9UHD8 586 aaPredicted RBP12.38□□□□□ -0.43
PTPN4-201ENST00000263708 N4BP1O75113 896 aaKnown RBP12.38□□□□□ -0.43
PTPN4-201ENST00000263708 TAF11Q15544 211 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 DCPSQ96C86 337 aaKnown RBP12.38□□□□□ -0.43
PTPN4-201ENST00000263708 CPA1P15085 419 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 ZNF18P17022 549 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 NSUN2Q08J23 767 aaKnown RBP eCLIP12.38□□□□□ -0.43
PTPN4-201ENST00000263708 SPOPLQ6IQ16 392 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 TRIM67Q6ZTA4 783 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 CCDC84Q86UT8 332 aaPredicted RBP12.38□□□□□ -0.43
PTPN4-201ENST00000263708 RPSAP08865 295 aaKnown RBP12.38□□□□□ -0.43
PTPN4-201ENST00000263708 NCF2P19878 526 aaPredicted RBP12.38□□□□□ -0.43
PTPN4-201ENST00000263708 ANXA13P27216 316 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 CCDC24Q8N4L8 307 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 THRAP3Q9Y2W1 955 aaKnown RBP12.38□□□□□ -0.43
PTPN4-201ENST00000263708 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.38□□□□□ -0.43
PTPN4-201ENST00000263708 CCDC127Q96BQ5 260 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 FAM89AQ96GI7 184 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 ANKRD36BP1Q96IX9 119 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 SCINQ9Y6U3 715 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 PDE6BP35913 854 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 ADKP55263 362 aaKnown RBP12.38□□□□□ -0.43
PTPN4-201ENST00000263708 PNOCQ13519 176 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 LRCH2Q5VUJ6 765 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 ATG16L1Q676U5 607 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 DEPDC1BQ8WUY9 529 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 GRIN2BQ13224 1484 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 VGLL3A8MV65 326 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 TECP42680 631 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 CERS3Q8IU89 383 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 GSDMAQ96QA5 445 aa12.38□□□□□ -0.43
PTPN4-201ENST00000263708 ADCY1Q08828 1119 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 EFCAB13Q8IY85 973 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 PASKQ96RG2 1323 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 GOLGA8KD6RF30 607 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 FAM160B1Q5W0V3 765 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 KRT27Q7Z3Y8 459 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 OTULINQ96BN8 352 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 IFNA8P32881 189 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 TTC25Q96NG3 672 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 KCNJ14Q9UNX9 436 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 MAN1A2O60476 641 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 SLC8A1P32418 973 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 KLC3Q6P597 504 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.37□□□□□ -0.43
PTPN4-201ENST00000263708 DDX17Q92841 729 aaKnown RBP12.37□□□□□ -0.43
PTPN4-201ENST00000263708 RPGRIP1Q96KN7 1286 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 CLCN1P35523 988 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 KCNJ18B7U540 433 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 KCNJ12Q14500 433 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 MLKLQ8NB16 471 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 LRRC59Q96AG4 307 aaKnown RBP12.37□□□□□ -0.43
PTPN4-201ENST00000263708 VPS54Q9P1Q0 977 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 PCDH11XQ9BZA7 1347 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 PCDH11YQ9BZA8 1340 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 DYNLT1P63172 113 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 PPHLN1Q8NEY8 458 aaKnown RBP12.37□□□□□ -0.43
PTPN4-201ENST00000263708 PAWRQ96IZ0 340 aaKnown RBP12.37□□□□□ -0.43
PTPN4-201ENST00000263708 PTPN23Q9H3S7 1636 aa12.37□□□□□ -0.43
PTPN4-201ENST00000263708 SYCE1LA8MT33 242 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms