RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ARHGEF2Q92974 986 aaKnown RBP11.81□□□□□ -0.52
CD44-201ENST00000263398 P2RX5Q93086 422 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 PUS7LQ9H0K6 701 aaKnown RBP11.81□□□□□ -0.52
CD44-201ENST00000263398 MAN1B1Q9UKM7 699 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 PCDHA4Q9UN74 947 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 MRPL11Q9Y3B7 192 aaKnown RBP11.81□□□□□ -0.52
CD44-201ENST00000263398 GBP1P32455 592 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 GABPB2Q8TAK5 448 aaPredicted RBP11.81□□□□□ -0.52
CD44-201ENST00000263398 CCDC17Q96LX7 622 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 PCDHA1Q9Y5I3 950 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 SPHKAPQ2M3C7 1700 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 ATP10DQ9P241 1426 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 TSNAXIP1Q2TAA8 658 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 GKAP1Q5VSY0 366 aaPredicted RBP11.81□□□□□ -0.52
CD44-201ENST00000263398 VSTM4Q8IW00 320 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 VPS52Q8N1B4 723 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 CCDC89Q8N998 374 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 VPS37BQ9H9H4 285 aa11.81□□□□□ -0.52
CD44-201ENST00000263398 ERBB3P21860 1342 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 DAPK3O43293 454 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 TBC1D8O95759 1140 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 RASSF2P50749 326 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 ATP1A2P50993 1020 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 FKBP3Q00688 224 aaKnown RBP11.8□□□□□ -0.52
CD44-201ENST00000263398 EHHADHQ08426 723 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 RBL2Q08999 1139 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 CERKLQ49MI3 558 aaPredicted RBP11.8□□□□□ -0.52
CD44-201ENST00000263398 ZNF658Q5TYW1 1059 aaPredicted RBP11.8□□□□□ -0.52
CD44-201ENST00000263398 SDCCAG8Q86SQ7 713 aaPredicted RBP11.8□□□□□ -0.52
CD44-201ENST00000263398 RIC8AQ9NPQ8 531 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 ZSWIM5Q9P217 1185 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 SRPRBQ9Y5M8 271 aaKnown RBP11.8□□□□□ -0.52
CD44-201ENST00000263398 GJA3Q9Y6H8 435 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 IFNB1P01574 187 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 YWHAEP62258 255 aaKnown RBP11.8□□□□□ -0.52
CD44-201ENST00000263398 IRX3P78415 501 aaPredicted RBP11.8□□□□□ -0.52
CD44-201ENST00000263398 ICA1Q05084 483 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 SLFN13Q68D06 897 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 FNBP4Q8N3X1 1017 aaPredicted RBP11.8□□□□□ -0.52
CD44-201ENST00000263398 SPTLC3Q9NUV7 552 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 BAIAP2L1Q9UHR4 511 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 GINS2Q9Y248 185 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 ABCC12Q96J65 1359 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 I3L4J1 428 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 POLR2MP0CAP2 368 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 GUCY2DQ02846 1103 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 PI16Q6UXB8 463 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 GRK7Q8WTQ7 553 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 DPH5Q9H2P9 285 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 STK32BQ9NY57 414 aa11.8□□□□□ -0.52
CD44-201ENST00000263398 TRIM37O94972 964 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 MRPS9P82933 396 aaKnown RBP11.79□□□□□ -0.52
CD44-201ENST00000263398 MAN2A1Q16706 1144 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 ASPRV1Q53RT3 343 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 SMYD4Q8IYR2 804 aaPredicted RBP11.79□□□□□ -0.52
CD44-201ENST00000263398 ANKRD42Q8N9B4 389 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 DEPTORQ8TB45 409 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 GJA10Q969M2 543 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 CEP152O94986 1710 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 KRT19P08727 400 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 GNPTABQ3T906 1256 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 BRDTQ58F21 947 aaPredicted RBP11.79□□□□□ -0.52
CD44-201ENST00000263398 KRT26Q7Z3Y9 468 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 C1orf112Q9NSG2 853 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 KIAA1024Q9UPX6 916 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 LEMD3Q9Y2U8 911 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 H0YCG3 227 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 ENC1O14682 589 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 GCFC2P16383 781 aaKnown RBP11.79□□□□□ -0.52
CD44-201ENST00000263398 RASSF7Q02833 373 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 AOC3Q16853 763 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 NLRP10Q86W26 655 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 PLA2G4DQ86XP0 818 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 AMNQ9BXJ7 453 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 KLHL14Q9P2G3 628 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 STK17AQ9UEE5 414 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 K7ENM7 598 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 PRPF3O43395 683 aaKnown RBP11.79□□□□□ -0.52
CD44-201ENST00000263398 CRKLP46109 303 aaKnown RBP11.79□□□□□ -0.52
CD44-201ENST00000263398 CLNS1AP54105 237 aaKnown RBP11.79□□□□□ -0.52
CD44-201ENST00000263398 GOLGA8FQ08AF8 430 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 GOLGA8DPQ0D2H9 430 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 SARM1Q6SZW1 724 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 PPM1KQ8N3J5 372 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.79□□□□□ -0.52
CD44-201ENST00000263398 RNF34Q969K3 372 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.79□□□□□ -0.52
CD44-201ENST00000263398 SAMSN1Q9NSI8 373 aaKnown RBP11.79□□□□□ -0.52
CD44-201ENST00000263398 ODF2LQ9ULJ1 636 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 TRPC6Q9Y210 931 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 CAPN7Q9Y6W3 813 aa11.79□□□□□ -0.52
CD44-201ENST00000263398 MADDQ8WXG6 1647 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 TROVE2P10155 538 aaKnown RBP eCLIP11.78□□□□□ -0.52
CD44-201ENST00000263398 GEN1Q17RS7 908 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 GRAMD1CQ8IYS0 662 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 RASGRP4Q8TDF6 673 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 PPP1R12CQ9BZL4 782 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 TRIM6Q9C030 488 aaPredicted RBP11.78□□□□□ -0.52
CD44-201ENST00000263398 RWDD2AQ9UIY3 292 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 IVNS1ABPQ9Y6Y0 642 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms