RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 PLS1Q14651 629 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 RPS6KA1Q15418 735 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 LETM2Q2VYF4 491 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 TMEM179Q6ZVK1 233 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 FNBP4Q8N3X1 1017 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 PNMA1Q8ND90 353 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 MAP3K20Q9NYL2 800 aaKnown RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 SPOPO43791 374 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 RINT1Q6NUQ1 792 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 MIER3Q7Z3K6 550 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 SMC1BQ8NDV3 1235 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 DEPTORQ8TB45 409 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 KIFC2Q96AC6 838 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 PDS5AQ29RF7 1337 aaKnown RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 I3L4J1 428 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 DDX5P17844 614 aaKnown RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 PICALMQ13492 652 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 ABCB5Q2M3G0 1257 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 EXOC4Q96A65 974 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 DDX25Q9UHL0 483 aaKnown RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 AMFRQ9UKV5 643 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 PCDHA12Q9UN75 941 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 AGTPBP1Q9UPW5 1226 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 FANCCQ00597 558 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 ITIH3Q06033 890 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 SLC39A14Q15043 492 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 CCDC38Q502W7 563 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 STAG1Q8WVM7 1258 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 MASTLQ96GX5 879 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 DBNDD2Q9BQY9 259 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 HAUS8Q9BT25 410 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 MUTP22033 750 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 MNAT1P51948 309 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 CHMP4BP1P59074 171 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 MRPS9P82933 396 aaKnown RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 LACTBP83111 547 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 TNFAIP2Q03169 654 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 ARHGEF16Q5VV41 709 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 C8orf74Q6P047 294 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 BARGINQ6ZT62 677 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 IL17REQ8NFR9 667 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 RLBP1P12271 317 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 ADD2P35612 726 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 PPARGP37231 505 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 HDLBPQ00341 1268 aaKnown RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 MRPL47Q9HD33 250 aaKnown RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 IFNKQ9P0W0 207 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 EEF2P13639 858 aaKnown RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 ICA1Q05084 483 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 KMT5BQ4FZB7 885 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 ENOSF1Q7L5Y1 443 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 PRPF31Q8WWY3 499 aaKnown RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 USP40Q9NVE5 1235 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 SYNPO2Q9UMS6 1093 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 NOD1Q9Y239 953 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 PALLDQ8WX93 1383 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 MACROD2A1Z1Q3 448 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 SART1O43290 800 aaKnown RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 MARCKSP29966 332 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 NR1H3Q13133 447 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 BIRC3Q13489 604 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 MSL1Q68DK7 614 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 EFHBQ8N7U6 833 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 NELFBQ8WX92 580 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 SERPINB13Q9UIV8 391 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 CTNND2Q9UQB3 1225 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 PNMA6FA0A0J9YX94 578 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 POLR2DO15514 142 aaKnown RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 CAV1Q03135 178 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 TRIM72Q6ZMU5 477 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 EFCAB13Q8IY85 973 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 RIOK1Q9BRS2 568 aaKnown RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 NARFQ9UHQ1 456 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 SMCO2A6NFE2 343 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 NOL3O60936 208 aaKnown RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 HSPD1P10809 573 aaKnown RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 GLE1Q53GS7 698 aaKnown RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 HERC4Q5GLZ8 1057 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-202ENST00000261517 PBKQ96KB5 322 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 ARHGAP23Q9P227 1491 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 ADGRB2O60241 1585 aa4.74□□□□□ -1.65
VPS13C-202ENST00000261517 E7EVH7 732 aa4.73□□□□□ -1.65
VPS13C-202ENST00000261517 EXOC3O60645 756 aa4.73□□□□□ -1.65
VPS13C-202ENST00000261517 STAM2O75886 525 aa4.73□□□□□ -1.65
VPS13C-202ENST00000261517 CLEC17AQ6ZS10 378 aa4.73□□□□□ -1.65
VPS13C-202ENST00000261517 DNAJC10Q8IXB1 793 aa4.73□□□□□ -1.65
VPS13C-202ENST00000261517 FAM20AQ96MK3 541 aa4.73□□□□□ -1.65
VPS13C-202ENST00000261517 PSMD1Q99460 953 aa4.73□□□□□ -1.65
VPS13C-202ENST00000261517 DNAJC25Q9H1X3 360 aa4.73□□□□□ -1.65
VPS13C-202ENST00000261517 V9GY48 417 aaPredicted RBP4.73□□□□□ -1.65
VPS13C-202ENST00000261517 USP17L3A6NCW0 530 aa4.73□□□□□ -1.65
VPS13C-202ENST00000261517 USP17L4A6NCW7 530 aa4.73□□□□□ -1.65
VPS13C-202ENST00000261517 GOLGA8KD6RF30 607 aa4.73□□□□□ -1.65
VPS13C-202ENST00000261517 KCNJ6P48051 423 aa4.73□□□□□ -1.65
VPS13C-202ENST00000261517 RASA3Q14644 834 aa4.73□□□□□ -1.65
VPS13C-202ENST00000261517 USP17L1Q7RTZ2 530 aa4.73□□□□□ -1.65
VPS13C-202ENST00000261517 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.73□□□□□ -1.65
VPS13C-202ENST00000261517 PNPLA7Q6ZV29 1317 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms