RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 CCDC62Q6P9F0 684 aa9.57□□□□□ -0.88
PTCD3-201ENST00000254630 DPP9Q86TI2 863 aa9.57□□□□□ -0.88
PTCD3-201ENST00000254630 ANKRD36BP1Q96IX9 119 aa9.57□□□□□ -0.88
PTCD3-201ENST00000254630 DBNDD1Q9H9R9 158 aa9.57□□□□□ -0.88
PTCD3-201ENST00000254630 MAGEF1Q9HAY2 307 aa9.57□□□□□ -0.88
PTCD3-201ENST00000254630 COL4A3BPQ9Y5P4 624 aa9.57□□□□□ -0.88
PTCD3-201ENST00000254630 TRPM1Q7Z4N2 1603 aa9.57□□□□□ -0.88
PTCD3-201ENST00000254630 DLATP10515 647 aaKnown RBP9.56□□□□□ -0.88
PTCD3-201ENST00000254630 SARNPP82979 210 aaKnown RBP9.56□□□□□ -0.88
PTCD3-201ENST00000254630 MAP7Q14244 749 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 LRCH2Q5VUJ6 765 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 KRBA2Q6ZNG9 492 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 PALM2Q8IXS6 379 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 XPO4Q9C0E2 1151 aaKnown RBP9.56□□□□□ -0.88
PTCD3-201ENST00000254630 SUGCTQ9HAC7 445 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 IGSF1Q8N6C5 1336 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 RIOK3O14730 519 aaKnown RBP9.56□□□□□ -0.88
PTCD3-201ENST00000254630 TMEM191BP0C7N4 346 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 ABCB4P21439 1286 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 CCNA1P78396 465 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 ZMYM1Q5SVZ6 1142 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 RUFY4Q6ZNE9 571 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 SLC39A2Q9NP94 309 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 PDIA3P30101 505 aaKnown RBP9.56□□□□□ -0.88
PTCD3-201ENST00000254630 KCTD2Q14681 263 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 CLIC6Q96NY7 704 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 RPS6KC1Q96S38 1066 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 GDF11O95390 407 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 GTF2A1P52655 376 aaPredicted RBP9.56□□□□□ -0.88
PTCD3-201ENST00000254630 SYDE2Q5VT97 1194 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 RINT1Q6NUQ1 792 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 P3H4Q92791 437 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 APOL6Q9BWW8 343 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 AP5M1Q9H0R1 490 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 BUB1O43683 1085 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 MAN1A1P33908 653 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 POLR2FP61218 127 aaKnown RBP9.56□□□□□ -0.88
PTCD3-201ENST00000254630 UBXN2AP68543 259 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 BSPRYQ5W0U4 402 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 CEP57Q86XR8 500 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 HAUS1Q96CS2 278 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 EPSTI1Q96J88 318 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 CARMIL3Q8ND23 1372 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 HEG1Q9ULI3 1381 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 FOSP01100 380 aaPredicted RBP9.56□□□□□ -0.88
PTCD3-201ENST00000254630 ADD2P35612 726 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 TRIML1Q8N9V2 468 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 POMGNT1Q8WZA1 660 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 KIAA1468Q9P260 1216 aa9.56□□□□□ -0.88
PTCD3-201ENST00000254630 ELF2Q15723 593 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 PDZD4Q76G19 769 aaPredicted RBP9.55□□□□□ -0.88
PTCD3-201ENST00000254630 RETREG2Q8NC44 543 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 PI4K2BQ8TCG2 481 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 MIS12Q9H081 205 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 SEC31BQ9NQW1 1179 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 AFG3L2Q9Y4W6 797 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 BRD1O95696 1058 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 CMA1P23946 247 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 PRPSAP1Q14558 356 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 SPICE1Q8N0Z3 855 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 ZNF710Q8N1W2 664 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 PPFIBP2Q8ND30 876 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 RTEL1Q9NZ71 1219 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 PCDHB4Q9Y5E5 795 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 PCDHA1Q9Y5I3 950 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 KRT15P19012 456 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 MFAP3P55082 362 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 RSPH3Q86UC2 560 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 ZBTB1Q9Y2K1 713 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 ABCC12Q96J65 1359 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 KCNK3O14649 394 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 GAP43P17677 238 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 ADAM9Q13443 819 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 CCDC93Q567U6 631 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 TRIM58Q8NG06 486 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 CCDC17Q96LX7 622 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 AMNQ9BXJ7 453 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 MBD5Q9P267 1494 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 U2AF2P26368 475 aaKnown RBP eCLIP9.55□□□□□ -0.883e-8■■□□□ 14.2
PTCD3-201ENST00000254630 NDUFA8P51970 172 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 STAT2P52630 851 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 NEDD9Q14511 834 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 UNC5CLQ8IV45 518 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 CCDC13Q8IYE1 715 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 PRPF31Q8WWY3 499 aaKnown RBP9.55□□□□□ -0.88
PTCD3-201ENST00000254630 ZNF277Q9NRM2 450 aaPredicted RBP9.55□□□□□ -0.88
PTCD3-201ENST00000254630 ARMCX3Q9UH62 379 aaPredicted RBP9.55□□□□□ -0.88
PTCD3-201ENST00000254630 LRFN2Q9ULH4 789 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 KIAA1024Q9UPX6 916 aa9.55□□□□□ -0.88
PTCD3-201ENST00000254630 PRAMEF22A3QJZ6 481 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 hCG_1984214I3L0E3 225 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 ADD1P35611 737 aaKnown RBP9.54□□□□□ -0.88
PTCD3-201ENST00000254630 WHAMMP3Q1A5X7 153 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 SUPT20HL1Q3ZLR7 823 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 EP400NLQ6ZTU2 488 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 ARHGEF25Q86VW2 580 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 METTL23Q86XA0 190 aa9.54□□□□□ -0.88
PTCD3-201ENST00000254630 RPUSD2Q8IZ73 545 aaKnown RBP9.54□□□□□ -0.88
PTCD3-201ENST00000254630 ZNF713Q8N859 430 aaPredicted RBP9.54□□□□□ -0.88
PTCD3-201ENST00000254630 ACCSQ96QU6 501 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms