RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 CTAGE8P0CG41 777 aa23.89■■□□□ 1.42
TRIM28-201ENST00000253024 TM4SF1P30408 202 aa23.89■■□□□ 1.42
TRIM28-201ENST00000253024 CTAGE6Q86UF2 777 aa23.89■■□□□ 1.42
TRIM28-201ENST00000253024 CTAGE4Q8IX94 777 aa23.89■■□□□ 1.42
TRIM28-201ENST00000253024 AMOTL1Q8IY63 956 aa23.89■■□□□ 1.42
TRIM28-201ENST00000253024 POLD4Q9HCU8 107 aa23.89■■□□□ 1.42
TRIM28-201ENST00000253024 TNNT3P45378 269 aaPredicted RBP23.89■■□□□ 1.41
TRIM28-201ENST00000253024 TCP11L1Q9NUJ3 509 aa23.89■■□□□ 1.41
TRIM28-201ENST00000253024 KLRC4O43908 158 aa23.88■■□□□ 1.41
TRIM28-201ENST00000253024 PPARDQ03181 441 aa23.88■■□□□ 1.41
TRIM28-201ENST00000253024 ANKRD2Q9GZV1 360 aa23.88■■□□□ 1.41
TRIM28-201ENST00000253024 EXOC1Q9NV70 894 aa23.88■■□□□ 1.41
TRIM28-201ENST00000253024 RMND1Q9NWS8 449 aa23.88■■□□□ 1.41
TRIM28-201ENST00000253024 NARFQ9UHQ1 456 aa23.88■■□□□ 1.41
TRIM28-201ENST00000253024 WDR59Q6PJI9 974 aa23.88■■□□□ 1.41
TRIM28-201ENST00000253024 OR8K1Q8NGG5 319 aa23.88■■□□□ 1.41
TRIM28-201ENST00000253024 CNOT6LQ96LI5 555 aaKnown RBP23.88■■□□□ 1.41
TRIM28-201ENST00000253024 NAA15Q9BXJ9 866 aaKnown RBP23.88■■□□□ 1.41
TRIM28-201ENST00000253024 TTF2Q9UNY4 1162 aaKnown RBP23.88■■□□□ 1.41
TRIM28-201ENST00000253024 CXCR5P32302 372 aa23.88■■□□□ 1.41
TRIM28-201ENST00000253024 SLC16A2P36021 539 aa23.88■■□□□ 1.41
TRIM28-201ENST00000253024 CDK8P49336 464 aa23.88■■□□□ 1.41
TRIM28-201ENST00000253024 UBE2SQ16763 222 aa23.88■■□□□ 1.41
TRIM28-201ENST00000253024 MYO6Q9UM54 1294 aa23.88■■□□□ 1.41
TRIM28-201ENST00000253024 NHSL1Q5SYE7 1610 aa23.87■■□□□ 1.41
TRIM28-201ENST00000253024 TDP2O95551 362 aa23.87■■□□□ 1.41
TRIM28-201ENST00000253024 HERVK_113P62684 666 aa23.87■■□□□ 1.41
TRIM28-201ENST00000253024 GRM4Q14833 912 aa23.87■■□□□ 1.41
TRIM28-201ENST00000253024 MMS19Q96T76 1030 aa23.87■■□□□ 1.41
TRIM28-201ENST00000253024 NOC4LQ9BVI4 516 aaKnown RBP23.87■■□□□ 1.41
TRIM28-201ENST00000253024 C6orf229H3BNL8 230 aa23.87■■□□□ 1.41
TRIM28-201ENST00000253024 CAGE1Q8TC20 777 aa23.87■■□□□ 1.41
TRIM28-201ENST00000253024 NUDT12Q9BQG2 462 aa23.87■■□□□ 1.41
TRIM28-201ENST00000253024 JADE2Q9NQC1 790 aa23.87■■□□□ 1.41
TRIM28-201ENST00000253024 BARHL2Q9NY43 387 aa23.87■■□□□ 1.41
TRIM28-201ENST00000253024 TULP1O00294 542 aaPredicted RBP23.86■■□□□ 1.41
TRIM28-201ENST00000253024 TRAPPC10P48553 1259 aa23.86■■□□□ 1.41
TRIM28-201ENST00000253024 TNNI2P48788 182 aa23.86■■□□□ 1.41
TRIM28-201ENST00000253024 RIN2Q8WYP3 895 aaPredicted RBP23.86■■□□□ 1.41
TRIM28-201ENST00000253024 DUSP9Q99956 384 aaKnown RBP23.86■■□□□ 1.41
TRIM28-201ENST00000253024 ARAP2Q8WZ64 1704 aa23.86■■□□□ 1.41
TRIM28-201ENST00000253024 EPHB6O15197 1021 aa23.86■■□□□ 1.41
TRIM28-201ENST00000253024 GPSM2P81274 684 aa23.86■■□□□ 1.41
TRIM28-201ENST00000253024 STIM1Q13586 685 aa23.86■■□□□ 1.41
TRIM28-201ENST00000253024 SOGA3Q5TF21 947 aa23.86■■□□□ 1.41
TRIM28-201ENST00000253024 NYXQ9GZU5 481 aa23.86■■□□□ 1.41
TRIM28-201ENST00000253024 EHD2Q9NZN4 543 aa23.86■■□□□ 1.41
TRIM28-201ENST00000253024 ZKSCAN7Q9P0L1 754 aaPredicted RBP23.86■■□□□ 1.41
TRIM28-201ENST00000253024 FAM196BA6NMK8 535 aa23.85■■□□□ 1.41
TRIM28-201ENST00000253024 BAG3O95817 575 aa23.85■■□□□ 1.41
TRIM28-201ENST00000253024 APBA1Q02410 837 aa23.85■■□□□ 1.41
TRIM28-201ENST00000253024 SPAG1Q07617 926 aa23.85■■□□□ 1.41
TRIM28-201ENST00000253024 MFSD14BQ5SR56 506 aa23.85■■□□□ 1.41
TRIM28-201ENST00000253024 FAM196AQ6ZSG2 479 aa23.85■■□□□ 1.41
TRIM28-201ENST00000253024 DGKHQ86XP1 1220 aa23.85■■□□□ 1.41
TRIM28-201ENST00000253024 MMRN2Q9H8L6 949 aa23.85■■□□□ 1.41
TRIM28-201ENST00000253024 PLCH1Q4KWH8 1693 aa23.85■■□□□ 1.41
TRIM28-201ENST00000253024 H7C1D1 291 aa23.85■■□□□ 1.41
TRIM28-201ENST00000253024 CEP112Q8N8E3 955 aa23.85■■□□□ 1.41
TRIM28-201ENST00000253024 CDCA7Q9BWT1 371 aaPredicted RBP23.85■■□□□ 1.41
TRIM28-201ENST00000253024 TANGO6Q9C0B7 1094 aa23.85■■□□□ 1.41
TRIM28-201ENST00000253024 LGALS16A8MUM7 142 aa23.85■■□□□ 1.41
TRIM28-201ENST00000253024 OR52Z1P0C646 297 aa23.85■■□□□ 1.41
TRIM28-201ENST00000253024 CYP2C19P33261 490 aa23.85■■□□□ 1.41
TRIM28-201ENST00000253024 PTPROQ16827 1216 aa23.85■■□□□ 1.41
TRIM28-201ENST00000253024 TRIM34Q9BYJ4 488 aa23.85■■□□□ 1.41
TRIM28-201ENST00000253024 RABEP2Q9H5N1 569 aa23.85■■□□□ 1.41
TRIM28-201ENST00000253024 SEC63Q9UGP8 760 aaKnown RBP23.85■■□□□ 1.41
TRIM28-201ENST00000253024 FAN1Q9Y2M0 1017 aa23.85■■□□□ 1.41
TRIM28-201ENST00000253024 SBK1Q52WX2 424 aa23.84■■□□□ 1.41
TRIM28-201ENST00000253024 ARL6IP4Q66PJ3 421 aaKnown RBP23.84■■□□□ 1.41
TRIM28-201ENST00000253024 TTI2Q6NXR4 508 aa23.84■■□□□ 1.41
TRIM28-201ENST00000253024 TRIM9Q9C026 710 aa23.84■■□□□ 1.41
TRIM28-201ENST00000253024 ZHX3Q9H4I2 956 aa23.84■■□□□ 1.41
TRIM28-201ENST00000253024 MKRN1Q9UHC7 482 aaKnown RBP23.84■■□□□ 1.41
TRIM28-201ENST00000253024 PHLPP1O60346 1717 aa23.84■■□□□ 1.41
TRIM28-201ENST00000253024 SLC37A4O43826 429 aa23.84■■□□□ 1.41
TRIM28-201ENST00000253024 CNBD1Q8NA66 436 aa23.84■■□□□ 1.41
TRIM28-201ENST00000253024 ANKRD65E5RJM6 399 aa23.83■■□□□ 1.41
TRIM28-201ENST00000253024 ARID5AQ03989 594 aa23.83■■□□□ 1.41
TRIM28-201ENST00000253024 NONOQ15233 471 aaKnown RBP eCLIP23.83■■□□□ 1.41
TRIM28-201ENST00000253024 BEND6Q5SZJ8 279 aaPredicted RBP23.83■■□□□ 1.41
TRIM28-201ENST00000253024 SPTY2D1Q68D10 685 aaPredicted RBP23.83■■□□□ 1.41
TRIM28-201ENST00000253024 JAKMIP2Q96AA8 810 aa23.83■■□□□ 1.41
TRIM28-201ENST00000253024 LRRC10BA6NIK2 292 aa23.83■■□□□ 1.41
TRIM28-201ENST00000253024 MPHOSPH10O00566 681 aaKnown RBP23.83■■□□□ 1.41
TRIM28-201ENST00000253024 MARCH6O60337 910 aa23.83■■□□□ 1.41
TRIM28-201ENST00000253024 TAL1P17542 331 aaPredicted RBP23.83■■□□□ 1.41
TRIM28-201ENST00000253024 SCNN1DP51172 638 aa23.83■■□□□ 1.41
TRIM28-201ENST00000253024 ADAM21Q9UKJ8 722 aa23.83■■□□□ 1.41
TRIM28-201ENST00000253024 RASSF10A6NK89 507 aa23.82■■□□□ 1.4
TRIM28-201ENST00000253024 CCDC96Q2M329 555 aa23.82■■□□□ 1.4
TRIM28-201ENST00000253024 SHROOM1Q2M3G4 852 aaPredicted RBP23.82■■□□□ 1.4
TRIM28-201ENST00000253024 TTBK2Q6IQ55 1244 aa23.82■■□□□ 1.4
TRIM28-201ENST00000253024 TMC4Q7Z404 712 aa23.82■■□□□ 1.4
TRIM28-201ENST00000253024 C2CD5Q86YS7 1000 aa23.82■■□□□ 1.4
TRIM28-201ENST00000253024 CCDC148Q8NFR7 591 aa23.82■■□□□ 1.4
TRIM28-201ENST00000253024 RPGRQ92834 1020 aaKnown RBP23.82■■□□□ 1.4
TRIM28-201ENST00000253024 CRACR2AQ9BSW2 395 aa23.82■■□□□ 1.4
TRIM28-201ENST00000253024 NHEJ1Q9H9Q4 299 aaPredicted RBP23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms