RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 CCDC82Q8N4S0 544 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 KDM5AP29375 1690 aaKnown RBP5.1□□□□□ -1.59
SCN1A-220ENST00000641603 ATP5BP06576 529 aaKnown RBP5.1□□□□□ -1.59
SCN1A-220ENST00000641603 PFKFB1P16118 471 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 KDM7AQ6ZMT4 941 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 RPGRQ92834 1020 aaKnown RBP5.1□□□□□ -1.59
SCN1A-220ENST00000641603 MEIS3Q99687 375 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 ATP5JP18859 108 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 GUCY2DQ02846 1103 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 FAM133BQ5BKY9 247 aaKnown RBP5.1□□□□□ -1.59
SCN1A-220ENST00000641603 ITFG2Q969R8 447 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 TTC25Q96NG3 672 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 THAP9Q9H5L6 903 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 METTL14Q9HCE5 456 aaKnown RBP5.1□□□□□ -1.59
SCN1A-220ENST00000641603 DIABLOQ9NR28 239 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 MDM2Q00987 491 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-220ENST00000641603 RAPGEF1Q13905 1077 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 EIF1ADQ8N9N8 165 aaKnown RBP5.1□□□□□ -1.59
SCN1A-220ENST00000641603 MTA3Q9BTC8 594 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 IMPG2Q9BZV3 1241 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 CTNND2Q9UQB3 1225 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 FRMD3A2A2Y4 597 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 MFAP3LO75121 409 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 PREPLQ4J6C6 727 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-220ENST00000641603 KRT80Q6KB66 452 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 C16orf87Q6PH81 154 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 FRA10AC1Q70Z53 315 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 CCDC105Q8IYK2 499 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 MTRQ99707 1265 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 ZHX3Q9H4I2 956 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 TACC3Q9Y6A5 838 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 PTCH1Q13635 1447 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 SPOPO43791 374 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 ACTN3Q08043 901 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-220ENST00000641603 SCYL3Q8IZE3 742 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 KDM4CQ9H3R0 1056 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 ARHGAP26Q9UNA1 814 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 ZNF330Q9Y3S2 320 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-220ENST00000641603 USP19O94966 1318 aa5.1□□□□□ -1.59
SCN1A-220ENST00000641603 LDHCP07864 332 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 RCAN1P53805 252 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 ZNF530Q6P9A1 599 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-220ENST00000641603 POTEAQ6S8J7 498 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 GID8Q9NWU2 228 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 ANGEL1Q9UNK9 670 aaKnown RBP5.09□□□□□ -1.59
SCN1A-220ENST00000641603 GGPS1O95749 300 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 EPB41P11171 864 aaKnown RBP5.09□□□□□ -1.59
SCN1A-220ENST00000641603 SLC17A8Q8NDX2 589 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 CPSF1Q10570 1443 aaKnown RBP5.09□□□□□ -1.59
SCN1A-220ENST00000641603 RIMS2Q9UQ26 1411 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 STK10O94804 968 aaKnown RBP5.09□□□□□ -1.59
SCN1A-220ENST00000641603 KRT3P12035 628 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 AFMP43652 599 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 DNAL1Q4LDG9 190 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 KRT25Q7Z3Z0 450 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 TRIML2Q8N7C3 387 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 CASP10Q92851 521 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 TEX13AQ9BXU3 409 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-220ENST00000641603 ABCF3Q9NUQ8 709 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 CCDC61Q9Y6R9 512 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 SERPINI2O75830 405 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 TTC4O95801 387 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 FMO2Q99518 471 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 RIOK1Q9BRS2 568 aaKnown RBP5.09□□□□□ -1.59
SCN1A-220ENST00000641603 CNPY3Q9BT09 278 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 BOLA2Q9H3K6 86 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 TPCN1Q9ULQ1 816 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 CORO1CQ9ULV4 474 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-220ENST00000641603 NDUFA10O95299 355 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 MYCNP04198 464 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-220ENST00000641603 RPSAP08865 295 aaKnown RBP5.09□□□□□ -1.59
SCN1A-220ENST00000641603 ZKSCAN3Q9BRR0 538 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 WDR19Q8NEZ3 1342 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 KDM5BQ9UGL1 1544 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 ZNF76P36508 570 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 DHX34Q14147 1143 aaKnown RBP5.09□□□□□ -1.59
SCN1A-220ENST00000641603 ATG16L1Q676U5 607 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 ZC3H18Q86VM9 953 aaKnown RBP5.09□□□□□ -1.59
SCN1A-220ENST00000641603 ABTB1Q969K4 478 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-220ENST00000641603 CFAP36Q96G28 342 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 TAF1DQ9H5J8 278 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-220ENST00000641603 C14orf93Q9H972 538 aaKnown RBP5.09□□□□□ -1.59
SCN1A-220ENST00000641603 SMG5Q9UPR3 1016 aaKnown RBP5.09□□□□□ -1.59
SCN1A-220ENST00000641603 ITIH6Q6UXX5 1313 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 S100A1P23297 94 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 MRPL12P52815 198 aaKnown RBP5.09□□□□□ -1.59
SCN1A-220ENST00000641603 SNX1Q13596 522 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 SYTL4Q96C24 671 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-220ENST00000641603 NT5C3AQ9H0P0 336 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 BTBD11A6QL63 1104 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 GSTO1P78417 241 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 CDC37Q16543 378 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-220ENST00000641603 SPDYCQ5MJ68 293 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 ZNF579Q8NAF0 562 aaKnown RBP5.09□□□□□ -1.59
SCN1A-220ENST00000641603 TOPBP1Q92547 1522 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 CCDC138Q96M89 665 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 AK8Q96MA6 479 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 DKK3Q9UBP4 350 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 FRMD4BQ9Y2L6 1034 aa5.09□□□□□ -1.59
SCN1A-220ENST00000641603 KDM3AQ9Y4C1 1321 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms