RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 ZBBXA8MT70 800 aa19.71■□□□□ 0.75
CLN3-264ENST00000637985 CYP2D6P10635 497 aa19.71■□□□□ 0.75
CLN3-264ENST00000637985 POLA2Q14181 598 aa19.71■□□□□ 0.75
CLN3-264ENST00000637985 TEX13BQ9BXU2 312 aa19.71■□□□□ 0.75
CLN3-264ENST00000637985 RIPK3Q9Y572 518 aa19.71■□□□□ 0.75
CLN3-264ENST00000637985 GRIN2DO15399 1336 aa19.71■□□□□ 0.75
CLN3-264ENST00000637985 MYH8P13535 1937 aa19.7■□□□□ 0.74
CLN3-264ENST00000637985 CABYRO75952 493 aa19.7■□□□□ 0.74
CLN3-264ENST00000637985 ATP8B2P98198 1209 aa19.7■□□□□ 0.74
CLN3-264ENST00000637985 BEX3Q00994 111 aa19.7■□□□□ 0.74
CLN3-264ENST00000637985 ITGA7Q13683 1181 aa19.7■□□□□ 0.74
CLN3-264ENST00000637985 CXCL17Q6UXB2 119 aa19.7■□□□□ 0.74
CLN3-264ENST00000637985 ITPRIPQ8IWB1 547 aa19.7■□□□□ 0.74
CLN3-264ENST00000637985 SSH3Q8TE77 659 aa19.7■□□□□ 0.74
CLN3-264ENST00000637985 DYNLL2Q96FJ2 89 aa19.7■□□□□ 0.74
CLN3-264ENST00000637985 FGD4Q96M96 766 aa19.7■□□□□ 0.74
CLN3-264ENST00000637985 AGBL1Q96MI9 1066 aa19.7■□□□□ 0.74
CLN3-264ENST00000637985 SEZ6LQ9BYH1 1024 aa19.7■□□□□ 0.74
CLN3-264ENST00000637985 CRNKL1Q9BZJ0 848 aaKnown RBP19.7■□□□□ 0.74
CLN3-264ENST00000637985 KATNBL1Q9H079 304 aa19.7■□□□□ 0.74
CLN3-264ENST00000637985 TRPV6Q9H1D0 765 aa19.7■□□□□ 0.74
CLN3-264ENST00000637985 DCP1AQ9NPI6 582 aaPredicted RBP19.7■□□□□ 0.74
CLN3-264ENST00000637985 B4GALT4O60513 344 aa19.69■□□□□ 0.74
CLN3-264ENST00000637985 EEF2P13639 858 aaKnown RBP19.69■□□□□ 0.74
CLN3-264ENST00000637985 OS9Q13438 667 aaPredicted RBP19.69■□□□□ 0.74
CLN3-264ENST00000637985 TTLL4Q14679 1199 aa19.69■□□□□ 0.74
CLN3-264ENST00000637985 SNRNP48Q6IEG0 339 aaKnown RBP19.69■□□□□ 0.74
CLN3-264ENST00000637985 CCDC17Q96LX7 622 aa19.69■□□□□ 0.74
CLN3-264ENST00000637985 CCDC8Q9H0W5 538 aaPredicted RBP19.69■□□□□ 0.74
CLN3-264ENST00000637985 PFKMP08237 780 aa19.68■□□□□ 0.74
CLN3-264ENST00000637985 RLBP1P12271 317 aa19.68■□□□□ 0.74
CLN3-264ENST00000637985 TAP1Q03518 808 aa19.68■□□□□ 0.74
CLN3-264ENST00000637985 FAM83BQ5T0W9 1011 aa19.68■□□□□ 0.74
CLN3-264ENST00000637985 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.68■□□□□ 0.74
CLN3-264ENST00000637985 ARMCX2Q7L311 632 aa19.68■□□□□ 0.74
CLN3-264ENST00000637985 SDR42E1Q8WUS8 393 aa19.68■□□□□ 0.74
CLN3-264ENST00000637985 ARNTL2Q8WYA1 636 aa19.68■□□□□ 0.74
CLN3-264ENST00000637985 EAF2Q96CJ1 260 aaPredicted RBP19.68■□□□□ 0.74
CLN3-264ENST00000637985 SCLYQ96I15 445 aa19.68■□□□□ 0.74
CLN3-264ENST00000637985 ASTN1O14525 1302 aa19.68■□□□□ 0.74
CLN3-264ENST00000637985 WDFY4Q6ZS81 3184 aa19.68■□□□□ 0.74
CLN3-264ENST00000637985 ARHGEF15O94989 841 aa19.67■□□□□ 0.74
CLN3-264ENST00000637985 KANSL2Q9H9L4 492 aa19.67■□□□□ 0.74
CLN3-264ENST00000637985 GOPCQ9HD26 462 aa19.67■□□□□ 0.74
CLN3-264ENST00000637985 ATP2A1O14983 1001 aa19.66■□□□□ 0.74
CLN3-264ENST00000637985 LPXNO60711 386 aa19.66■□□□□ 0.74
CLN3-264ENST00000637985 SURF6O75683 361 aaKnown RBP19.66■□□□□ 0.74
CLN3-264ENST00000637985 MS4A1P11836 297 aa19.66■□□□□ 0.74
CLN3-264ENST00000637985 NHLH1Q02575 133 aa19.66■□□□□ 0.74
CLN3-264ENST00000637985 GRB10Q13322 594 aa19.66■□□□□ 0.74
CLN3-264ENST00000637985 SLF1Q9BQI6 1058 aa19.66■□□□□ 0.74
CLN3-264ENST00000637985 GNEQ9Y223 722 aaKnown RBP19.66■□□□□ 0.74
CLN3-264ENST00000637985 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.65■□□□□ 0.74
CLN3-264ENST00000637985 TNFAIP2Q03169 654 aa19.65■□□□□ 0.74
CLN3-264ENST00000637985 FSCN1Q16658 493 aaKnown RBP19.65■□□□□ 0.74
CLN3-264ENST00000637985 CCDC144CPQ8IYA2 1237 aa19.65■□□□□ 0.74
CLN3-264ENST00000637985 PHOSPHO2Q8TCD6 241 aa19.65■□□□□ 0.74
CLN3-264ENST00000637985 SLC9A7Q96T83 725 aa19.65■□□□□ 0.74
CLN3-264ENST00000637985 C1orf115Q9H7X2 142 aa19.65■□□□□ 0.74
CLN3-264ENST00000637985 PDE6AP16499 860 aa19.64■□□□□ 0.73
CLN3-264ENST00000637985 CDK8P49336 464 aa19.64■□□□□ 0.73
CLN3-264ENST00000637985 SLC9C2Q5TAH2 1124 aa19.64■□□□□ 0.73
CLN3-264ENST00000637985 GJD3Q8N144 294 aa19.64■□□□□ 0.73
CLN3-264ENST00000637985 NOP58Q9Y2X3 529 aaKnown RBP19.64■□□□□ 0.73
CLN3-264ENST00000637985 NOL8Q76FK4 1167 aaKnown RBP19.63■□□□□ 0.73
CLN3-264ENST00000637985 TLK2Q86UE8 772 aa19.63■□□□□ 0.73
CLN3-264ENST00000637985 FAM178BQ8IXR5 827 aa19.63■□□□□ 0.73
CLN3-264ENST00000637985 ANKRD35Q8N283 1001 aa19.63■□□□□ 0.73
CLN3-264ENST00000637985 LCORLQ8N3X6 602 aa19.63■□□□□ 0.73
CLN3-264ENST00000637985 ALDH8A1Q9H2A2 487 aaPredicted RBP19.63■□□□□ 0.73
CLN3-264ENST00000637985 ZNF532Q9HCE3 1301 aa19.62■□□□□ 0.73
CLN3-264ENST00000637985 RAD21O60216 631 aa19.62■□□□□ 0.73
CLN3-264ENST00000637985 PSMC6P62333 389 aa19.62■□□□□ 0.73
CLN3-264ENST00000637985 DEFB128Q7Z7B8 93 aa19.62■□□□□ 0.73
CLN3-264ENST00000637985 HERC6Q8IVU3 1022 aa19.62■□□□□ 0.73
CLN3-264ENST00000637985 CPXCR1Q8N123 301 aa19.62■□□□□ 0.73
CLN3-264ENST00000637985 PRPF38AQ8NAV1 312 aaKnown RBP19.62■□□□□ 0.73
CLN3-264ENST00000637985 NUP88Q99567 741 aaPredicted RBP19.62■□□□□ 0.73
CLN3-264ENST00000637985 KCNH6Q9H252 994 aa19.62■□□□□ 0.73
CLN3-264ENST00000637985 LMCD1Q9NZU5 365 aa19.62■□□□□ 0.73
CLN3-264ENST00000637985 SCN5AQ14524 2016 aa19.62■□□□□ 0.73
CLN3-264ENST00000637985 TCRBV5S4A2TA0A5A2 114 aa19.61■□□□□ 0.73
CLN3-264ENST00000637985 ZEB2O60315 1214 aa19.61■□□□□ 0.73
CLN3-264ENST00000637985 ACTN1P12814 892 aa19.61■□□□□ 0.73
CLN3-264ENST00000637985 ALADP13716 330 aa19.61■□□□□ 0.73
CLN3-264ENST00000637985 SLC4A3P48751 1232 aa19.61■□□□□ 0.73
CLN3-264ENST00000637985 C12orf60Q5U649 245 aa19.61■□□□□ 0.73
CLN3-264ENST00000637985 C16orf86Q6ZW13 317 aa19.61■□□□□ 0.73
CLN3-264ENST00000637985 PANK1Q8TE04 598 aa19.61■□□□□ 0.73
CLN3-264ENST00000637985 FBXL18Q96ME1 805 aa19.61■□□□□ 0.73
CLN3-264ENST00000637985 UIMC1Q96RL1 719 aa19.61■□□□□ 0.73
CLN3-264ENST00000637985 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.61■□□□□ 0.73
CLN3-264ENST00000637985 FBXO40Q9UH90 709 aa19.61■□□□□ 0.73
CLN3-264ENST00000637985 BAZ2AQ9UIF9 1905 aaKnown RBP19.61■□□□□ 0.73
CLN3-264ENST00000637985 CYP2D7A0A087X1C5 515 aa19.6■□□□□ 0.73
CLN3-264ENST00000637985 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.6■□□□□ 0.73
CLN3-264ENST00000637985 KIF28PB7ZC32 967 aa19.6■□□□□ 0.73
CLN3-264ENST00000637985 CYP2C9P11712 490 aa19.6■□□□□ 0.73
CLN3-264ENST00000637985 PTGS1P23219 599 aa19.6■□□□□ 0.73
CLN3-264ENST00000637985 CNTN2Q02246 1040 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms