RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 PRC1O43663 620 aa21.34■■□□□ 1.01
CLN3-259ENST00000637551 IGHA2P01877 340 aa21.34■■□□□ 1.01
CLN3-259ENST00000637551 CALM1P0DP23 149 aa21.34■■□□□ 1.01
CLN3-259ENST00000637551 CALM2P0DP24 149 aa21.34■■□□□ 1.01
CLN3-259ENST00000637551 CALM3P0DP25 149 aa21.34■■□□□ 1.01
CLN3-259ENST00000637551 SMARCA1P28370 1054 aa21.34■■□□□ 1.01
CLN3-259ENST00000637551 TROAPQ12815 778 aa21.34■■□□□ 1.01
CLN3-259ENST00000637551 TRAF1Q13077 416 aa21.34■■□□□ 1.01
CLN3-259ENST00000637551 KCTD2Q14681 263 aa21.34■■□□□ 1.01
CLN3-259ENST00000637551 DHX32Q7L7V1 743 aaKnown RBP21.34■■□□□ 1.01
CLN3-259ENST00000637551 CATIPQ7Z7H3 387 aa21.34■■□□□ 1.01
CLN3-259ENST00000637551 LY9Q9HBG7 655 aa21.34■■□□□ 1.01
CLN3-259ENST00000637551 SH2B2O14492 632 aaPredicted RBP21.33■■□□□ 1.01
CLN3-259ENST00000637551 PSMA5P28066 241 aa21.33■■□□□ 1.01
CLN3-259ENST00000637551 ADORA2AP29274 412 aa21.33■■□□□ 1.01
CLN3-259ENST00000637551 MAP3K21Q5TCX8 1036 aa21.33■■□□□ 1.01
CLN3-259ENST00000637551 NRBP1Q9UHY1 535 aa21.33■■□□□ 1.01
CLN3-259ENST00000637551 ISY1Q9ULR0 285 aaKnown RBP21.33■■□□□ 1.01
CLN3-259ENST00000637551 PFASO15067 1338 aa21.32■■□□□ 1
CLN3-259ENST00000637551 LOC102724159A0A0B4J2E5 919 aa21.32■■□□□ 1
CLN3-259ENST00000637551 PALM3A6NDB9 673 aaPredicted RBP21.32■■□□□ 1
CLN3-259ENST00000637551 PEX10O60683 326 aa21.32■■□□□ 1
CLN3-259ENST00000637551 KIF5BP33176 963 aa21.32■■□□□ 1
CLN3-259ENST00000637551 GRM4Q14833 912 aa21.32■■□□□ 1
CLN3-259ENST00000637551 PWP2Q15269 919 aaKnown RBP21.32■■□□□ 1
CLN3-259ENST00000637551 WDR78Q5VTH9 848 aa21.32■■□□□ 1
CLN3-259ENST00000637551 ZNF467Q7Z7K2 595 aaPredicted RBP21.32■■□□□ 1
CLN3-259ENST00000637551 LZTS2Q9BRK4 669 aa21.32■■□□□ 1
CLN3-259ENST00000637551 USP26Q9BXU7 913 aa21.32■■□□□ 1
CLN3-259ENST00000637551 ACAD9Q9H845 621 aa21.32■■□□□ 1
CLN3-259ENST00000637551 ANAPC15P60006 121 aa21.31■■□□□ 1
CLN3-259ENST00000637551 EXOSC10Q01780 885 aaKnown RBP21.31■■□□□ 1
CLN3-259ENST00000637551 RASEFQ8IZ41 740 aa21.31■■□□□ 1
CLN3-259ENST00000637551 MMP19Q99542 508 aa21.31■■□□□ 1
CLN3-259ENST00000637551 TMEM106CQ9BVX2 250 aa21.31■■□□□ 1
CLN3-259ENST00000637551 DNAJC25-GNG10A0A024R161 153 aa21.3■■□□□ 1
CLN3-259ENST00000637551 DLL1O00548 723 aa21.3■■□□□ 1
CLN3-259ENST00000637551 INHAP05111 366 aa21.3■■□□□ 1
CLN3-259ENST00000637551 GNAQP50148 359 aa21.3■■□□□ 1
CLN3-259ENST00000637551 PPP2R5BQ15173 497 aa21.3■■□□□ 1
CLN3-259ENST00000637551 SAMD1Q6SPF0 538 aaPredicted RBP21.3■■□□□ 1
CLN3-259ENST00000637551 DPP9Q86TI2 863 aa21.3■■□□□ 1
CLN3-259ENST00000637551 CPXCR1Q8N123 301 aa21.3■■□□□ 1
CLN3-259ENST00000637551 TRIB2Q92519 343 aa21.3■■□□□ 1
CLN3-259ENST00000637551 MTMR8Q96EF0 704 aa21.3■■□□□ 1
CLN3-259ENST00000637551 IL17RAQ96F46 866 aa21.3■■□□□ 1
CLN3-259ENST00000637551 TM6SF1Q9BZW5 370 aa21.3■■□□□ 1
CLN3-259ENST00000637551 RAVER2Q9HCJ3 691 aaKnown RBP21.3■■□□□ 1
CLN3-259ENST00000637551 MAD2L2Q9UI95 211 aa21.3■■□□□ 1
CLN3-259ENST00000637551 FRMPD2Q68DX3 1309 aaPredicted RBP21.29■■□□□ 1
CLN3-259ENST00000637551 RPTORQ8N122 1335 aa21.29■■□□□ 1
CLN3-259ENST00000637551 GJB1P08034 283 aa21.29■■□□□ 1
CLN3-259ENST00000637551 CYP2B6P20813 491 aa21.29■■□□□ 1
CLN3-259ENST00000637551 MFSD14CQ5VZR4 134 aa21.29■■□□□ 1
CLN3-259ENST00000637551 TTBK2Q6IQ55 1244 aa21.29■■□□□ 1
CLN3-259ENST00000637551 RASGRP2Q7LDG7 609 aa21.29■■□□□ 1
CLN3-259ENST00000637551 ZNF654Q8IZM8 581 aa21.29■■□□□ 1
CLN3-259ENST00000637551 SAMD3Q8N6K7 520 aa21.29■■□□□ 1
CLN3-259ENST00000637551 RGS22Q8NE09 1264 aa21.29■■□□□ 1
CLN3-259ENST00000637551 SH3TC2Q8TF17 1288 aa21.29■■□□□ 1
CLN3-259ENST00000637551 AGXT2Q9BYV1 514 aa21.29■■□□□ 1
CLN3-259ENST00000637551 GPCPD1Q9NPB8 672 aa21.29■■□□□ 1
CLN3-259ENST00000637551 PAK6Q9NQU5 681 aaPredicted RBP21.29■■□□□ 1
CLN3-259ENST00000637551 CCPG1Q9ULG6 757 aa21.29■■□□□ 1
CLN3-259ENST00000637551 SNX14Q9Y5W7 946 aa21.29■■□□□ 1
CLN3-259ENST00000637551 CCDC69A6NI79 296 aa21.28■■□□□ 1
CLN3-259ENST00000637551 KLRF2D3W0D1 207 aa21.28■■□□□ 1
CLN3-259ENST00000637551 H0YGN5 161 aa21.28■■□□□ 1
CLN3-259ENST00000637551 CTCFLQ8NI51 663 aaPredicted RBP21.28■■□□□ 1
CLN3-259ENST00000637551 SPZ1Q9BXG8 430 aa21.28■■□□□ 1
CLN3-259ENST00000637551 RIOX1Q9H6W3 641 aa21.28■■□□□ 1
CLN3-259ENST00000637551 RNF146Q9NTX7 359 aa21.28■■□□□ 1
CLN3-259ENST00000637551 BIN2Q9UBW5 565 aaPredicted RBP21.28■■□□□ 1
CLN3-259ENST00000637551 MTMR7Q9Y216 660 aa21.28■■□□□ 1
CLN3-259ENST00000637551 RIPK3Q9Y572 518 aa21.28■■□□□ 1
CLN3-259ENST00000637551 RANBP2P49792 3224 aaKnown RBP21.28■■□□□ 1
CLN3-259ENST00000637551 MSCO60682 206 aa21.27■■□□□ 1
CLN3-259ENST00000637551 ELNP15502 786 aa21.27■■□□□ 1
CLN3-259ENST00000637551 SLC16A2P36021 539 aa21.27■■□□□ 1
CLN3-259ENST00000637551 ZNF792Q3KQV3 632 aa21.27■■□□□ 1
CLN3-259ENST00000637551 ADCK5Q3MIX3 580 aa21.27■■□□□ 1
CLN3-259ENST00000637551 BLOC1S2Q6QNY1 142 aa21.27■■□□□ 1
CLN3-259ENST00000637551 MAMDC4Q6UXC1 1216 aa21.27■■□□□ 1
CLN3-259ENST00000637551 TEX2Q8IWB9 1127 aa21.27■■□□□ 1
CLN3-259ENST00000637551 ADGRF4Q8IZF3 695 aa21.27■■□□□ 1
CLN3-259ENST00000637551 SLC12A7Q9Y666 1083 aa21.27■■□□□ 1
CLN3-259ENST00000637551 SYNGAP1Q96PV0 1343 aa21.27■□□□□ 0.99
CLN3-259ENST00000637551 A0A0C4DFX4 3053 aa21.26■□□□□ 0.99
CLN3-259ENST00000637551 NID2Q14112 1375 aa21.26■□□□□ 0.99
CLN3-259ENST00000637551 COBLO75128 1261 aa21.26■□□□□ 0.99
CLN3-259ENST00000637551 CCL5P13501 91 aa21.26■□□□□ 0.99
CLN3-259ENST00000637551 CDC37Q16543 378 aaPredicted RBP21.26■□□□□ 0.99
CLN3-259ENST00000637551 SYNE3Q6ZMZ3 975 aa21.26■□□□□ 0.99
CLN3-259ENST00000637551 CHST3Q7LGC8 479 aa21.26■□□□□ 0.99
CLN3-259ENST00000637551 DDX11Q96FC9 970 aa21.26■□□□□ 0.99
CLN3-259ENST00000637551 MAML3Q96JK9 1138 aa21.26■□□□□ 0.99
CLN3-259ENST00000637551 AGBL1Q96MI9 1066 aa21.26■□□□□ 0.99
CLN3-259ENST00000637551 TRERF1Q96PN7 1200 aa21.26■□□□□ 0.99
CLN3-259ENST00000637551 HMX1Q9NP08 348 aaPredicted RBP21.26■□□□□ 0.99
CLN3-259ENST00000637551 MAP3K20Q9NYL2 800 aaKnown RBP21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms