RNA–Protein interactions for RNA: ENST00000636306.1

CHD2-223, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 1,755 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-223	ENST00000636306	DENND2A	Q9ULE3	1009 aa		12.01	□□□□□ -0.49
CHD2-223	ENST00000636306	FAM184B	Q9ULE4	1060 aa		12.01	□□□□□ -0.49
CHD2-223	ENST00000636306	CORO1C	Q9ULV4	474 aa	Predicted RBP	12.01	□□□□□ -0.49
CHD2-223	ENST00000636306	KIAA1551	Q9HCM1	1747 aa		12.01	□□□□□ -0.49
CHD2-223	ENST00000636306	SALL1	Q9NSC2	1324 aa		12.01	□□□□□ -0.49
CHD2-223	ENST00000636306	KLF18	A0A0U1RQI7	1052 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306		A0A1B0GVL5	298 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	GNPAT	O15228	680 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	FOXP2	O15409	715 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	AP1G2	O75843	785 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	SETSIP	P0DME0	302 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	HAND2	P61296	217 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	MTA1	Q13330	715 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	ERFE	Q4G0M1	354 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	NAA35	Q5VZE5	725 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	KDM7A	Q6ZMT4	941 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	CCDC121	Q6ZUS5	278 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	MAGEB6	Q8N7X4	407 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	LINC00301	Q8NCQ3	95 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	C1orf131	Q8NDD1	294 aa	Known RBP	12	□□□□□ -0.49
CHD2-223	ENST00000636306	AEN	Q8WTP8	325 aa	Known RBP	12	□□□□□ -0.49
CHD2-223	ENST00000636306	ZNF473	Q8WTR7	871 aa	Known RBP	12	□□□□□ -0.49
CHD2-223	ENST00000636306	STRBP	Q96SI9	672 aa	Known RBP	12	□□□□□ -0.49
CHD2-223	ENST00000636306	EHD4	Q9H223	541 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	LZTFL1	Q9NQ48	299 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	POLR3E	Q9NVU0	708 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	LRP2BP	Q9P2M1	347 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	HOOK1	Q9UJC3	728 aa	Known RBP	12	□□□□□ -0.49
CHD2-223	ENST00000636306	WWC3	Q9ULE0	1092 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	ANGEL1	Q9UNK9	670 aa	Known RBP	12	□□□□□ -0.49
CHD2-223	ENST00000636306	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	12	□□□□□ -0.49
CHD2-223	ENST00000636306	BIN1	O00499	593 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	PPFIA3	O75145	1194 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	MBD4	O95243	580 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	XRCC4	Q13426	336 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	STK38	Q15208	465 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	SF3A1	Q15459	793 aa	Known RBP	12	□□□□□ -0.49
CHD2-223	ENST00000636306	LACTB2	Q53H82	288 aa	Predicted RBP	12	□□□□□ -0.49
CHD2-223	ENST00000636306	CAPRIN2	Q6IMN6	1127 aa	Known RBP	12	□□□□□ -0.49
CHD2-223	ENST00000636306	CCDC70	Q6NSX1	233 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	CRELD2	Q6UXH1	353 aa	Predicted RBP	12	□□□□□ -0.49
CHD2-223	ENST00000636306	TPTE2	Q6XPS3	522 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	TRAPPC11	Q7Z392	1133 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	VPS37D	Q86XT2	251 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	TRIM58	Q8NG06	486 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	RIN2	Q8WYP3	895 aa	Predicted RBP	12	□□□□□ -0.49
CHD2-223	ENST00000636306	IRX2	Q9BZI1	471 aa	Predicted RBP	12	□□□□□ -0.49
CHD2-223	ENST00000636306	EBF2	Q9HAK2	575 aa		12	□□□□□ -0.49
CHD2-223	ENST00000636306	CCDC88A	Q3V6T2	1871 aa		11.99	□□□□□ -0.49
CHD2-223	ENST00000636306	MGRN1	O60291	552 aa		11.99	□□□□□ -0.49
CHD2-223	ENST00000636306	CAND2	O75155	1236 aa		11.99	□□□□□ -0.49
CHD2-223	ENST00000636306	ECM2	O94769	699 aa	Predicted RBP	11.99	□□□□□ -0.49
CHD2-223	ENST00000636306	PDHB	P11177	359 aa		11.99	□□□□□ -0.49
CHD2-223	ENST00000636306	ADK	P55263	362 aa	Known RBP	11.99	□□□□□ -0.49
CHD2-223	ENST00000636306	PDIA5	Q14554	519 aa		11.99	□□□□□ -0.49
CHD2-223	ENST00000636306	IQCE	Q6IPM2	695 aa		11.99	□□□□□ -0.49
CHD2-223	ENST00000636306	RAD9B	Q6WBX8	426 aa		11.99	□□□□□ -0.49
CHD2-223	ENST00000636306	DACH1	Q9UI36	760 aa		11.99	□□□□□ -0.49
CHD2-223	ENST00000636306	LAMB1	P07942	1786 aa		11.99	□□□□□ -0.49
CHD2-223	ENST00000636306	FAM237A	A0A1B0GTK4	181 aa		11.98	□□□□□ -0.49
CHD2-223	ENST00000636306	PPFIA2	O75334	1257 aa		11.98	□□□□□ -0.49
CHD2-223	ENST00000636306	DNAJC8	O75937	253 aa	Predicted RBP	11.98	□□□□□ -0.49
CHD2-223	ENST00000636306	RTN3	O95197	1032 aa	Predicted RBP	11.98	□□□□□ -0.49
CHD2-223	ENST00000636306	GHR	P10912	638 aa		11.98	□□□□□ -0.49
CHD2-223	ENST00000636306	MAGEA8	P43361	318 aa		11.98	□□□□□ -0.49
CHD2-223	ENST00000636306	CCT2	P78371	535 aa	Known RBP	11.98	□□□□□ -0.49
CHD2-223	ENST00000636306	COL9A3	Q14050	684 aa	Predicted RBP	11.98	□□□□□ -0.49
CHD2-223	ENST00000636306	TBC1D25	Q3MII6	688 aa		11.98	□□□□□ -0.49
CHD2-223	ENST00000636306	CCDC38	Q502W7	563 aa		11.98	□□□□□ -0.49
CHD2-223	ENST00000636306	TBC1D9B	Q66K14	1250 aa		11.98	□□□□□ -0.49
CHD2-223	ENST00000636306	MIS18BP1	Q6P0N0	1132 aa		11.98	□□□□□ -0.49
CHD2-223	ENST00000636306	SYNE3	Q6ZMZ3	975 aa		11.98	□□□□□ -0.49
CHD2-223	ENST00000636306	ANKRD23	Q86SG2	305 aa		11.98	□□□□□ -0.49
CHD2-223	ENST00000636306	PARD3B	Q8TEW8	1205 aa		11.98	□□□□□ -0.49
CHD2-223	ENST00000636306	GJD4	Q96KN9	370 aa	Predicted RBP	11.98	□□□□□ -0.49
CHD2-223	ENST00000636306	SPAG5	Q96R06	1193 aa		11.98	□□□□□ -0.49
CHD2-223	ENST00000636306	CHCHD3	Q9NX63	227 aa	Known RBP	11.98	□□□□□ -0.49
CHD2-223	ENST00000636306	TRPC5	Q9UL62	973 aa	Predicted RBP	11.98	□□□□□ -0.49
CHD2-223	ENST00000636306	TRPC6	Q9Y210	931 aa		11.98	□□□□□ -0.49
CHD2-223	ENST00000636306	SH2B2	O14492	632 aa	Predicted RBP	11.97	□□□□□ -0.49
CHD2-223	ENST00000636306	SPTLC2	O15270	562 aa		11.97	□□□□□ -0.49
CHD2-223	ENST00000636306	SMNDC1	O75940	238 aa	Known RBP eCLIP	11.97	□□□□□ -0.49	3e-7	■■□□□ 14.3
CHD2-223	ENST00000636306	PC	P11498	1178 aa	Known RBP	11.97	□□□□□ -0.49
CHD2-223	ENST00000636306	ZNF18	P17022	549 aa		11.97	□□□□□ -0.49
CHD2-223	ENST00000636306	LSP1	P33241	339 aa		11.97	□□□□□ -0.49
CHD2-223	ENST00000636306	NT5C2	P49902	561 aa		11.97	□□□□□ -0.49
CHD2-223	ENST00000636306	RCAN1	P53805	252 aa		11.97	□□□□□ -0.49
CHD2-223	ENST00000636306	NNT	Q13423	1086 aa		11.97	□□□□□ -0.49
CHD2-223	ENST00000636306	RIPK1	Q13546	671 aa		11.97	□□□□□ -0.49
CHD2-223	ENST00000636306	NR1I3	Q14994	352 aa		11.97	□□□□□ -0.49
CHD2-223	ENST00000636306	PTGIS	Q16647	500 aa		11.97	□□□□□ -0.49
CHD2-223	ENST00000636306	CWF19L1	Q69YN2	538 aa	Known RBP	11.97	□□□□□ -0.49
CHD2-223	ENST00000636306	PPFIBP1	Q86W92	1011 aa		11.97	□□□□□ -0.49
CHD2-223	ENST00000636306	TMTC1	Q8IUR5	882 aa		11.97	□□□□□ -0.49
CHD2-223	ENST00000636306	CCDC170	Q8IYT3	715 aa		11.97	□□□□□ -0.49
CHD2-223	ENST00000636306	IFNL3	Q8IZI9	196 aa		11.97	□□□□□ -0.49
CHD2-223	ENST00000636306	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.97	□□□□□ -0.49
CHD2-223	ENST00000636306	ENOX1	Q8TC92	643 aa	Known RBP	11.97	□□□□□ -0.49
CHD2-223	ENST00000636306	ZBTB10	Q96DT7	871 aa		11.97	□□□□□ -0.49
CHD2-223	ENST00000636306	THOC1	Q96FV9	657 aa	Known RBP	11.97	□□□□□ -0.49

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